Wall clock time and date at job start Tue Mar 31 2020 21:01:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52994 * 109.47198 * 2 1
4 4 C 1.52997 * 109.46810 * 239.99589 * 2 1 3
5 5 C 1.52996 * 109.46567 * 119.99811 * 2 1 3
6 6 H 1.09000 * 109.46898 * 179.97438 * 5 2 1
7 7 C 1.53004 * 109.47522 * 59.99965 * 5 2 1
8 8 N 1.46895 * 109.47035 * 184.99817 * 7 5 2
9 9 C 1.46906 * 110.99789 * 179.97438 * 8 7 5
10 10 C 1.50703 * 109.47109 * 179.97438 * 9 8 7
11 11 O 1.21296 * 119.99996 * 0.02562 * 10 9 8
12 12 N 1.34776 * 119.99978 * 180.02562 * 10 9 8
13 13 C 1.37099 * 119.99848 * 180.02562 * 12 10 9
14 14 H 1.07998 * 120.00405 * 359.97438 * 13 12 10
15 15 C 1.38953 * 119.99358 * 179.97438 * 13 12 10
16 16 N 1.31411 * 120.00464 * 359.97438 * 15 13 12
17 17 Si 1.86803 * 119.99431 * 179.97438 * 15 13 12
18 18 H 1.48501 * 109.47151 * 90.00176 * 17 15 13
19 19 H 1.48498 * 109.47184 * 210.00131 * 17 15 13
20 20 H 1.48501 * 109.47470 * 330.00337 * 17 15 13
21 21 N 1.46503 * 109.47499 * 299.99593 * 5 2 1
22 22 C 1.34771 * 120.00107 * 275.00916 * 21 5 2
23 23 O 1.21498 * 120.00268 * 359.97438 * 22 21 5
24 24 C 1.48329 * 119.99945 * 179.97438 * 22 21 5
25 25 C 1.42280 * 126.93602 * 179.70413 * 24 22 21
26 26 C 1.35323 * 103.91813 * 179.91000 * 25 24 22
27 27 O 1.34015 * 106.66936 * 0.35265 * 26 25 24
28 28 N 1.20908 * 111.84724 * 359.75717 * 27 26 25
29 29 H 1.08998 * 109.47123 * 300.00856 * 1 2 3
30 30 H 1.09008 * 109.46729 * 60.00211 * 1 2 3
31 31 H 1.08997 * 109.47706 * 179.97438 * 1 2 3
32 32 H 1.09003 * 109.47250 * 179.97438 * 3 2 1
33 33 H 1.09008 * 109.47108 * 299.99557 * 3 2 1
34 34 H 1.08998 * 109.47783 * 59.99548 * 3 2 1
35 35 H 1.08997 * 109.47208 * 299.99986 * 4 2 1
36 36 H 1.08992 * 109.47545 * 60.00404 * 4 2 1
37 37 H 1.09000 * 109.46922 * 180.02562 * 4 2 1
38 38 H 1.08996 * 109.46863 * 64.99659 * 7 5 2
39 39 H 1.09002 * 109.46661 * 304.99836 * 7 5 2
40 40 H 1.00902 * 111.00273 * 303.95364 * 8 7 5
41 41 H 1.08992 * 109.47459 * 299.99826 * 9 8 7
42 42 H 1.09004 * 109.47040 * 59.99976 * 9 8 7
43 43 H 0.97002 * 119.99767 * 359.97438 * 12 10 9
44 44 H 0.96997 * 119.99770 * 179.97438 * 16 15 13
45 45 H 0.97002 * 119.99507 * 94.99584 * 21 5 2
46 46 H 1.07991 * 128.03867 * 0.03758 * 25 24 22
47 47 H 1.07993 * 126.66370 * 180.09152 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0399 -0.7213 -1.2492
5 6 2.0399 -0.7212 1.2493
6 1 3.1299 -0.7216 1.2491
7 6 1.5298 -2.1637 1.2494
8 7 1.9184 -2.8204 2.5046
9 6 1.4439 -4.2102 2.5405
10 6 1.8610 -4.8500 3.8397
11 8 2.4910 -4.2109 4.6557
12 7 1.5338 -6.1324 4.0948
13 6 1.9128 -6.7142 5.2770
14 1 2.4737 -6.1452 6.0036
15 6 1.5750 -8.0361 5.5402
16 7 0.8920 -8.7284 4.6563
17 14 2.0919 -8.8292 7.1506
18 1 1.0331 -8.6159 8.1697
19 1 2.2929 -10.2858 6.9430
20 1 3.3607 -8.2163 7.6194
21 7 1.5516 -0.0305 2.4455
22 6 2.2283 1.0263 2.9368
23 8 3.2437 1.4060 2.3881
24 6 1.7336 1.7259 4.1476
25 6 2.3300 2.8456 4.7917
26 6 1.5034 3.1010 5.8322
27 8 0.5240 2.1878 5.7782
28 7 0.6627 1.4341 4.8430
29 1 -0.3633 0.5140 0.8899
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3634 -1.0276 -0.0005
32 1 3.1301 1.4424 0.0005
33 1 1.6767 1.9563 -0.8901
34 1 1.6767 1.9564 0.8899
35 1 1.6766 -1.7490 -1.2491
36 1 1.6767 -0.2076 -2.1392
37 1 3.1299 -0.7217 -1.2490
38 1 1.9645 -2.7028 0.4076
39 1 0.4435 -2.1649 1.1598
40 1 2.9169 -2.7752 2.6424
41 1 0.3571 -4.2254 2.4601
42 1 1.8776 -4.7638 1.7076
43 1 1.0297 -6.6433 3.4424
44 1 0.6566 -9.6512 4.8400
45 1 0.7411 -0.3338 2.8836
46 1 3.2316 3.3709 4.5136
47 1 1.6139 3.8854 6.5662
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001507898165.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:01:51
Heat of formation + Delta-G solvation = -37.926573 kcal
Electronic energy + Delta-G solvation = -29762.547964 eV
Core-core repulsion = 25561.712221 eV
Total energy + Delta-G solvation = -4200.835743 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-46.08259 -41.41085 -40.14061 -38.81142 -36.43669 -35.74229 -35.10948 -34.46133
-33.27896 -32.72051 -30.44528 -28.23424 -28.10862 -27.75731 -26.11404 -25.15069
-23.94817 -23.18918 -21.61680 -21.15280 -20.00590 -19.85939 -19.26132 -18.76583
-17.99398 -17.90124 -17.33279 -16.88584 -16.61459 -16.41135 -15.93172 -15.63842
-15.34798 -15.28019 -14.95742 -14.79058 -14.60811 -14.39725 -14.23354 -14.10053
-13.66315 -13.44796 -13.14287 -13.05965 -12.88227 -12.76543 -12.69367 -12.60554
-12.43914 -12.26464 -12.15484 -12.10756 -11.73191 -11.52425 -11.46564 -11.41387
-11.28097 -10.70612 -10.38100 -10.02850 -10.00992 -9.36054 -8.48307 -5.96955
0.14710 0.81231 1.36529 1.40307 1.52924 1.89822 2.04291 2.12741
2.27615 2.36603 2.83006 2.98338 3.19064 3.46102 3.63743 3.72281
3.86631 3.95899 4.08204 4.19907 4.23535 4.29431 4.33330 4.46961
4.51524 4.56653 4.63989 4.67221 4.73552 4.80115 4.86878 4.94031
4.99702 5.03366 5.04852 5.17392 5.26044 5.35892 5.39206 5.46419
5.52510 5.83985 6.06441 6.28216 6.36127 6.58916 6.98361 7.11420
7.13586 7.54967 8.10913 8.69081
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.010630 B = 0.002824 C = 0.002345
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2633.519763 B = 9911.555576 C =11937.971651
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.072 4.072
3 C -0.125 4.125
4 C -0.140 4.140
5 C 0.161 3.839
6 H 0.070 0.930
7 C 0.050 3.950
8 N -0.681 5.681
9 C 0.067 3.933
10 C 0.436 3.564
11 O -0.625 6.625
12 N -0.572 5.572
13 C -0.335 4.335
14 H 0.076 0.924
15 C -0.011 4.011
16 N -0.919 5.919
17 Si 0.991 3.009
18 H -0.271 1.271
19 H -0.269 1.269
20 H -0.274 1.274
21 N -0.683 5.683
22 C 0.595 3.405
23 O -0.552 6.552
24 C -0.057 4.057
25 C -0.206 4.206
26 C -0.030 4.030
27 O 0.122 5.878
28 N -0.354 5.354
29 H 0.044 0.956
30 H 0.067 0.933
31 H 0.069 0.931
32 H 0.046 0.954
33 H 0.061 0.939
34 H 0.034 0.966
35 H 0.070 0.930
36 H 0.070 0.930
37 H 0.052 0.948
38 H 0.069 0.931
39 H 0.097 0.903
40 H 0.340 0.660
41 H 0.108 0.892
42 H 0.070 0.930
43 H 0.397 0.603
44 H 0.278 0.722
45 H 0.410 0.590
46 H 0.192 0.808
47 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.773 22.220 -9.151 24.190
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.073 4.073
3 C -0.182 4.182
4 C -0.198 4.198
5 C 0.056 3.944
6 H 0.088 0.912
7 C -0.079 4.079
8 N -0.312 5.312
9 C -0.065 4.065
10 C 0.224 3.776
11 O -0.512 6.512
12 N -0.209 5.209
13 C -0.465 4.465
14 H 0.094 0.906
15 C -0.211 4.211
16 N -0.560 5.560
17 Si 0.815 3.185
18 H -0.196 1.196
19 H -0.194 1.194
20 H -0.199 1.199
21 N -0.332 5.332
22 C 0.380 3.620
23 O -0.430 6.430
24 C -0.215 4.215
25 C -0.229 4.229
26 C -0.111 4.111
27 O 0.045 5.955
28 N -0.054 5.054
29 H 0.063 0.937
30 H 0.086 0.914
31 H 0.088 0.912
32 H 0.065 0.935
33 H 0.080 0.920
34 H 0.053 0.947
35 H 0.088 0.912
36 H 0.089 0.911
37 H 0.071 0.929
38 H 0.087 0.913
39 H 0.115 0.885
40 H 0.158 0.842
41 H 0.126 0.874
42 H 0.088 0.912
43 H 0.231 0.769
44 H 0.088 0.912
45 H 0.246 0.754
46 H 0.209 0.791
47 H 0.293 0.707
Dipole moment (debyes) X Y Z Total
from point charges -3.169 21.930 -8.861 23.863
hybrid contribution 1.102 -0.855 0.157 1.403
sum -2.067 21.075 -8.703 22.895
Atomic orbital electron populations
1.21909 0.93343 1.02633 1.01882 1.20895 0.96782 0.95538 0.94120
1.21810 1.00582 0.95214 1.00635 1.21898 1.01050 1.00793 0.96016
1.21139 0.98793 0.90566 0.83898 0.91156 1.22508 1.02623 0.92240
0.90535 1.60034 1.20436 1.14931 1.35847 1.21534 1.02358 0.89169
0.93461 1.20939 0.83924 0.82260 0.90507 1.90506 1.45868 1.63767
1.51064 1.41913 1.50034 1.10737 1.18254 1.19641 1.34455 0.95870
0.96491 0.90602 1.26013 0.96422 0.96284 1.02396 1.69663 1.38863
1.11018 1.36462 0.84955 0.78593 0.77485 0.77473 1.19619 1.19366
1.19916 1.45666 1.28698 1.29697 1.29111 1.17011 0.83190 0.80274
0.81569 1.90757 1.25221 1.66758 1.60224 1.23807 0.96148 1.00910
1.00673 1.23065 1.04520 0.98146 0.97168 1.26983 0.87051 0.95904
1.01120 1.84771 1.42892 1.31780 1.36074 1.74231 1.18872 1.13307
0.98981 0.93718 0.91439 0.91194 0.93469 0.92013 0.94702 0.91157
0.91089 0.92856 0.91339 0.88502 0.84242 0.87395 0.91228 0.76902
0.91249 0.75437 0.79104 0.70707
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.25 7.97 71.98 0.57 -1.68 16
2 C -0.07 -1.31 0.62 -52.18 -0.03 -1.34 16
3 C -0.13 -2.66 7.00 71.98 0.50 -2.16 16
4 C -0.14 -2.07 8.12 71.98 0.58 -1.48 16
5 C 0.16 3.67 1.77 44.99 0.08 3.75 16
6 H 0.07 1.90 7.58 -2.39 -0.02 1.88 16
7 C 0.05 1.08 4.52 86.31 0.39 1.47 16
8 N -0.68 -21.05 5.85 -517.92 -3.03 -24.08 16
9 C 0.07 2.23 6.17 85.56 0.53 2.75 16
10 C 0.44 20.89 7.82 87.66 0.69 21.57 16
11 O -0.63 -35.46 15.78 -3.08 -0.05 -35.51 16
12 N -0.57 -29.50 5.29 -306.98 -1.62 -31.13 16
13 C -0.33 -19.27 9.68 84.04 0.81 -18.46 16
14 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16
15 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16
16 N -0.92 -49.70 13.05 21.66 0.28 -49.42 16
17 Si 0.99 43.35 29.55 68.60 2.03 45.38 16
18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16
19 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16
20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16
21 N -0.68 -17.80 3.92 -444.94 -1.74 -19.55 16
22 C 0.59 17.34 6.20 86.93 0.54 17.87 16
23 O -0.55 -17.98 14.07 -3.71 -0.05 -18.03 16
24 C -0.06 -1.52 7.19 42.96 0.31 -1.21 16
25 C -0.21 -3.88 10.99 22.60 0.25 -3.63 16
26 C -0.03 -0.38 12.28 67.15 0.82 0.45 16
27 O 0.12 2.44 11.18 71.88 0.80 3.25 16
28 N -0.35 -9.34 11.84 -49.50 -0.59 -9.92 16
29 H 0.04 0.82 7.60 -2.39 -0.02 0.80 16
30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16
31 H 0.07 0.99 6.32 -2.39 -0.02 0.98 16
32 H 0.05 1.15 7.53 -2.39 -0.02 1.14 16
33 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16
34 H 0.03 0.86 5.78 -2.39 -0.01 0.84 16
35 H 0.07 0.91 6.54 -2.39 -0.02 0.89 16
36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16
37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16
38 H 0.07 1.25 6.71 -2.39 -0.02 1.24 16
39 H 0.10 1.85 6.17 -2.39 -0.01 1.83 16
40 H 0.34 11.77 8.43 -89.69 -0.76 11.02 16
41 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16
42 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16
43 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16
44 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16
45 H 0.41 10.94 8.36 -92.71 -0.78 10.16 16
46 H 0.19 2.95 8.06 -2.92 -0.02 2.93 16
47 H 0.28 -0.04 8.06 -2.91 -0.02 -0.06 16
Total: -1.00 -76.17 387.04 1.32 -74.85
By element:
Atomic # 1 Polarization: 47.61 SS G_CDS: -1.23 Total: 46.39 kcal
Atomic # 6 Polarization: 11.25 SS G_CDS: 6.51 Total: 17.77 kcal
Atomic # 7 Polarization: -127.39 SS G_CDS: -6.70 Total: -134.09 kcal
Atomic # 8 Polarization: -51.00 SS G_CDS: 0.70 Total: -50.29 kcal
Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal
Total: -76.17 1.32 -74.85 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001507898165.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.928 kcal
(2) G-P(sol) polarization free energy of solvation -76.171 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.243 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.855 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.927 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds