Wall clock time and date at job start Tue Mar 31 2020 21:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47065 * 2 1 4 4 C 1.52997 * 109.47096 * 240.00045 * 2 1 3 5 5 C 1.52999 * 109.47156 * 119.99849 * 2 1 3 6 6 H 1.08995 * 109.47098 * 179.97438 * 5 2 1 7 7 C 1.53004 * 109.47083 * 299.99894 * 5 2 1 8 8 N 1.46903 * 109.46973 * 174.99783 * 7 5 2 9 9 C 1.46896 * 111.00028 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.47190 * 180.02562 * 9 8 7 11 11 O 1.21291 * 119.99912 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99930 * 179.97438 * 10 9 8 13 13 C 1.37099 * 119.99971 * 179.97438 * 12 10 9 14 14 H 1.07997 * 119.99994 * 0.02562 * 13 12 10 15 15 C 1.38956 * 120.00034 * 180.02562 * 13 12 10 16 16 N 1.31413 * 119.99972 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00014 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46988 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47139 * 120.00036 * 17 15 13 20 20 H 1.48500 * 109.47297 * 240.00277 * 17 15 13 21 21 N 1.46498 * 109.47257 * 59.99882 * 5 2 1 22 22 C 1.34777 * 119.99828 * 84.72116 * 21 5 2 23 23 O 1.21683 * 120.00007 * 0.28045 * 22 21 5 24 24 C 1.46718 * 120.00072 * 180.27891 * 22 21 5 25 25 C 1.36342 * 126.64474 * 180.02562 * 24 22 21 26 26 N 1.33696 * 107.45524 * 179.97438 * 25 24 22 27 27 C 1.30623 * 108.99181 * 0.02562 * 26 25 24 28 28 O 1.33663 * 109.15398 * 359.72694 * 27 26 25 29 29 H 1.09003 * 109.46926 * 300.00435 * 1 2 3 30 30 H 1.08998 * 109.47115 * 59.99556 * 1 2 3 31 31 H 1.08994 * 109.47213 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47062 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47077 * 299.99927 * 3 2 1 34 34 H 1.08996 * 109.47248 * 60.00097 * 3 2 1 35 35 H 1.09003 * 109.47146 * 299.99852 * 4 2 1 36 36 H 1.08996 * 109.47253 * 59.99946 * 4 2 1 37 37 H 1.08995 * 109.47275 * 180.02562 * 4 2 1 38 38 H 1.08997 * 109.47038 * 294.99798 * 7 5 2 39 39 H 1.08999 * 109.47047 * 55.00424 * 7 5 2 40 40 H 1.00896 * 111.00075 * 303.96062 * 8 7 5 41 41 H 1.09001 * 109.46867 * 300.00094 * 9 8 7 42 42 H 1.08992 * 109.47029 * 60.00008 * 9 8 7 43 43 H 0.97002 * 120.00702 * 359.97438 * 12 10 9 44 44 H 0.96998 * 119.99654 * 179.97438 * 16 15 13 45 45 H 0.97001 * 120.00384 * 265.00562 * 21 5 2 46 46 H 1.07998 * 126.27760 * 0.03894 * 25 24 22 47 47 H 1.08003 * 125.41719 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 3.1299 -0.7216 1.2490 7 6 1.5300 0.0001 2.4985 8 7 1.9186 -0.7586 3.6949 9 6 1.4443 -0.0947 4.9164 10 6 1.8613 -0.8998 6.1201 11 8 2.4921 -1.9255 5.9747 12 7 1.5343 -0.4795 7.3581 13 6 1.9132 -1.2123 8.4532 14 1 2.4741 -2.1260 8.3237 15 6 1.5756 -0.7792 9.7296 16 7 0.8926 0.3324 9.8871 17 14 2.0912 -1.7780 11.2216 18 1 2.8444 -2.9783 10.7775 19 1 2.9560 -0.9478 12.0982 20 1 0.8838 -2.2015 11.9752 21 7 1.5517 -2.1024 1.2493 22 6 2.2254 -3.0554 0.5752 23 8 3.2421 -2.7695 -0.0292 24 6 1.7330 -4.4375 0.5702 25 6 2.3036 -5.5023 -0.0618 26 7 1.5413 -6.5720 0.1871 27 6 0.5353 -6.2116 0.9383 28 8 0.6275 -4.9034 1.1967 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1299 -0.7216 -1.2490 38 1 1.9647 0.9986 2.5444 39 1 0.4437 0.0783 2.4549 40 1 1.5819 -1.7084 3.6459 41 1 1.8780 0.9034 4.9793 42 1 0.3574 -0.0175 4.8893 43 1 1.0308 0.3414 7.4745 44 1 0.6566 0.6344 10.7782 45 1 0.7412 -2.3303 1.7311 46 1 3.2066 -5.4852 -0.6540 47 1 -0.2445 -6.8672 1.2971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507992079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:04 Heat of formation + Delta-G solvation = -48.180290 kcal Electronic energy + Delta-G solvation = -29811.591691 eV Core-core repulsion = 25610.311313 eV Total energy + Delta-G solvation = -4201.280378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.67805 -40.53666 -38.39096 -37.79845 -35.28273 -35.15848 -33.94536 -33.58540 -31.26506 -30.82304 -29.21059 -27.55043 -27.24712 -26.20780 -24.48988 -23.82155 -22.97522 -22.11692 -21.05789 -19.38913 -19.20081 -18.53092 -17.90086 -17.17330 -17.10902 -16.47962 -16.19059 -15.86013 -15.45334 -14.66568 -14.65996 -14.54270 -14.39999 -14.22025 -13.93501 -13.85222 -13.72675 -13.48783 -13.12703 -12.59123 -12.52256 -12.33077 -11.93660 -11.83713 -11.79023 -11.69475 -11.55673 -11.44813 -11.33466 -11.14763 -11.07865 -10.95023 -10.65179 -10.39430 -10.36406 -10.25164 -9.54884 -9.45168 -9.16644 -8.50400 -8.12490 -7.99144 -6.44758 -3.85524 0.57976 2.17064 2.19545 2.89467 2.94449 3.14271 3.25179 3.32504 3.85893 3.87088 3.96966 4.21577 4.46553 4.61007 4.66423 4.69119 4.73329 4.94988 5.03472 5.17213 5.21769 5.23660 5.27659 5.30889 5.42445 5.49606 5.53292 5.63247 5.68597 5.73788 5.77370 5.82486 5.88573 5.89726 5.89912 6.01268 6.07814 6.21584 6.24578 6.30378 7.05666 7.09472 7.30580 7.52773 7.53605 7.83263 8.03460 8.58006 9.15159 9.51013 10.02347 10.73011 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010742 B = 0.002823 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.975622 B = 9916.091307 C =11917.877928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.142 4.142 4 C -0.132 4.132 5 C 0.159 3.841 6 H 0.103 0.897 7 C 0.046 3.954 8 N -0.667 5.667 9 C 0.050 3.950 10 C 0.440 3.560 11 O -0.582 6.582 12 N -0.563 5.563 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.282 1.282 21 N -0.706 5.706 22 C 0.613 3.387 23 O -0.509 6.509 24 C -0.106 4.106 25 C 0.050 3.950 26 N -0.496 5.496 27 C 0.201 3.799 28 O -0.190 6.190 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.038 0.962 40 H 0.347 0.653 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.402 0.598 46 H 0.196 0.804 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 -1.642 -21.463 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 C -0.200 4.200 4 C -0.190 4.190 5 C 0.055 3.945 6 H 0.121 0.879 7 C -0.084 4.084 8 N -0.300 5.300 9 C -0.082 4.082 10 C 0.225 3.775 11 O -0.466 6.466 12 N -0.200 5.200 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.208 1.208 21 N -0.356 5.356 22 C 0.398 3.602 23 O -0.385 6.385 24 C -0.162 4.162 25 C -0.093 4.093 26 N -0.224 5.224 27 C -0.024 4.024 28 O -0.076 6.076 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.167 0.833 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.237 0.763 46 H 0.213 0.787 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -3.586 -2.322 -21.920 22.333 hybrid contribution -1.708 0.318 1.454 2.266 sum -5.295 -2.004 -20.466 21.235 Atomic orbital electron populations 1.21946 0.94568 1.01720 1.01970 1.20959 0.95895 0.95934 0.95261 1.21898 1.01553 0.94474 1.02047 1.21904 1.01936 0.99545 0.95589 1.21209 1.00936 0.78990 0.93411 0.87912 1.22431 0.98258 0.98581 0.89099 1.60022 1.64376 1.05761 0.99800 1.21687 0.97690 0.98769 0.90077 1.19792 0.85659 0.87971 0.84090 1.90535 1.43941 1.26454 1.85697 1.41863 1.49468 1.24229 1.04424 1.19756 1.32779 1.06725 0.83598 0.87882 1.25264 0.96899 0.96650 0.99116 1.69618 1.38891 1.21792 1.23994 0.85804 0.78287 0.79613 0.80681 1.19203 1.20703 1.20755 1.45844 1.28892 1.08841 1.51994 1.16199 0.83386 0.81070 0.79525 1.90906 1.23628 1.80052 1.43960 1.23293 0.90963 0.97324 1.04624 1.23601 1.00330 0.86089 0.99261 1.70462 1.04989 1.30744 1.16185 1.28437 0.98841 0.80272 0.94874 1.84514 1.39507 1.25992 1.57546 0.92167 0.92570 0.92854 0.92103 0.92398 0.92102 0.93061 0.93413 0.91573 0.89022 0.94448 0.83349 0.89420 0.93856 0.77472 0.91908 0.76316 0.78660 0.72825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 7.97 37.16 0.30 -0.84 16 2 C -0.08 -0.70 0.62 -154.51 -0.10 -0.79 16 3 C -0.14 -1.12 8.12 37.16 0.30 -0.82 16 4 C -0.13 -1.31 6.99 37.16 0.26 -1.05 16 5 C 0.16 1.69 1.84 -67.93 -0.12 1.56 16 6 H 0.10 1.34 7.58 -51.93 -0.39 0.94 16 7 C 0.05 0.50 4.58 -3.82 -0.02 0.49 16 8 N -0.67 -10.20 6.12 -115.06 -0.70 -10.90 16 9 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 10 C 0.44 10.22 7.82 -10.99 -0.09 10.13 16 11 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 12 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 13 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 14 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 15 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 16 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 17 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 N -0.71 -7.54 3.48 -55.10 -0.19 -7.74 16 22 C 0.61 7.53 6.13 -12.84 -0.08 7.45 16 23 O -0.51 -7.29 13.99 5.20 0.07 -7.22 16 24 C -0.11 -1.22 7.18 -36.84 -0.26 -1.48 16 25 C 0.05 0.55 11.66 -17.42 -0.20 0.35 16 26 N -0.50 -5.35 11.26 -14.67 -0.17 -5.51 16 27 C 0.20 1.64 13.21 52.25 0.69 2.33 16 28 O -0.19 -1.90 10.57 4.42 0.05 -1.85 16 29 H 0.06 0.45 6.32 -51.93 -0.33 0.12 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.43 7.60 -51.93 -0.39 0.03 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 35 H 0.05 0.56 5.76 -51.93 -0.30 0.26 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.74 7.52 -51.93 -0.39 0.35 16 38 H 0.09 0.95 6.71 -51.93 -0.35 0.60 16 39 H 0.04 0.36 6.17 -51.93 -0.32 0.04 16 40 H 0.35 5.54 7.28 -39.29 -0.29 5.25 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 44 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.40 3.87 7.95 -40.82 -0.32 3.54 16 46 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 47 H 0.26 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -33.92 385.64 -5.63 -39.56 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -6.64 Total: 15.10 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 0.41 Total: 10.21 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -0.39 Total: -61.86 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: 0.21 Total: -24.74 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.92 -5.63 -39.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507992079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.622 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds