Wall clock time and date at job start Tue Mar 31 2020 21:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47065 * 2 1 4 4 C 1.52997 * 109.47096 * 240.00045 * 2 1 3 5 5 C 1.52999 * 109.47156 * 119.99849 * 2 1 3 6 6 H 1.08995 * 109.47098 * 179.97438 * 5 2 1 7 7 C 1.53004 * 109.47083 * 299.99894 * 5 2 1 8 8 N 1.46903 * 109.46973 * 174.99783 * 7 5 2 9 9 C 1.46896 * 111.00028 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.47190 * 180.02562 * 9 8 7 11 11 O 1.21291 * 119.99912 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99930 * 179.97438 * 10 9 8 13 13 C 1.37099 * 119.99971 * 179.97438 * 12 10 9 14 14 H 1.07997 * 119.99994 * 0.02562 * 13 12 10 15 15 C 1.38956 * 120.00034 * 180.02562 * 13 12 10 16 16 N 1.31413 * 119.99972 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00014 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46988 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47139 * 120.00036 * 17 15 13 20 20 H 1.48500 * 109.47297 * 240.00277 * 17 15 13 21 21 N 1.46498 * 109.47257 * 59.99882 * 5 2 1 22 22 C 1.34777 * 119.99828 * 84.72116 * 21 5 2 23 23 O 1.21683 * 120.00007 * 0.28045 * 22 21 5 24 24 C 1.46718 * 120.00072 * 180.27891 * 22 21 5 25 25 C 1.36342 * 126.64474 * 180.02562 * 24 22 21 26 26 N 1.33696 * 107.45524 * 179.97438 * 25 24 22 27 27 C 1.30623 * 108.99181 * 0.02562 * 26 25 24 28 28 O 1.33663 * 109.15398 * 359.72694 * 27 26 25 29 29 H 1.09003 * 109.46926 * 300.00435 * 1 2 3 30 30 H 1.08998 * 109.47115 * 59.99556 * 1 2 3 31 31 H 1.08994 * 109.47213 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47062 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47077 * 299.99927 * 3 2 1 34 34 H 1.08996 * 109.47248 * 60.00097 * 3 2 1 35 35 H 1.09003 * 109.47146 * 299.99852 * 4 2 1 36 36 H 1.08996 * 109.47253 * 59.99946 * 4 2 1 37 37 H 1.08995 * 109.47275 * 180.02562 * 4 2 1 38 38 H 1.08997 * 109.47038 * 294.99798 * 7 5 2 39 39 H 1.08999 * 109.47047 * 55.00424 * 7 5 2 40 40 H 1.00896 * 111.00075 * 303.96062 * 8 7 5 41 41 H 1.09001 * 109.46867 * 300.00094 * 9 8 7 42 42 H 1.08992 * 109.47029 * 60.00008 * 9 8 7 43 43 H 0.97002 * 120.00702 * 359.97438 * 12 10 9 44 44 H 0.96998 * 119.99654 * 179.97438 * 16 15 13 45 45 H 0.97001 * 120.00384 * 265.00562 * 21 5 2 46 46 H 1.07998 * 126.27760 * 0.03894 * 25 24 22 47 47 H 1.08003 * 125.41719 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 3.1299 -0.7216 1.2490 7 6 1.5300 0.0001 2.4985 8 7 1.9186 -0.7586 3.6949 9 6 1.4443 -0.0947 4.9164 10 6 1.8613 -0.8998 6.1201 11 8 2.4921 -1.9255 5.9747 12 7 1.5343 -0.4795 7.3581 13 6 1.9132 -1.2123 8.4532 14 1 2.4741 -2.1260 8.3237 15 6 1.5756 -0.7792 9.7296 16 7 0.8926 0.3324 9.8871 17 14 2.0912 -1.7780 11.2216 18 1 2.8444 -2.9783 10.7775 19 1 2.9560 -0.9478 12.0982 20 1 0.8838 -2.2015 11.9752 21 7 1.5517 -2.1024 1.2493 22 6 2.2254 -3.0554 0.5752 23 8 3.2421 -2.7695 -0.0292 24 6 1.7330 -4.4375 0.5702 25 6 2.3036 -5.5023 -0.0618 26 7 1.5413 -6.5720 0.1871 27 6 0.5353 -6.2116 0.9383 28 8 0.6275 -4.9034 1.1967 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1299 -0.7216 -1.2490 38 1 1.9647 0.9986 2.5444 39 1 0.4437 0.0783 2.4549 40 1 1.5819 -1.7084 3.6459 41 1 1.8780 0.9034 4.9793 42 1 0.3574 -0.0175 4.8893 43 1 1.0308 0.3414 7.4745 44 1 0.6566 0.6344 10.7782 45 1 0.7412 -2.3303 1.7311 46 1 3.2066 -5.4852 -0.6540 47 1 -0.2445 -6.8672 1.2971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507992079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:03 Heat of formation + Delta-G solvation = -76.757325 kcal Electronic energy + Delta-G solvation = -29812.830884 eV Core-core repulsion = 25610.311313 eV Total energy + Delta-G solvation = -4202.519571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.45229 -41.43466 -40.12783 -38.80361 -36.43655 -36.05384 -35.73884 -34.60967 -33.26579 -31.66729 -30.30672 -28.18942 -28.08119 -27.62536 -25.88925 -24.93218 -23.76149 -23.05752 -21.94662 -21.13042 -20.01528 -19.95273 -19.33181 -18.05494 -17.91570 -17.77645 -17.20822 -16.93351 -16.79712 -16.39702 -15.90745 -15.59395 -15.38436 -15.27679 -15.16769 -14.94498 -14.62437 -14.51784 -14.27199 -14.02949 -13.53448 -13.39912 -13.16885 -13.06536 -12.88056 -12.72771 -12.59318 -12.58851 -12.41421 -12.29908 -12.15903 -12.11376 -11.97012 -11.68825 -11.52007 -11.42593 -11.31670 -10.38952 -10.29561 -10.01613 -9.98973 -9.31722 -8.47514 -5.95873 -0.23120 1.35873 1.39092 1.41641 1.42444 1.55353 1.99503 2.05185 2.11534 2.28532 2.85518 3.20113 3.25565 3.46196 3.65769 3.79811 3.85983 3.88873 3.99268 4.17565 4.28095 4.34950 4.43458 4.48067 4.53163 4.58455 4.60636 4.70599 4.77177 4.82993 4.91358 4.96611 5.06506 5.08184 5.17654 5.19972 5.26641 5.35758 5.40763 5.49361 5.54325 5.85405 6.07869 6.20925 6.33809 6.51526 6.59947 6.93656 7.12687 7.56284 8.12021 8.69995 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010742 B = 0.002823 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.975622 B = 9916.091307 C =11917.877928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.127 4.127 5 C 0.162 3.838 6 H 0.074 0.926 7 C 0.052 3.948 8 N -0.686 5.686 9 C 0.066 3.934 10 C 0.436 3.564 11 O -0.626 6.626 12 N -0.572 5.572 13 C -0.333 4.333 14 H 0.076 0.924 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 0.990 3.010 18 H -0.275 1.275 19 H -0.271 1.271 20 H -0.269 1.269 21 N -0.698 5.698 22 C 0.611 3.389 23 O -0.539 6.539 24 C -0.128 4.128 25 C 0.046 3.954 26 N -0.525 5.525 27 C 0.222 3.778 28 O -0.194 6.194 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.341 0.659 41 H 0.107 0.893 42 H 0.073 0.927 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.408 0.592 46 H 0.201 0.799 47 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.237 -0.952 -21.409 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 C -0.199 4.199 4 C -0.184 4.184 5 C 0.058 3.942 6 H 0.093 0.907 7 C -0.077 4.077 8 N -0.319 5.319 9 C -0.067 4.067 10 C 0.223 3.777 11 O -0.512 6.512 12 N -0.209 5.209 13 C -0.463 4.463 14 H 0.094 0.906 15 C -0.211 4.211 16 N -0.560 5.560 17 Si 0.814 3.186 18 H -0.200 1.200 19 H -0.197 1.197 20 H -0.194 1.194 21 N -0.348 5.348 22 C 0.397 3.603 23 O -0.418 6.418 24 C -0.183 4.183 25 C -0.096 4.096 26 N -0.253 5.253 27 C -0.002 4.002 28 O -0.080 6.080 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.160 0.840 41 H 0.125 0.875 42 H 0.091 0.909 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.244 0.756 46 H 0.218 0.782 47 H 0.319 0.681 Dipole moment (debyes) X Y Z Total from point charges -5.491 -1.593 -21.875 22.610 hybrid contribution -1.143 0.035 1.387 1.798 sum -6.634 -1.558 -20.488 21.591 Atomic orbital electron populations 1.21920 0.93183 1.01810 1.02930 1.20900 0.96843 0.96109 0.93503 1.21901 1.01080 0.93748 1.03136 1.21829 1.00626 0.99126 0.96838 1.21158 0.99423 0.79179 0.94440 0.90747 1.22501 0.99803 0.98346 0.87033 1.59993 1.65289 1.05902 1.00674 1.21551 0.99447 0.98072 0.87595 1.20948 0.83889 0.87634 0.85196 1.90505 1.45568 1.28623 1.86537 1.41918 1.49991 1.24336 1.04675 1.19673 1.34327 1.06931 0.85375 0.90571 1.25996 0.96450 0.97557 1.01090 1.69667 1.38886 1.22413 1.25002 0.84908 0.78280 0.77987 0.77392 1.19994 1.19672 1.19426 1.45792 1.28805 1.08733 1.51448 1.16332 0.83108 0.81642 0.79254 1.90883 1.24915 1.80674 1.45330 1.23102 0.92054 0.97082 1.06060 1.23790 1.00538 0.86326 0.98961 1.70490 1.06162 1.30851 1.17839 1.29602 0.98423 0.79805 0.92408 1.84516 1.38999 1.26877 1.57582 0.91188 0.91611 0.93220 0.92971 0.91223 0.91081 0.94396 0.92125 0.93550 0.87833 0.91944 0.84039 0.87459 0.90895 0.76873 0.91277 0.75562 0.78245 0.68065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.97 71.98 0.57 -1.28 16 2 C -0.07 -1.18 0.62 -52.18 -0.03 -1.21 16 3 C -0.14 -1.96 8.12 71.98 0.58 -1.38 16 4 C -0.13 -2.49 6.99 71.98 0.50 -1.98 16 5 C 0.16 3.36 1.84 44.99 0.08 3.44 16 6 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 7 C 0.05 1.02 4.58 86.30 0.40 1.42 16 8 N -0.69 -20.14 6.12 -517.94 -3.17 -23.30 16 9 C 0.07 2.08 6.17 85.56 0.53 2.61 16 10 C 0.44 20.26 7.82 87.66 0.69 20.94 16 11 O -0.63 -34.59 15.78 -3.06 -0.05 -34.64 16 12 N -0.57 -28.75 5.29 -306.99 -1.62 -30.37 16 13 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 14 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 15 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 16 N -0.92 -48.79 13.05 21.67 0.28 -48.51 16 17 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 21 N -0.70 -14.86 3.48 -446.47 -1.55 -16.41 16 22 C 0.61 15.52 6.13 86.46 0.53 16.05 16 23 O -0.54 -16.34 13.99 -4.29 -0.06 -16.40 16 24 C -0.13 -2.96 7.18 24.04 0.17 -2.79 16 25 C 0.05 1.05 11.66 83.97 0.98 2.03 16 26 N -0.53 -10.99 11.26 -315.09 -3.55 -14.53 16 27 C 0.22 3.23 13.21 130.42 1.72 4.95 16 28 O -0.19 -3.70 10.57 -7.09 -0.07 -3.78 16 29 H 0.07 0.79 6.32 -2.39 -0.02 0.78 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.70 7.60 -2.39 -0.02 0.68 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.85 6.54 -2.39 -0.02 0.83 16 35 H 0.04 0.84 5.76 -2.39 -0.01 0.82 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 1.08 7.52 -2.39 -0.02 1.06 16 38 H 0.10 1.84 6.71 -2.39 -0.02 1.83 16 39 H 0.06 0.97 6.17 -2.39 -0.01 0.96 16 40 H 0.34 10.68 7.28 -89.70 -0.65 10.02 16 41 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.40 18.78 7.90 -92.71 -0.73 18.04 16 44 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 45 H 0.41 7.57 7.95 -92.71 -0.74 6.83 16 46 H 0.20 4.07 8.06 -2.91 -0.02 4.05 16 47 H 0.30 0.72 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -75.49 385.64 -0.84 -76.34 By element: Atomic # 1 Polarization: 43.35 SS G_CDS: -1.09 Total: 42.26 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 8.01 Total: 24.69 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -9.61 Total: -133.12 kcal Atomic # 8 Polarization: -54.64 SS G_CDS: -0.18 Total: -54.82 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -75.49 -0.84 -76.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507992079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.419 kcal (2) G-P(sol) polarization free energy of solvation -75.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds