Wall clock time and date at job start Tue Mar 31 2020 21:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47005 * 2 1 4 4 C 1.52997 * 109.46833 * 240.00130 * 2 1 3 5 5 C 1.52999 * 109.46786 * 120.00066 * 2 1 3 6 6 H 1.09002 * 109.47140 * 299.99684 * 5 2 1 7 7 C 1.53003 * 109.46786 * 180.02562 * 5 2 1 8 8 N 1.46896 * 109.47034 * 184.99911 * 7 5 2 9 9 C 1.46902 * 111.00080 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47126 * 179.97438 * 9 8 7 11 11 O 1.21295 * 120.00225 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00030 * 180.02562 * 10 9 8 13 13 C 1.37094 * 119.99916 * 179.97438 * 12 10 9 14 14 H 1.08004 * 120.00414 * 0.02562 * 13 12 10 15 15 C 1.38952 * 120.00248 * 179.97438 * 13 12 10 16 16 N 1.31424 * 119.99473 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00432 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47414 * 60.00134 * 17 15 13 19 19 H 1.48504 * 109.47003 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47029 * 300.00019 * 17 15 13 21 21 N 1.46496 * 109.47175 * 60.00133 * 5 2 1 22 22 C 1.34777 * 119.99867 * 274.99460 * 21 5 2 23 23 O 1.21686 * 120.00193 * 0.27780 * 22 21 5 24 24 C 1.46726 * 119.99990 * 180.02562 * 22 21 5 25 25 C 1.36342 * 126.64139 * 180.02562 * 24 22 21 26 26 N 1.33691 * 107.45144 * 179.97438 * 25 24 22 27 27 C 1.30615 * 108.99629 * 359.97438 * 26 25 24 28 28 O 1.33674 * 109.15522 * 359.77031 * 27 26 25 29 29 H 1.08997 * 109.47344 * 300.00496 * 1 2 3 30 30 H 1.09007 * 109.47175 * 59.99917 * 1 2 3 31 31 H 1.09002 * 109.47129 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47204 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47232 * 299.99500 * 3 2 1 34 34 H 1.09002 * 109.47375 * 60.00037 * 3 2 1 35 35 H 1.09002 * 109.47185 * 299.99871 * 4 2 1 36 36 H 1.08993 * 109.47834 * 59.99981 * 4 2 1 37 37 H 1.09003 * 109.46829 * 180.02562 * 4 2 1 38 38 H 1.08999 * 109.47357 * 304.99904 * 7 5 2 39 39 H 1.09004 * 109.47198 * 64.99625 * 7 5 2 40 40 H 1.00904 * 111.00020 * 56.04422 * 8 7 5 41 41 H 1.09000 * 109.47017 * 300.00022 * 9 8 7 42 42 H 1.09000 * 109.46956 * 60.00131 * 9 8 7 43 43 H 0.96996 * 119.99555 * 359.97438 * 12 10 9 44 44 H 0.97002 * 119.99442 * 179.97438 * 16 15 13 45 45 H 0.96999 * 120.00085 * 95.00065 * 21 5 2 46 46 H 1.07998 * 126.27883 * 359.96430 * 25 24 22 47 47 H 1.08002 * 125.42486 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 1.6766 -0.2074 2.1392 7 6 3.5700 -0.7207 1.2496 8 7 4.0597 -1.5151 2.3840 9 6 5.5282 -1.5376 2.4161 10 6 5.9924 -2.3594 3.5909 11 8 5.1799 -2.8760 4.3286 12 7 7.3105 -2.5203 3.8219 13 6 7.7328 -3.2675 4.8909 14 1 7.0093 -3.7275 5.5478 15 6 9.0916 -3.4340 5.1288 16 7 9.9720 -2.8746 4.3292 17 14 9.6671 -4.4526 6.5850 18 1 9.1537 -5.8397 6.4526 19 1 11.1516 -4.4748 6.6177 20 1 9.1536 -3.8526 7.8426 21 7 1.5516 -2.1024 1.2492 22 6 0.3297 -2.3852 1.7425 23 8 -0.3700 -1.4925 2.1833 24 6 -0.1592 -3.7686 1.7430 25 6 -1.3654 -4.2052 2.2050 26 7 -1.4108 -5.5283 2.0194 27 6 -0.2933 -5.9188 1.4673 28 8 0.4972 -4.8574 1.2790 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 3.9337 -1.1547 0.3182 39 1 3.9329 0.3032 1.3393 40 1 3.6845 -2.4514 2.3586 41 1 5.9050 -1.9775 1.4928 42 1 5.9050 -0.5195 2.5138 43 1 7.9601 -2.1075 3.2317 44 1 10.9206 -2.9905 4.4955 45 1 2.1078 -2.8135 0.8942 46 1 -2.1419 -3.5942 2.6411 47 1 -0.0486 -6.9365 1.2012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507992080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:08 Heat of formation + Delta-G solvation = -48.169268 kcal Electronic energy + Delta-G solvation = -29811.562233 eV Core-core repulsion = 25610.282334 eV Total energy + Delta-G solvation = -4201.279900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.67661 -40.53310 -38.38799 -37.79719 -35.28222 -35.15726 -33.94340 -33.58404 -31.26319 -30.82109 -29.20875 -27.54878 -27.24526 -26.20603 -24.48761 -23.81940 -22.97368 -22.11538 -21.05683 -19.38664 -19.20035 -18.52897 -17.89979 -17.17135 -17.10729 -16.47883 -16.18900 -15.85633 -15.45091 -14.66597 -14.65796 -14.53538 -14.40617 -14.22028 -13.93774 -13.84907 -13.72706 -13.48519 -13.12750 -12.58830 -12.51857 -12.32840 -11.93528 -11.83507 -11.78959 -11.69107 -11.55375 -11.44401 -11.33186 -11.14615 -11.03917 -10.94884 -10.64983 -10.46211 -10.39284 -10.23845 -9.52700 -9.45106 -9.16573 -8.50285 -8.12411 -7.98976 -6.44426 -3.85323 0.58111 2.17384 2.19600 2.89441 2.94685 3.18266 3.24154 3.28617 3.86036 3.87258 3.97079 4.21590 4.46676 4.61131 4.66511 4.69247 4.73495 4.95098 5.03575 5.17310 5.21923 5.23780 5.27797 5.31010 5.42575 5.49696 5.53363 5.63394 5.68664 5.73930 5.77586 5.82502 5.88693 5.89854 5.90020 6.01364 6.07937 6.21725 6.24739 6.30499 7.05791 7.09531 7.30711 7.52510 7.53599 7.83324 8.03101 8.58261 9.15093 9.51044 10.02563 10.73194 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.002826 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.257030 B = 9906.766910 C =11912.410063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 C -0.142 4.142 4 C -0.145 4.145 5 C 0.159 3.841 6 H 0.103 0.897 7 C 0.046 3.954 8 N -0.667 5.667 9 C 0.050 3.950 10 C 0.439 3.561 11 O -0.583 6.583 12 N -0.562 5.562 13 C -0.300 4.300 14 H 0.102 0.898 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 N -0.706 5.706 22 C 0.613 3.387 23 O -0.509 6.509 24 C -0.106 4.106 25 C 0.050 3.950 26 N -0.496 5.496 27 C 0.201 3.799 28 O -0.190 6.190 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.038 0.962 39 H 0.092 0.908 40 H 0.347 0.653 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.402 0.598 46 H 0.196 0.804 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.446 2.290 -14.604 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.080 4.080 3 C -0.200 4.200 4 C -0.202 4.202 5 C 0.055 3.945 6 H 0.121 0.879 7 C -0.084 4.084 8 N -0.300 5.300 9 C -0.082 4.082 10 C 0.225 3.775 11 O -0.467 6.467 12 N -0.199 5.199 13 C -0.430 4.430 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.198 1.198 21 N -0.356 5.356 22 C 0.398 3.602 23 O -0.385 6.385 24 C -0.162 4.162 25 C -0.093 4.093 26 N -0.224 5.224 27 C -0.024 4.024 28 O -0.076 6.076 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.110 0.890 40 H 0.166 0.834 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.237 0.763 46 H 0.213 0.787 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -17.723 2.696 -13.201 22.263 hybrid contribution 1.883 -0.968 -0.751 2.246 sum -15.840 1.728 -13.952 21.180 Atomic orbital electron populations 1.21904 0.93544 1.01868 1.01641 1.20955 0.96624 0.95745 0.94707 1.21899 1.01251 0.94603 1.02222 1.21945 1.01157 1.00207 0.96892 1.21207 0.93213 0.81114 0.99015 0.87916 1.22432 0.93046 1.00441 0.92460 1.60025 1.07266 1.19942 1.42727 1.21687 0.88219 1.01106 0.97200 1.19793 0.83403 0.86155 0.88199 1.90535 1.53245 1.52794 1.50093 1.41847 1.04990 1.46073 1.27000 1.19657 0.91614 1.26764 1.04966 0.87988 1.25262 0.95585 0.98092 0.98930 1.69609 1.02223 1.44419 1.38077 0.85916 0.77239 0.79991 0.81077 1.19912 1.20951 1.19846 1.45841 1.16922 1.10714 1.62087 1.16203 0.81991 0.83817 0.78171 1.90907 1.56491 1.44268 1.46878 1.23291 0.95515 0.87994 1.09392 1.23599 0.96500 0.90484 0.98702 1.70456 1.22846 1.11937 1.17139 1.28435 0.84493 0.93571 0.95920 1.84516 1.44266 1.16143 1.62644 0.91579 0.93428 0.93054 0.92107 0.92398 0.92101 0.92855 0.92573 0.92169 0.94451 0.89022 0.83353 0.93857 0.89423 0.77466 0.91800 0.76315 0.78661 0.72827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 6.99 37.16 0.26 -1.05 16 2 C -0.08 -0.69 0.62 -154.51 -0.10 -0.79 16 3 C -0.14 -1.12 8.12 37.16 0.30 -0.82 16 4 C -0.14 -1.13 7.97 37.16 0.30 -0.84 16 5 C 0.16 1.69 1.83 -67.93 -0.12 1.56 16 6 H 0.10 1.34 7.58 -51.93 -0.39 0.94 16 7 C 0.05 0.50 4.58 -3.82 -0.02 0.49 16 8 N -0.67 -10.20 6.12 -115.06 -0.70 -10.91 16 9 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 10 C 0.44 10.21 7.82 -10.99 -0.09 10.13 16 11 O -0.58 -15.77 15.78 5.54 0.09 -15.68 16 12 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 13 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 14 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 15 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 16 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 17 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 N -0.71 -7.55 3.47 -55.10 -0.19 -7.74 16 22 C 0.61 7.54 6.15 -12.83 -0.08 7.46 16 23 O -0.51 -7.29 13.99 5.20 0.07 -7.22 16 24 C -0.11 -1.22 7.18 -36.84 -0.26 -1.48 16 25 C 0.05 0.55 11.66 -17.43 -0.20 0.35 16 26 N -0.50 -5.36 11.26 -14.67 -0.17 -5.52 16 27 C 0.20 1.64 13.21 52.25 0.69 2.33 16 28 O -0.19 -1.90 10.57 4.41 0.05 -1.86 16 29 H 0.07 0.74 7.52 -51.93 -0.39 0.35 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.56 5.77 -51.93 -0.30 0.26 16 32 H 0.06 0.45 6.55 -51.93 -0.34 0.11 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.43 7.60 -51.93 -0.39 0.04 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.45 6.32 -51.93 -0.33 0.12 16 38 H 0.04 0.36 6.17 -51.93 -0.32 0.04 16 39 H 0.09 0.95 6.71 -51.93 -0.35 0.60 16 40 H 0.35 5.54 7.28 -39.29 -0.29 5.25 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.40 3.87 7.95 -40.82 -0.32 3.54 16 46 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 47 H 0.26 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -33.88 385.67 -5.63 -39.51 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -6.64 Total: 15.19 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 0.41 Total: 10.19 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.39 Total: -61.89 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.21 Total: -24.75 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.88 -5.63 -39.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507992080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.657 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds