Wall clock time and date at job start Tue Mar 31 2020 21:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47005 * 2 1 4 4 C 1.52997 * 109.46833 * 240.00130 * 2 1 3 5 5 C 1.52999 * 109.46786 * 120.00066 * 2 1 3 6 6 H 1.09002 * 109.47140 * 299.99684 * 5 2 1 7 7 C 1.53003 * 109.46786 * 180.02562 * 5 2 1 8 8 N 1.46896 * 109.47034 * 184.99911 * 7 5 2 9 9 C 1.46902 * 111.00080 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47126 * 179.97438 * 9 8 7 11 11 O 1.21295 * 120.00225 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00030 * 180.02562 * 10 9 8 13 13 C 1.37094 * 119.99916 * 179.97438 * 12 10 9 14 14 H 1.08004 * 120.00414 * 0.02562 * 13 12 10 15 15 C 1.38952 * 120.00248 * 179.97438 * 13 12 10 16 16 N 1.31424 * 119.99473 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00432 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47414 * 60.00134 * 17 15 13 19 19 H 1.48504 * 109.47003 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47029 * 300.00019 * 17 15 13 21 21 N 1.46496 * 109.47175 * 60.00133 * 5 2 1 22 22 C 1.34777 * 119.99867 * 274.99460 * 21 5 2 23 23 O 1.21686 * 120.00193 * 0.27780 * 22 21 5 24 24 C 1.46726 * 119.99990 * 180.02562 * 22 21 5 25 25 C 1.36342 * 126.64139 * 180.02562 * 24 22 21 26 26 N 1.33691 * 107.45144 * 179.97438 * 25 24 22 27 27 C 1.30615 * 108.99629 * 359.97438 * 26 25 24 28 28 O 1.33674 * 109.15522 * 359.77031 * 27 26 25 29 29 H 1.08997 * 109.47344 * 300.00496 * 1 2 3 30 30 H 1.09007 * 109.47175 * 59.99917 * 1 2 3 31 31 H 1.09002 * 109.47129 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47204 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47232 * 299.99500 * 3 2 1 34 34 H 1.09002 * 109.47375 * 60.00037 * 3 2 1 35 35 H 1.09002 * 109.47185 * 299.99871 * 4 2 1 36 36 H 1.08993 * 109.47834 * 59.99981 * 4 2 1 37 37 H 1.09003 * 109.46829 * 180.02562 * 4 2 1 38 38 H 1.08999 * 109.47357 * 304.99904 * 7 5 2 39 39 H 1.09004 * 109.47198 * 64.99625 * 7 5 2 40 40 H 1.00904 * 111.00020 * 56.04422 * 8 7 5 41 41 H 1.09000 * 109.47017 * 300.00022 * 9 8 7 42 42 H 1.09000 * 109.46956 * 60.00131 * 9 8 7 43 43 H 0.96996 * 119.99555 * 359.97438 * 12 10 9 44 44 H 0.97002 * 119.99442 * 179.97438 * 16 15 13 45 45 H 0.96999 * 120.00085 * 95.00065 * 21 5 2 46 46 H 1.07998 * 126.27883 * 359.96430 * 25 24 22 47 47 H 1.08002 * 125.42486 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 1.6766 -0.2074 2.1392 7 6 3.5700 -0.7207 1.2496 8 7 4.0597 -1.5151 2.3840 9 6 5.5282 -1.5376 2.4161 10 6 5.9924 -2.3594 3.5909 11 8 5.1799 -2.8760 4.3286 12 7 7.3105 -2.5203 3.8219 13 6 7.7328 -3.2675 4.8909 14 1 7.0093 -3.7275 5.5478 15 6 9.0916 -3.4340 5.1288 16 7 9.9720 -2.8746 4.3292 17 14 9.6671 -4.4526 6.5850 18 1 9.1537 -5.8397 6.4526 19 1 11.1516 -4.4748 6.6177 20 1 9.1536 -3.8526 7.8426 21 7 1.5516 -2.1024 1.2492 22 6 0.3297 -2.3852 1.7425 23 8 -0.3700 -1.4925 2.1833 24 6 -0.1592 -3.7686 1.7430 25 6 -1.3654 -4.2052 2.2050 26 7 -1.4108 -5.5283 2.0194 27 6 -0.2933 -5.9188 1.4673 28 8 0.4972 -4.8574 1.2790 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 3.9337 -1.1547 0.3182 39 1 3.9329 0.3032 1.3393 40 1 3.6845 -2.4514 2.3586 41 1 5.9050 -1.9775 1.4928 42 1 5.9050 -0.5195 2.5138 43 1 7.9601 -2.1075 3.2317 44 1 10.9206 -2.9905 4.4955 45 1 2.1078 -2.8135 0.8942 46 1 -2.1419 -3.5942 2.6411 47 1 -0.0486 -6.9365 1.2012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507992080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:07 Heat of formation + Delta-G solvation = -76.688891 kcal Electronic energy + Delta-G solvation = -29812.798937 eV Core-core repulsion = 25610.282334 eV Total energy + Delta-G solvation = -4202.516603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.45176 -41.43174 -40.12476 -38.80353 -36.43549 -36.05430 -35.73671 -34.60946 -33.26384 -31.66612 -30.30576 -28.18846 -28.07988 -27.62391 -25.88727 -24.93133 -23.76098 -23.05682 -21.94614 -21.12834 -20.01553 -19.95121 -19.33036 -18.05339 -17.91516 -17.77500 -17.20714 -16.92998 -16.79411 -16.39350 -15.91495 -15.59097 -15.38413 -15.28106 -15.16421 -14.94460 -14.62210 -14.51789 -14.27125 -14.02645 -13.52286 -13.39418 -13.16858 -13.06349 -12.87568 -12.72658 -12.59359 -12.58791 -12.43886 -12.29873 -12.16208 -12.11425 -11.96946 -11.68795 -11.50834 -11.42491 -11.31598 -10.38922 -10.29520 -10.01771 -9.98941 -9.31758 -8.47157 -5.95707 -0.23084 1.39149 1.39290 1.41529 1.42425 1.52011 1.99416 2.05442 2.11665 2.28631 2.85535 3.20387 3.25572 3.46261 3.65807 3.79830 3.85973 3.88922 3.99346 4.17614 4.28107 4.34967 4.43463 4.48055 4.53188 4.58473 4.60676 4.70594 4.77211 4.83006 4.91321 4.96670 5.06532 5.08243 5.17676 5.19997 5.26641 5.35808 5.40301 5.49404 5.54363 5.85304 6.07699 6.20958 6.33763 6.51567 6.60116 6.93652 7.12518 7.56308 8.12104 8.69903 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.002826 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.257030 B = 9906.766910 C =11912.410063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.162 3.838 6 H 0.074 0.926 7 C 0.052 3.948 8 N -0.686 5.686 9 C 0.066 3.934 10 C 0.435 3.565 11 O -0.626 6.626 12 N -0.571 5.571 13 C -0.335 4.335 14 H 0.077 0.923 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 0.990 3.010 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.274 1.274 21 N -0.698 5.698 22 C 0.611 3.389 23 O -0.539 6.539 24 C -0.127 4.127 25 C 0.046 3.954 26 N -0.525 5.525 27 C 0.222 3.778 28 O -0.194 6.194 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.341 0.659 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.408 0.592 46 H 0.201 0.799 47 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.499 1.952 -16.289 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.199 4.199 4 C -0.198 4.198 5 C 0.058 3.942 6 H 0.093 0.907 7 C -0.077 4.077 8 N -0.319 5.319 9 C -0.067 4.067 10 C 0.223 3.777 11 O -0.512 6.512 12 N -0.209 5.209 13 C -0.465 4.465 14 H 0.095 0.905 15 C -0.211 4.211 16 N -0.560 5.560 17 Si 0.814 3.186 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.199 1.199 21 N -0.348 5.348 22 C 0.397 3.603 23 O -0.418 6.418 24 C -0.183 4.183 25 C -0.096 4.096 26 N -0.253 5.253 27 C -0.002 4.002 28 O -0.080 6.080 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.160 0.840 41 H 0.091 0.909 42 H 0.125 0.875 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.244 0.756 46 H 0.218 0.782 47 H 0.319 0.681 Dipole moment (debyes) X Y Z Total from point charges -16.759 2.379 -14.923 22.566 hybrid contribution 1.518 -0.912 -0.249 1.788 sum -15.242 1.467 -15.172 21.556 Atomic orbital electron populations 1.21828 0.94481 1.00858 1.01235 1.20897 0.95731 0.96414 0.94296 1.21902 1.01851 0.93696 1.02420 1.21920 1.01683 0.99879 0.96357 1.21157 0.93125 0.80993 0.98929 0.90743 1.22502 0.92776 1.00480 0.91937 1.59996 1.06338 1.20062 1.45455 1.21552 0.89252 1.00822 0.95038 1.20949 0.82358 0.85311 0.89084 1.90505 1.54186 1.54453 1.52097 1.41905 1.05929 1.46296 1.26738 1.19611 0.91941 1.28626 1.06329 0.90524 1.25999 0.95144 0.98702 1.01209 1.69663 1.02593 1.44719 1.38996 0.85028 0.77361 0.78420 0.77781 1.19632 1.19394 1.19943 1.45789 1.16462 1.11025 1.61491 1.16336 0.82154 0.84032 0.77822 1.90883 1.57332 1.45249 1.48322 1.23103 0.95969 0.88147 1.11074 1.23788 0.96592 0.91011 0.98230 1.70483 1.24375 1.11660 1.18819 1.29600 0.83119 0.94570 0.92956 1.84519 1.44478 1.16192 1.62785 0.93551 0.92143 0.94394 0.91087 0.91225 0.92966 0.93224 0.91616 0.91191 0.91952 0.87836 0.84040 0.90900 0.87467 0.76878 0.91259 0.75563 0.78243 0.68071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 6.99 71.98 0.50 -1.98 16 2 C -0.07 -1.18 0.62 -52.18 -0.03 -1.21 16 3 C -0.14 -1.97 8.12 71.98 0.58 -1.38 16 4 C -0.14 -1.86 7.97 71.98 0.57 -1.28 16 5 C 0.16 3.36 1.83 44.99 0.08 3.44 16 6 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 7 C 0.05 1.02 4.58 86.31 0.40 1.42 16 8 N -0.69 -20.13 6.12 -517.93 -3.17 -23.30 16 9 C 0.07 2.08 6.17 85.56 0.53 2.61 16 10 C 0.44 20.24 7.82 87.66 0.69 20.92 16 11 O -0.63 -34.55 15.78 -3.08 -0.05 -34.60 16 12 N -0.57 -28.73 5.29 -306.98 -1.62 -30.35 16 13 C -0.34 -18.91 9.68 84.04 0.81 -18.10 16 14 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 15 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 16 N -0.92 -48.86 13.05 21.67 0.28 -48.58 16 17 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 N -0.70 -14.85 3.47 -446.46 -1.55 -16.40 16 22 C 0.61 15.52 6.15 86.46 0.53 16.05 16 23 O -0.54 -16.33 13.99 -4.30 -0.06 -16.39 16 24 C -0.13 -2.97 7.18 24.05 0.17 -2.79 16 25 C 0.05 1.05 11.66 83.97 0.98 2.03 16 26 N -0.53 -11.00 11.26 -315.09 -3.55 -14.54 16 27 C 0.22 3.24 13.21 130.42 1.72 4.96 16 28 O -0.19 -3.70 10.57 -7.15 -0.08 -3.78 16 29 H 0.05 1.08 7.52 -2.39 -0.02 1.06 16 30 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.04 0.84 5.77 -2.39 -0.01 0.82 16 32 H 0.07 0.85 6.55 -2.39 -0.02 0.83 16 33 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.70 7.60 -2.39 -0.02 0.68 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.80 6.32 -2.39 -0.02 0.78 16 38 H 0.06 0.97 6.17 -2.39 -0.01 0.96 16 39 H 0.10 1.84 6.71 -2.39 -0.02 1.83 16 40 H 0.34 10.67 7.28 -89.69 -0.65 10.02 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.40 18.79 7.90 -92.71 -0.73 18.06 16 44 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 45 H 0.41 7.57 7.95 -92.71 -0.74 6.83 16 46 H 0.20 4.07 8.06 -2.91 -0.02 4.05 16 47 H 0.30 0.73 8.06 -2.91 -0.02 0.71 16 Total: -1.00 -75.33 385.67 -0.84 -76.18 By element: Atomic # 1 Polarization: 43.64 SS G_CDS: -1.09 Total: 42.55 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: 8.01 Total: 24.59 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -9.61 Total: -133.18 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -0.18 Total: -54.77 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -75.33 -0.84 -76.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507992080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.513 kcal (2) G-P(sol) polarization free energy of solvation -75.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds