Wall clock time and date at job start Tue Mar 31 2020 21:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47191 * 2 1 4 4 C 1.53004 * 109.46497 * 240.00131 * 2 1 3 5 5 O 1.45195 * 109.47121 * 120.00662 * 2 1 3 6 6 C 1.34227 * 117.00442 * 59.99746 * 5 2 1 7 7 O 1.20832 * 119.99996 * 0.02562 * 6 5 2 8 8 C 1.50697 * 120.00467 * 180.02562 * 6 5 2 9 9 N 1.46495 * 109.47431 * 179.97438 * 8 6 5 10 10 C 1.34820 * 126.59519 * 125.00213 * 9 8 6 11 11 C 1.36597 * 106.83727 * 180.24451 * 10 9 8 12 12 C 1.47527 * 125.76547 * 179.71308 * 11 10 9 13 13 O 1.21593 * 120.00047 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99610 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00232 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47474 * 180.02562 * 15 14 12 17 17 C 1.53007 * 109.46953 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46621 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00582 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99571 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00330 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99884 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47410 * 89.99918 * 22 20 18 24 24 H 1.48505 * 109.46917 * 209.99527 * 22 20 18 25 25 H 1.48497 * 109.47072 * 329.99509 * 22 20 18 26 26 N 1.34396 * 108.45930 * 359.56394 * 11 10 9 27 27 N 1.28759 * 109.52721 * 0.44454 * 26 11 10 28 28 H 1.09002 * 109.47057 * 299.99326 * 1 2 3 29 29 H 1.09002 * 109.47694 * 59.99751 * 1 2 3 30 30 H 1.09006 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47269 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47689 * 300.00363 * 3 2 1 33 33 H 1.09007 * 109.47023 * 60.00262 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99756 * 4 2 1 35 35 H 1.09001 * 109.46961 * 60.00508 * 4 2 1 36 36 H 1.09004 * 109.46607 * 179.97438 * 4 2 1 37 37 H 1.09003 * 109.47263 * 59.99759 * 8 6 5 38 38 H 1.09007 * 109.46982 * 299.99857 * 8 6 5 39 39 H 1.08002 * 126.57680 * 359.97185 * 10 9 8 40 40 H 0.97003 * 120.00203 * 359.97438 * 14 12 11 41 41 H 1.09006 * 109.46702 * 300.00219 * 15 14 12 42 42 H 1.08996 * 109.47356 * 59.99751 * 15 14 12 43 43 H 1.08992 * 109.46977 * 299.99709 * 16 15 14 44 44 H 1.08997 * 109.47082 * 60.00406 * 16 15 14 45 45 H 1.09006 * 109.47024 * 299.99891 * 17 16 15 46 46 H 1.08994 * 109.47056 * 59.99590 * 17 16 15 47 47 H 0.97001 * 120.00230 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1854 6 6 1.6533 -1.9685 1.3377 7 8 0.9566 -2.5029 0.5076 8 6 2.1173 -2.7436 2.5439 9 7 1.5931 -4.1100 2.4777 10 6 2.3107 -5.2498 2.5352 11 6 1.4224 -6.2823 2.4315 12 6 1.7636 -7.7176 2.4410 13 8 2.9236 -8.0660 2.5478 14 7 0.7895 -8.6424 2.3312 15 6 1.1281 -10.0677 2.3412 16 6 -0.1504 -10.8967 2.2027 17 6 0.2035 -12.3853 2.2125 18 6 -1.0558 -13.2017 2.0754 19 1 -2.0127 -12.7084 1.9903 20 6 -0.9863 -14.5786 2.0597 21 7 0.1790 -15.1795 2.1638 22 14 -2.5472 -15.5907 1.8906 23 1 -2.8246 -15.8362 0.4525 24 1 -2.3733 -16.8893 2.5898 25 1 -3.6844 -14.8515 2.4950 26 7 0.1849 -5.7696 2.3227 27 7 0.2484 -4.4838 2.3428 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 -1.7489 -1.2494 35 1 1.6765 -0.2073 -2.1393 36 1 3.1299 -0.7209 -1.2496 37 1 1.7531 -2.2586 3.4496 38 1 3.2069 -2.7725 2.5602 39 1 3.3827 -5.3309 2.6386 40 1 -0.1360 -8.3644 2.2464 41 1 1.7958 -10.2883 1.5083 42 1 1.6233 -10.3170 3.2796 43 1 -0.8183 -10.6762 3.0353 44 1 -0.6451 -10.6474 1.2640 45 1 0.8713 -12.6054 1.3796 46 1 0.6985 -12.6348 3.1508 47 1 0.2279 -16.1482 2.1524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537618921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:21 Heat of formation + Delta-G solvation = -60.867654 kcal Electronic energy + Delta-G solvation = -28057.704813 eV Core-core repulsion = 23855.874270 eV Total energy + Delta-G solvation = -4201.830543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.36257 -41.93251 -40.44345 -38.31128 -36.97790 -35.84643 -35.20163 -35.04290 -33.09946 -32.04431 -30.09712 -28.53745 -28.43921 -28.32571 -25.58773 -24.62629 -23.89343 -22.76410 -22.28122 -21.47104 -20.71404 -19.24216 -18.57193 -18.50475 -17.73284 -17.35266 -17.10278 -16.99666 -16.87896 -16.43458 -16.39282 -15.75168 -15.49582 -15.31737 -15.04886 -14.92762 -14.61219 -14.26664 -14.15511 -13.75179 -13.48672 -13.42661 -13.27081 -13.10148 -13.00651 -12.91564 -12.74611 -12.55254 -12.53109 -12.48782 -12.37119 -12.24216 -11.72538 -11.67075 -11.65508 -11.47608 -11.27710 -11.08327 -11.04823 -10.53668 -10.48162 -10.06232 -8.18263 -6.29248 0.00070 0.58413 0.76290 0.99350 1.42192 1.43426 1.54566 1.58894 2.11214 2.20627 2.43518 3.11178 3.15314 3.28788 3.46500 3.68567 3.72624 3.77558 3.90142 3.91565 4.03323 4.15532 4.23063 4.28080 4.52271 4.54689 4.57242 4.62262 4.71785 4.77760 4.82877 4.86068 4.95858 4.98106 5.10456 5.17675 5.20636 5.24493 5.24584 5.38635 5.43320 5.53499 5.72806 5.85722 6.24261 6.40997 6.60876 6.84529 6.87551 7.10043 7.39889 8.93650 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026357 B = 0.001564 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.064405 B =17898.629781 C =18411.839357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.114 3.886 3 C -0.136 4.136 4 C -0.182 4.182 5 O -0.342 6.342 6 C 0.448 3.552 7 O -0.511 6.511 8 C 0.127 3.873 9 N -0.353 5.353 10 C 0.125 3.875 11 C -0.123 4.123 12 C 0.601 3.399 13 O -0.570 6.570 14 N -0.706 5.706 15 C 0.131 3.869 16 C -0.105 4.105 17 C 0.025 3.975 18 C -0.544 4.544 19 H 0.063 0.937 20 C -0.001 4.001 21 N -0.932 5.932 22 Si 0.966 3.034 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.263 1.263 26 N -0.225 5.225 27 N -0.065 5.065 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.174 0.826 38 H 0.199 0.801 39 H 0.249 0.751 40 H 0.414 0.586 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.063 0.937 45 H -0.005 1.005 46 H -0.003 1.003 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.673 40.226 -0.686 40.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.078 3.922 3 C -0.193 4.193 4 C -0.239 4.239 5 O -0.259 6.259 6 C 0.289 3.711 7 O -0.399 6.399 8 C 0.007 3.993 9 N -0.139 5.139 10 C -0.031 4.031 11 C -0.261 4.261 12 C 0.386 3.614 13 O -0.449 6.449 14 N -0.356 5.356 15 C 0.008 3.992 16 C -0.143 4.143 17 C -0.013 4.013 18 C -0.582 4.582 19 H 0.081 0.919 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.790 3.210 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.187 1.187 26 N -0.099 5.099 27 N -0.045 5.045 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.191 0.809 38 H 0.216 0.784 39 H 0.265 0.735 40 H 0.250 0.750 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.014 0.986 46 H 0.015 0.985 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.919 40.231 -1.021 40.835 hybrid contribution -0.263 -1.243 -0.343 1.316 sum 6.656 38.988 -1.364 39.576 Atomic orbital electron populations 1.22474 0.94320 1.03305 1.03877 1.22456 0.94249 0.93413 0.82046 1.21878 1.02716 0.90437 1.04282 1.22470 1.02139 1.01679 0.97607 1.86497 1.69491 1.23807 1.46071 1.23717 0.77901 0.81834 0.87625 1.90754 1.35063 1.70433 1.43622 1.21902 1.04978 0.75376 0.97079 1.50111 1.06751 1.07593 1.49420 1.23902 1.01322 0.83151 0.94685 1.21398 0.90188 0.95465 1.19087 1.17013 0.84807 0.83635 0.75936 1.90783 1.19798 1.81740 1.52586 1.45873 1.10903 1.06264 1.72565 1.21343 0.98037 0.78381 1.01484 1.21624 0.95657 0.95190 1.01831 1.18936 0.95855 0.91078 0.95396 1.21685 0.94368 0.92067 1.50032 0.91890 1.25979 0.99577 0.99490 0.94807 1.70102 1.26059 1.09695 1.51407 0.85435 0.79360 0.77769 0.78391 1.19885 1.20796 1.18713 1.74649 1.21850 1.02776 1.10653 1.82037 0.95841 1.05208 1.21438 0.91295 0.89626 0.92586 0.90648 0.88793 0.90773 0.92690 0.89649 0.91080 0.80924 0.78444 0.73462 0.74989 0.92349 0.92087 0.91640 0.91834 0.98618 0.98474 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 8.37 71.98 0.60 -1.61 16 2 C 0.11 1.15 1.13 -10.79 -0.01 1.14 16 3 C -0.14 -0.62 8.85 71.98 0.64 0.02 16 4 C -0.18 -2.10 8.37 71.98 0.60 -1.50 16 5 O -0.34 -3.47 9.89 -51.39 -0.51 -3.98 16 6 C 0.45 5.58 7.30 71.24 0.52 6.10 16 7 O -0.51 -11.02 11.24 21.95 0.25 -10.78 16 8 C 0.13 0.59 7.13 85.63 0.61 1.20 16 9 N -0.35 -5.37 3.41 -350.83 -1.20 -6.56 16 10 C 0.13 2.02 11.27 83.85 0.95 2.97 16 11 C -0.12 -3.16 6.99 40.82 0.29 -2.87 16 12 C 0.60 18.86 7.82 86.69 0.68 19.54 16 13 O -0.57 -20.42 16.86 -4.01 -0.07 -20.49 16 14 N -0.71 -22.64 5.55 -466.28 -2.59 -25.23 16 15 C 0.13 4.83 5.67 86.38 0.49 5.32 16 16 C -0.11 -4.31 5.27 30.60 0.16 -4.15 16 17 C 0.03 1.33 4.97 29.85 0.15 1.48 16 18 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 19 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 20 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 21 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 22 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 25 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 26 N -0.22 -6.34 12.04 -49.99 -0.60 -6.94 16 27 N -0.06 -1.62 12.89 37.02 0.48 -1.15 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 1.05 5.89 -2.38 -0.01 1.03 16 31 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 34 H 0.05 0.98 5.89 -2.39 -0.01 0.97 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.17 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.20 -1.08 8.08 -2.38 -0.02 -1.10 16 39 H 0.25 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.41 12.15 8.16 -92.71 -0.76 11.39 16 41 H 0.06 2.25 8.14 -2.38 -0.02 2.24 16 42 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 46 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -83.27 399.86 4.67 -78.61 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.23 Total: 9.72 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 6.36 Total: -2.90 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -3.62 Total: -97.02 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.33 Total: -35.24 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -83.27 4.67 -78.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537618921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.741 kcal (2) G-P(sol) polarization free energy of solvation -83.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds