Wall clock time and date at job start Tue Mar 31 2020 21:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47142 * 2 1 4 4 N 1.46901 * 109.46865 * 179.97438 * 3 2 1 5 5 C 1.46897 * 111.00327 * 59.16164 * 4 3 2 6 6 C 1.53001 * 109.46991 * 66.04350 * 5 4 3 7 7 N 1.46500 * 109.46898 * 180.02562 * 6 5 4 8 8 C 1.34783 * 119.99952 * 179.97438 * 7 6 5 9 9 O 1.21617 * 119.99708 * 0.02562 * 8 7 6 10 10 C 1.47416 * 119.99948 * 180.02562 * 8 7 6 11 11 N 1.36065 * 126.44947 * 359.68625 * 10 8 7 12 12 C 1.29939 * 108.47397 * 179.86194 * 11 10 8 13 13 O 1.34044 * 109.24444 * 0.41059 * 12 11 10 14 14 C 1.34261 * 108.22890 * 359.74119 * 13 12 11 15 15 C 1.50692 * 126.52521 * 179.97438 * 14 13 12 16 16 C 1.46900 * 111.00061 * 295.20746 * 4 3 2 17 17 C 1.50709 * 109.47108 * 288.24511 * 16 4 3 18 18 O 1.21295 * 119.99707 * 354.29658 * 17 16 4 19 19 N 1.34774 * 119.99718 * 174.30279 * 17 16 4 20 20 C 1.37105 * 119.99577 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99536 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99915 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99909 * 179.97438 * 22 20 19 24 24 Si 1.86792 * 119.99989 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47349 * 90.00141 * 24 22 20 26 26 H 1.48500 * 109.47149 * 210.00093 * 24 22 20 27 27 H 1.48500 * 109.47495 * 329.99954 * 24 22 20 28 28 H 1.08997 * 109.47146 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47457 * 300.00220 * 1 2 3 30 30 H 1.09003 * 109.47108 * 59.99588 * 1 2 3 31 31 H 1.09001 * 109.47022 * 240.00090 * 2 1 3 32 32 H 1.09005 * 109.46984 * 119.99891 * 2 1 3 33 33 H 1.09002 * 109.46877 * 59.93398 * 3 2 1 34 34 H 1.08994 * 109.46748 * 299.93314 * 3 2 1 35 35 H 1.09006 * 109.47006 * 306.04702 * 5 4 3 36 36 H 1.08997 * 109.47474 * 186.04896 * 5 4 3 37 37 H 1.08992 * 109.47037 * 60.00435 * 6 5 4 38 38 H 1.09001 * 109.47208 * 299.99843 * 6 5 4 39 39 H 0.97004 * 120.00420 * 0.02562 * 7 6 5 40 40 H 1.08002 * 125.37408 * 180.12013 * 12 11 10 41 41 H 1.08997 * 109.47414 * 270.04798 * 15 14 13 42 42 H 1.09005 * 109.47512 * 30.04982 * 15 14 13 43 43 H 1.09004 * 109.46984 * 150.04625 * 15 14 13 44 44 H 1.09001 * 109.47527 * 48.23953 * 16 4 3 45 45 H 1.08994 * 109.47254 * 168.24720 * 16 4 3 46 46 H 0.96994 * 120.00805 * 359.97438 * 19 17 16 47 47 H 0.97003 * 119.99888 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.7393 -1.1765 6 6 3.6725 1.5193 -2.4416 7 7 4.1976 0.8177 -3.6156 8 6 3.9967 1.3235 -4.8487 9 8 3.3799 2.3625 -4.9866 10 6 4.5245 0.6171 -6.0301 11 7 5.2337 -0.5441 -6.0277 12 6 5.5199 -0.8542 -7.2566 13 8 5.0226 0.0828 -8.0761 14 6 4.3992 1.0070 -7.3279 15 6 3.6955 2.2414 -7.8297 16 6 4.0349 0.8585 1.2418 17 6 3.7992 1.8120 2.3848 18 8 3.3422 2.9149 2.1702 19 7 4.0963 1.4393 3.6454 20 6 3.8824 2.3069 4.6852 21 1 3.4761 3.2892 4.4940 22 6 4.1882 1.9224 5.9850 23 7 3.9836 2.7542 6.9816 24 14 4.8901 0.2233 6.3157 25 1 6.3725 0.2782 6.2478 26 1 4.4729 -0.2302 7.6668 27 1 4.3828 -0.7291 5.2955 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6757 1.9567 0.8894 34 1 1.6776 1.9559 -0.8906 35 1 3.6016 -0.2592 -1.2280 36 1 5.1202 0.6601 -1.0974 37 1 4.1069 2.5176 -2.3902 38 1 2.5883 1.5983 -2.5208 39 1 4.6892 -0.0113 -3.5056 40 1 6.0752 -1.7266 -7.5682 41 1 4.4028 3.0694 -7.8763 42 1 3.2929 2.0511 -8.8247 43 1 2.8814 2.4967 -7.1512 44 1 3.5261 -0.0839 1.4441 45 1 5.1044 0.6782 1.1338 46 1 4.4615 0.5572 3.8172 47 1 4.1967 2.4857 7.8890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567423769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:13 Heat of formation + Delta-G solvation = -38.844500 kcal Electronic energy + Delta-G solvation = -28844.276811 eV Core-core repulsion = 24643.401263 eV Total energy + Delta-G solvation = -4200.875547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.87035 -39.83704 -39.02984 -37.33773 -35.32027 -34.94389 -33.88764 -32.80477 -32.69968 -31.63200 -29.88098 -27.87383 -27.18725 -25.43617 -24.39232 -23.44479 -22.77871 -22.11254 -20.84736 -20.21147 -19.21659 -18.47922 -18.14312 -17.33917 -16.65650 -16.32272 -16.11276 -15.86694 -15.56637 -15.16352 -14.98459 -14.82338 -14.46796 -14.05083 -13.82158 -13.71506 -13.52518 -13.37622 -13.23117 -13.13379 -12.85153 -12.71865 -12.25519 -11.95629 -11.81587 -11.66681 -11.60699 -11.49446 -11.35485 -11.25475 -11.19798 -11.01513 -10.58413 -10.40858 -10.31801 -9.95348 -9.51707 -9.45053 -9.14212 -8.56703 -8.14790 -7.93417 -6.28416 -3.79558 0.69044 1.62932 2.11669 2.79621 3.01341 3.03295 3.07843 3.16058 3.59243 3.78221 3.99837 4.12226 4.19933 4.45864 4.72518 4.75003 4.83028 4.92963 4.98994 5.02820 5.05760 5.14862 5.23996 5.33449 5.38579 5.40524 5.50191 5.59458 5.61157 5.64319 5.74438 5.82189 5.84587 5.92419 5.97820 5.99716 6.16352 6.17625 6.26279 6.50329 6.93005 7.11036 7.23703 7.31082 7.61392 7.91523 8.17672 8.63655 8.98684 9.45665 9.87645 10.84850 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019936 B = 0.001990 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.161701 B =14068.224152 C =14375.427263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.167 4.167 3 C 0.050 3.950 4 N -0.506 5.506 5 C 0.040 3.960 6 C 0.122 3.878 7 N -0.710 5.710 8 C 0.602 3.398 9 O -0.532 6.532 10 C -0.080 4.080 11 N -0.464 5.464 12 C 0.175 3.825 13 O -0.201 6.201 14 C 0.046 3.954 15 C -0.079 4.079 16 C 0.039 3.961 17 C 0.454 3.546 18 O -0.555 6.555 19 N -0.594 5.594 20 C -0.302 4.302 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.883 5.883 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.407 0.593 40 H 0.255 0.745 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.114 0.886 44 H 0.054 0.946 45 H 0.089 0.911 46 H 0.369 0.631 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 -11.965 -28.908 31.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.206 4.206 3 C -0.077 4.077 4 N -0.229 5.229 5 C -0.089 4.089 6 C -0.001 4.001 7 N -0.362 5.362 8 C 0.388 3.612 9 O -0.409 6.409 10 C -0.199 4.199 11 N -0.193 5.193 12 C -0.054 4.054 13 O -0.087 6.087 14 C -0.011 4.011 15 C -0.135 4.135 16 C -0.092 4.092 17 C 0.240 3.760 18 O -0.436 6.436 19 N -0.234 5.234 20 C -0.431 4.431 21 H 0.137 0.863 22 C -0.163 4.163 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.203 1.203 27 H -0.196 1.196 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.242 0.758 40 H 0.271 0.729 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.132 0.868 44 H 0.072 0.928 45 H 0.108 0.892 46 H 0.202 0.798 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.028 -10.242 -28.379 30.188 hybrid contribution 0.642 -2.601 0.058 2.680 sum 1.671 -12.843 -28.320 31.141 Atomic orbital electron populations 1.21645 0.95327 1.01277 1.02109 1.22231 0.97015 0.99665 1.01662 1.22399 0.86233 0.94792 1.04303 1.61651 1.08117 1.53117 1.00013 1.22288 1.00749 0.95655 0.90219 1.21386 0.99686 0.96664 0.82375 1.45699 1.57043 1.27898 1.05518 1.16633 0.79298 0.83668 0.81630 1.90813 1.41505 1.22857 1.85712 1.21490 1.07592 0.96502 0.94355 1.70728 1.13536 1.12496 1.22523 1.28012 0.99661 0.94885 0.82853 1.84389 1.54646 1.29658 1.39996 1.23809 0.95494 0.92467 0.89300 1.20637 1.00614 0.89260 1.03012 1.21965 1.00798 0.96185 0.90249 1.19627 0.84482 0.88904 0.83024 1.90566 1.47425 1.22063 1.83564 1.42216 1.59014 1.15706 1.06457 1.19421 1.40493 0.99013 0.84167 0.86281 1.25032 0.97901 0.97989 0.95340 1.69624 1.47628 1.35371 0.99666 0.86679 0.79979 0.84061 0.78687 1.19658 1.20261 1.19587 0.93137 0.92266 0.92811 0.92196 0.91786 0.88655 0.90709 0.93796 0.90210 0.89888 0.90873 0.75757 0.72896 0.88797 0.90041 0.86796 0.92775 0.89249 0.79831 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.17 -2.06 5.29 -26.73 -0.14 -2.20 16 3 C 0.05 0.75 4.80 -3.82 -0.02 0.73 16 4 N -0.51 -7.75 4.31 -236.07 -1.02 -8.76 16 5 C 0.04 0.45 4.81 -3.83 -0.02 0.43 16 6 C 0.12 1.44 5.60 -4.04 -0.02 1.42 16 7 N -0.71 -7.59 5.55 -61.38 -0.34 -7.93 16 8 C 0.60 7.29 7.81 -12.52 -0.10 7.19 16 9 O -0.53 -7.62 14.80 5.26 0.08 -7.54 16 10 C -0.08 -0.83 6.99 -83.02 -0.58 -1.41 16 11 N -0.46 -4.22 11.06 -11.48 -0.13 -4.35 16 12 C 0.17 1.04 13.19 51.96 0.69 1.72 16 13 O -0.20 -1.48 10.73 6.52 0.07 -1.41 16 14 C 0.05 0.40 7.44 -35.08 -0.26 0.14 16 15 C -0.08 -0.52 9.88 36.00 0.36 -0.17 16 16 C 0.04 0.64 5.34 -4.97 -0.03 0.61 16 17 C 0.45 10.20 7.36 -10.98 -0.08 10.12 16 18 O -0.56 -14.79 14.70 5.54 0.08 -14.71 16 19 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 20 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 21 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 22 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 23 N -0.88 -25.86 13.96 55.50 0.77 -25.09 16 24 Si 0.88 19.38 27.73 -169.99 -4.71 14.66 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.66 6.26 -51.93 -0.33 0.34 16 32 H 0.06 0.84 6.30 -51.93 -0.33 0.51 16 33 H 0.10 1.76 6.54 -51.93 -0.34 1.42 16 34 H 0.07 1.05 6.51 -51.93 -0.34 0.71 16 35 H 0.04 0.45 5.98 -51.93 -0.31 0.14 16 36 H 0.08 0.84 7.86 -51.93 -0.41 0.44 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 0.91 6.57 -51.93 -0.34 0.57 16 39 H 0.41 3.71 8.20 -40.82 -0.33 3.37 16 40 H 0.26 0.16 8.06 -52.49 -0.42 -0.26 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.11 0.91 6.48 -51.93 -0.34 0.58 16 44 H 0.05 0.78 5.97 -51.93 -0.31 0.47 16 45 H 0.09 1.27 7.81 -51.93 -0.41 0.86 16 46 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 385.59 15.07 5.81 5.81 Total: -1.00 -35.60 385.59 -6.05 -41.66 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -6.53 Total: 12.14 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -0.09 Total: 9.63 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.77 Total: -60.24 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.23 Total: -23.66 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.60 -6.05 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567423769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.813 kcal (2) G-P(sol) polarization free energy of solvation -35.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds