Wall clock time and date at job start Tue Mar 31 2020 21:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47142 * 2 1 4 4 N 1.46901 * 109.46865 * 179.97438 * 3 2 1 5 5 C 1.46897 * 111.00327 * 59.16164 * 4 3 2 6 6 C 1.53001 * 109.46991 * 66.04350 * 5 4 3 7 7 N 1.46500 * 109.46898 * 180.02562 * 6 5 4 8 8 C 1.34783 * 119.99952 * 179.97438 * 7 6 5 9 9 O 1.21617 * 119.99708 * 0.02562 * 8 7 6 10 10 C 1.47416 * 119.99948 * 180.02562 * 8 7 6 11 11 N 1.36065 * 126.44947 * 359.68625 * 10 8 7 12 12 C 1.29939 * 108.47397 * 179.86194 * 11 10 8 13 13 O 1.34044 * 109.24444 * 0.41059 * 12 11 10 14 14 C 1.34261 * 108.22890 * 359.74119 * 13 12 11 15 15 C 1.50692 * 126.52521 * 179.97438 * 14 13 12 16 16 C 1.46900 * 111.00061 * 295.20746 * 4 3 2 17 17 C 1.50709 * 109.47108 * 288.24511 * 16 4 3 18 18 O 1.21295 * 119.99707 * 354.29658 * 17 16 4 19 19 N 1.34774 * 119.99718 * 174.30279 * 17 16 4 20 20 C 1.37105 * 119.99577 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99536 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99915 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99909 * 179.97438 * 22 20 19 24 24 Si 1.86792 * 119.99989 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47349 * 90.00141 * 24 22 20 26 26 H 1.48500 * 109.47149 * 210.00093 * 24 22 20 27 27 H 1.48500 * 109.47495 * 329.99954 * 24 22 20 28 28 H 1.08997 * 109.47146 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47457 * 300.00220 * 1 2 3 30 30 H 1.09003 * 109.47108 * 59.99588 * 1 2 3 31 31 H 1.09001 * 109.47022 * 240.00090 * 2 1 3 32 32 H 1.09005 * 109.46984 * 119.99891 * 2 1 3 33 33 H 1.09002 * 109.46877 * 59.93398 * 3 2 1 34 34 H 1.08994 * 109.46748 * 299.93314 * 3 2 1 35 35 H 1.09006 * 109.47006 * 306.04702 * 5 4 3 36 36 H 1.08997 * 109.47474 * 186.04896 * 5 4 3 37 37 H 1.08992 * 109.47037 * 60.00435 * 6 5 4 38 38 H 1.09001 * 109.47208 * 299.99843 * 6 5 4 39 39 H 0.97004 * 120.00420 * 0.02562 * 7 6 5 40 40 H 1.08002 * 125.37408 * 180.12013 * 12 11 10 41 41 H 1.08997 * 109.47414 * 270.04798 * 15 14 13 42 42 H 1.09005 * 109.47512 * 30.04982 * 15 14 13 43 43 H 1.09004 * 109.46984 * 150.04625 * 15 14 13 44 44 H 1.09001 * 109.47527 * 48.23953 * 16 4 3 45 45 H 1.08994 * 109.47254 * 168.24720 * 16 4 3 46 46 H 0.96994 * 120.00805 * 359.97438 * 19 17 16 47 47 H 0.97003 * 119.99888 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.7393 -1.1765 6 6 3.6725 1.5193 -2.4416 7 7 4.1976 0.8177 -3.6156 8 6 3.9967 1.3235 -4.8487 9 8 3.3799 2.3625 -4.9866 10 6 4.5245 0.6171 -6.0301 11 7 5.2337 -0.5441 -6.0277 12 6 5.5199 -0.8542 -7.2566 13 8 5.0226 0.0828 -8.0761 14 6 4.3992 1.0070 -7.3279 15 6 3.6955 2.2414 -7.8297 16 6 4.0349 0.8585 1.2418 17 6 3.7992 1.8120 2.3848 18 8 3.3422 2.9149 2.1702 19 7 4.0963 1.4393 3.6454 20 6 3.8824 2.3069 4.6852 21 1 3.4761 3.2892 4.4940 22 6 4.1882 1.9224 5.9850 23 7 3.9836 2.7542 6.9816 24 14 4.8901 0.2233 6.3157 25 1 6.3725 0.2782 6.2478 26 1 4.4729 -0.2302 7.6668 27 1 4.3828 -0.7291 5.2955 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6757 1.9567 0.8894 34 1 1.6776 1.9559 -0.8906 35 1 3.6016 -0.2592 -1.2280 36 1 5.1202 0.6601 -1.0974 37 1 4.1069 2.5176 -2.3902 38 1 2.5883 1.5983 -2.5208 39 1 4.6892 -0.0113 -3.5056 40 1 6.0752 -1.7266 -7.5682 41 1 4.4028 3.0694 -7.8763 42 1 3.2929 2.0511 -8.8247 43 1 2.8814 2.4967 -7.1512 44 1 3.5261 -0.0839 1.4441 45 1 5.1044 0.6782 1.1338 46 1 4.4615 0.5572 3.8172 47 1 4.1967 2.4857 7.8890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567423769.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:12 Heat of formation + Delta-G solvation = -70.564028 kcal Electronic energy + Delta-G solvation = -28845.652273 eV Core-core repulsion = 24643.401263 eV Total energy + Delta-G solvation = -4202.251009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.44110 -40.88360 -40.43697 -38.80536 -36.13336 -35.91414 -35.69926 -33.82387 -33.63521 -33.37987 -30.98010 -28.90389 -28.11316 -26.84335 -25.62241 -24.47755 -23.70255 -22.79676 -21.71381 -21.45472 -20.97811 -19.98339 -19.20552 -17.93180 -17.74560 -17.45187 -17.17592 -17.00292 -16.75193 -16.63833 -16.03962 -15.68780 -15.46640 -15.22540 -15.14197 -14.94669 -14.77361 -14.40269 -14.36772 -14.21454 -13.96770 -13.92847 -13.37059 -13.22374 -13.10854 -12.75134 -12.67027 -12.53678 -12.40734 -12.39473 -12.37555 -12.12081 -11.96736 -11.86801 -11.53237 -11.34459 -11.27840 -10.38476 -10.27851 -10.21072 -9.87293 -9.13388 -8.38995 -5.99442 0.03221 1.04738 1.30594 1.36840 1.45238 1.55921 1.95222 2.01089 2.19762 2.24635 2.72115 3.10538 3.17031 3.30062 3.63002 3.74245 3.84665 3.95236 3.99431 4.12103 4.19441 4.24695 4.34662 4.39296 4.41251 4.44799 4.50564 4.57307 4.66236 4.79995 4.84892 4.87754 4.96217 4.99836 5.08530 5.17741 5.18523 5.21180 5.31795 5.39719 5.55486 5.90247 6.01995 6.14876 6.26147 6.57546 6.62992 6.91986 7.05768 7.43596 8.02257 8.78876 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019936 B = 0.001990 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.161701 B =14068.224152 C =14375.427263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.157 4.157 3 C 0.055 3.945 4 N -0.533 5.533 5 C 0.049 3.951 6 C 0.131 3.869 7 N -0.700 5.700 8 C 0.597 3.403 9 O -0.564 6.564 10 C -0.107 4.107 11 N -0.492 5.492 12 C 0.196 3.804 13 O -0.200 6.200 14 C 0.045 3.955 15 C -0.078 4.078 16 C 0.053 3.947 17 C 0.453 3.547 18 O -0.606 6.606 19 N -0.594 5.594 20 C -0.324 4.324 21 H 0.053 0.947 22 C -0.018 4.018 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.257 1.257 26 H -0.277 1.277 27 H -0.230 1.230 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.417 0.583 40 H 0.305 0.695 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.123 0.877 46 H 0.389 0.611 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -16.722 -31.284 35.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C -0.073 4.073 4 N -0.256 5.256 5 C -0.079 4.079 6 C 0.007 3.993 7 N -0.351 5.351 8 C 0.384 3.616 9 O -0.444 6.444 10 C -0.225 4.225 11 N -0.220 5.220 12 C -0.032 4.032 13 O -0.086 6.086 14 C -0.013 4.013 15 C -0.134 4.134 16 C -0.078 4.078 17 C 0.240 3.760 18 O -0.490 6.490 19 N -0.236 5.236 20 C -0.454 4.454 21 H 0.071 0.929 22 C -0.217 4.217 23 N -0.578 5.578 24 Si 0.786 3.214 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.153 1.153 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.254 0.746 40 H 0.319 0.681 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.141 0.859 46 H 0.224 0.776 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.813 -15.032 -30.773 34.364 hybrid contribution 0.062 -0.998 0.674 1.206 sum 2.874 -16.030 -30.099 34.222 Atomic orbital electron populations 1.21648 0.94870 1.02262 1.01580 1.22145 0.97418 0.97529 1.02507 1.22234 0.86508 0.96386 1.02168 1.61498 1.08282 1.54891 1.00953 1.22270 1.01711 0.95990 0.87895 1.21170 0.98985 0.95907 0.83261 1.45554 1.56751 1.27994 1.04814 1.16960 0.78846 0.83408 0.82427 1.90792 1.43018 1.24315 1.86270 1.21330 1.09289 0.97712 0.94177 1.70695 1.14694 1.12379 1.24239 1.29180 0.97478 0.94771 0.81807 1.84426 1.54587 1.29681 1.39952 1.24074 0.95162 0.92967 0.89061 1.20660 1.00157 0.88864 1.03731 1.21877 1.03231 0.94887 0.87843 1.20936 0.81865 0.89162 0.84023 1.90550 1.48992 1.24907 1.84519 1.42032 1.59788 1.15902 1.05924 1.18975 1.42015 0.97901 0.86475 0.92871 1.26131 0.97579 1.03834 0.94113 1.69815 1.48920 1.38569 1.00475 0.85355 0.79487 0.77244 0.79358 1.18130 1.20184 1.15346 0.91310 0.94049 0.92224 0.89915 0.92006 0.93236 0.90486 0.91278 0.88508 0.92295 0.91759 0.74564 0.68072 0.88106 0.87647 0.88567 0.89721 0.85929 0.77571 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.91 71.98 0.71 -2.41 16 2 C -0.16 -3.54 5.29 30.59 0.16 -3.38 16 3 C 0.05 1.64 4.80 86.30 0.41 2.05 16 4 N -0.53 -15.63 4.31 -900.78 -3.88 -19.52 16 5 C 0.05 0.99 4.81 86.30 0.41 1.40 16 6 C 0.13 2.99 5.60 86.38 0.48 3.47 16 7 N -0.70 -14.15 5.55 -466.37 -2.59 -16.74 16 8 C 0.60 14.34 7.81 86.66 0.68 15.01 16 9 O -0.56 -16.66 14.80 -4.09 -0.06 -16.72 16 10 C -0.11 -2.12 6.99 40.41 0.28 -1.84 16 11 N -0.49 -7.83 11.06 -305.15 -3.37 -11.20 16 12 C 0.20 1.68 13.19 130.52 1.72 3.40 16 13 O -0.20 -2.43 10.73 0.40 0.00 -2.43 16 14 C 0.04 0.73 7.44 25.18 0.19 0.91 16 15 C -0.08 -0.97 9.88 71.23 0.70 -0.27 16 16 C 0.05 1.58 5.34 85.56 0.46 2.03 16 17 C 0.45 20.50 7.36 87.66 0.65 21.15 16 18 O -0.61 -34.11 14.70 -3.08 -0.05 -34.15 16 19 N -0.59 -28.06 5.09 -306.97 -1.56 -29.63 16 20 C -0.32 -19.16 10.16 84.04 0.85 -18.31 16 21 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 22 C -0.02 -1.03 5.50 84.93 0.47 -0.57 16 23 N -0.94 -57.11 13.96 21.66 0.30 -56.80 16 24 Si 0.97 38.89 27.73 68.60 1.90 40.79 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 26 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 27 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.51 6.26 -2.39 -0.01 1.50 16 32 H 0.06 1.43 6.30 -2.38 -0.02 1.42 16 33 H 0.05 1.93 6.54 -2.39 -0.02 1.91 16 34 H 0.08 2.20 6.51 -2.39 -0.02 2.19 16 35 H 0.07 1.10 5.98 -2.38 -0.01 1.08 16 36 H 0.10 1.68 7.86 -2.39 -0.02 1.66 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.59 6.57 -2.39 -0.02 1.57 16 39 H 0.42 6.69 8.20 -92.71 -0.76 5.93 16 40 H 0.30 -1.12 8.06 -2.91 -0.02 -1.15 16 41 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.10 1.59 6.48 -2.38 -0.02 1.57 16 44 H 0.09 2.09 5.97 -2.39 -0.01 2.07 16 45 H 0.12 2.94 7.81 -2.39 -0.02 2.92 16 46 H 0.39 15.09 5.76 -92.71 -0.53 14.56 16 47 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -86.34 385.59 -1.44 -87.78 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.32 Total: 35.96 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: 8.18 Total: 22.65 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -11.10 Total: -133.88 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.10 Total: -53.30 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 1.90 Total: 40.79 kcal Total: -86.34 -1.44 -87.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567423769.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.215 kcal (2) G-P(sol) polarization free energy of solvation -86.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds