Wall clock time and date at job start Tue Mar 31 2020 21:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47273 * 2 1 4 4 C 1.52998 * 109.47204 * 120.00363 * 2 1 3 5 5 C 1.52998 * 109.47220 * 175.00262 * 4 2 1 6 6 H 1.09001 * 109.47276 * 54.99741 * 5 4 2 7 7 C 1.53002 * 109.47228 * 175.00037 * 5 4 2 8 8 N 1.46896 * 109.47506 * 174.99649 * 7 5 4 9 9 C 1.46899 * 111.00365 * 179.97438 * 8 7 5 10 10 C 1.50697 * 109.47112 * 179.97438 * 9 8 7 11 11 O 1.21293 * 120.00185 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99820 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00338 * 180.02562 * 12 10 9 14 14 H 1.08010 * 119.99745 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00497 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00193 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47350 * 89.99827 * 17 15 13 19 19 H 1.48502 * 109.47198 * 210.00260 * 17 15 13 20 20 H 1.48509 * 109.46918 * 329.99958 * 17 15 13 21 21 N 1.46500 * 109.46810 * 294.99569 * 5 4 2 22 22 C 1.34775 * 119.99817 * 85.00416 * 21 5 4 23 23 O 1.21680 * 120.00005 * 359.97438 * 22 21 5 24 24 C 1.46728 * 120.00046 * 179.97438 * 22 21 5 25 25 C 1.36337 * 126.64293 * 180.02562 * 24 22 21 26 26 N 1.33695 * 107.44965 * 180.02562 * 25 24 22 27 27 C 1.30620 * 108.99730 * 359.97438 * 26 25 24 28 28 O 1.33665 * 109.15088 * 0.24955 * 27 26 25 29 29 H 1.09004 * 109.47401 * 300.00011 * 1 2 3 30 30 H 1.09009 * 109.47310 * 60.00071 * 1 2 3 31 31 H 1.09004 * 109.47548 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47401 * 239.99988 * 2 1 3 33 33 H 1.09000 * 109.47429 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47237 * 300.00105 * 3 2 1 35 35 H 1.09004 * 109.46917 * 59.99692 * 3 2 1 36 36 H 1.08992 * 109.47205 * 54.99679 * 4 2 1 37 37 H 1.09007 * 109.46861 * 295.00121 * 4 2 1 38 38 H 1.09008 * 109.46648 * 295.00150 * 7 5 4 39 39 H 1.09004 * 109.47038 * 54.99300 * 7 5 4 40 40 H 1.00896 * 111.00022 * 303.95505 * 8 7 5 41 41 H 1.09004 * 109.46788 * 300.00443 * 9 8 7 42 42 H 1.09000 * 109.46606 * 60.00065 * 9 8 7 43 43 H 0.97007 * 119.99875 * 0.02562 * 12 10 9 44 44 H 0.96995 * 119.99933 * 180.02562 * 16 15 13 45 45 H 0.97005 * 120.00203 * 264.99629 * 21 5 4 46 46 H 1.07996 * 126.27616 * 359.97438 * 25 24 22 47 47 H 1.08002 * 125.42040 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1879 6 1 3.9953 0.1611 1.0527 7 6 4.0851 -1.4395 2.4918 8 7 5.5343 -1.6558 2.3872 9 6 6.0701 -2.2398 3.6240 10 6 7.5557 -2.4473 3.4791 11 8 8.1134 -2.1386 2.4472 12 7 8.2648 -2.9749 4.4965 13 6 9.6163 -3.1633 4.3650 14 1 10.1130 -2.8884 3.4461 15 6 10.3474 -3.7078 5.4137 16 7 9.7431 -4.0427 6.5315 17 14 12.1890 -3.9637 5.2347 18 1 12.9050 -2.7469 5.6953 19 1 12.6095 -5.1266 6.0570 20 1 12.5167 -4.2210 3.8092 21 7 3.9479 -1.6872 0.0625 22 6 4.0651 -1.1630 -1.1735 23 8 3.8523 0.0213 -1.3548 24 6 4.4494 -2.0203 -2.3006 25 6 4.6074 -1.6353 -3.5989 26 7 4.9596 -2.7188 -4.2984 27 6 5.0244 -3.7436 -3.4910 28 8 4.7105 -3.3474 -2.2536 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6053 -1.7198 1.2951 37 1 1.7516 -0.1584 2.1370 38 1 3.8778 -0.7595 3.3181 39 1 3.5876 -2.3925 2.6720 40 1 5.7573 -2.2313 1.5890 41 1 5.8767 -1.5650 4.4579 42 1 5.5864 -3.1982 3.8124 43 1 7.8188 -3.2215 5.3220 44 1 10.2534 -4.4225 7.2638 45 1 4.1173 -2.6313 0.2070 46 1 4.4721 -0.6380 -3.9906 47 1 5.2852 -4.7514 -3.7784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568332253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:16 Heat of formation + Delta-G solvation = -52.148746 kcal Electronic energy + Delta-G solvation = -29478.582369 eV Core-core repulsion = 25277.129906 eV Total energy + Delta-G solvation = -4201.452463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.67327 -40.34008 -38.35117 -37.22130 -35.59767 -35.22897 -34.11844 -33.63567 -31.32741 -31.11652 -29.90533 -27.39606 -27.14332 -25.18011 -24.53770 -23.40621 -22.98380 -21.60496 -20.76741 -20.10998 -19.36421 -18.72212 -17.91743 -17.22008 -17.10170 -16.52355 -16.19971 -15.88414 -15.41853 -14.70604 -14.64015 -14.59234 -14.36364 -14.30286 -14.02493 -13.74461 -13.65353 -13.51752 -13.23503 -12.55128 -12.45749 -12.33103 -11.97155 -11.83117 -11.78755 -11.78202 -11.53709 -11.43954 -11.15702 -11.06048 -10.91131 -10.66895 -10.55926 -10.41725 -10.31118 -10.24674 -9.54071 -9.44425 -9.19190 -8.51968 -8.14667 -7.99549 -6.44894 -3.85744 0.58365 2.17341 2.20076 2.89047 2.95426 3.15792 3.24641 3.30301 3.85822 3.87012 3.96448 4.21129 4.52777 4.66038 4.66986 4.80264 4.82178 4.99097 5.04196 5.14349 5.21645 5.23394 5.29567 5.34836 5.41509 5.52974 5.58019 5.61179 5.68343 5.72702 5.81119 5.88024 5.89437 5.91069 5.94096 6.11649 6.21325 6.25657 6.32151 6.47738 7.07058 7.08292 7.31056 7.52213 7.52611 7.84918 8.02873 8.57730 9.14778 9.50632 10.02006 10.72828 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.002620 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.255368 B =10685.868786 C =12540.107088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.126 4.126 5 C 0.145 3.855 6 H 0.107 0.893 7 C 0.050 3.950 8 N -0.667 5.667 9 C 0.050 3.950 10 C 0.439 3.561 11 O -0.583 6.583 12 N -0.563 5.563 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.270 1.270 21 N -0.707 5.707 22 C 0.611 3.389 23 O -0.503 6.503 24 C -0.106 4.106 25 C 0.050 3.950 26 N -0.496 5.496 27 C 0.201 3.799 28 O -0.190 6.190 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.033 0.967 40 H 0.347 0.653 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.402 0.598 46 H 0.196 0.804 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.938 1.554 -12.319 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.198 4.198 4 C -0.165 4.165 5 C 0.041 3.959 6 H 0.124 0.876 7 C -0.080 4.080 8 N -0.300 5.300 9 C -0.082 4.082 10 C 0.225 3.775 11 O -0.467 6.467 12 N -0.199 5.199 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.358 5.358 22 C 0.396 3.604 23 O -0.380 6.380 24 C -0.162 4.162 25 C -0.093 4.093 26 N -0.224 5.224 27 C -0.024 4.024 28 O -0.076 6.076 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.051 0.949 40 H 0.167 0.833 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.237 0.763 46 H 0.213 0.787 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -18.346 3.092 -13.338 22.891 hybrid contribution 0.342 -1.884 1.234 2.278 sum -18.004 1.208 -12.104 21.728 Atomic orbital electron populations 1.21864 0.95963 1.01093 1.01507 1.21142 0.94645 0.97337 0.98083 1.21857 1.02882 0.94802 1.00242 1.22080 0.94267 1.01005 0.99110 1.21312 0.94344 0.96131 0.84089 0.87558 1.22302 0.88857 0.99916 0.96975 1.60011 1.10104 1.54745 1.05117 1.21694 0.95139 0.98115 0.93298 1.19789 0.87956 0.84234 0.85560 1.90535 1.71433 1.55304 1.29392 1.41859 1.08500 1.54891 1.14697 1.19702 0.82792 1.38623 1.01792 0.87939 1.25262 1.00651 0.97043 0.94952 1.69608 1.36993 1.43107 1.04604 0.85859 0.82109 0.77866 0.78471 1.20342 1.20913 1.19420 1.45893 1.69334 1.13211 1.07365 1.16264 0.77259 0.85938 0.80944 1.90909 1.50119 1.13550 1.83377 1.23317 1.12744 0.81718 0.98409 1.23594 0.97726 0.99371 0.88604 1.70457 1.18518 0.98968 1.34467 1.28431 0.96403 1.01145 0.76466 1.84515 1.64895 1.23519 1.34665 0.92896 0.92962 0.93283 0.90928 0.90611 0.93450 0.93930 0.91789 0.90533 0.89186 0.94890 0.83292 0.89384 0.93831 0.77461 0.91846 0.76329 0.78671 0.72847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.19 37.15 0.34 -0.87 16 2 C -0.09 -0.90 2.38 -90.62 -0.22 -1.11 16 3 C -0.14 -1.46 8.03 37.16 0.30 -1.16 16 4 C -0.13 -1.08 4.36 -26.73 -0.12 -1.19 16 5 C 0.15 1.49 2.47 -67.93 -0.17 1.32 16 6 H 0.11 1.32 5.92 -51.93 -0.31 1.01 16 7 C 0.05 0.53 5.30 -3.83 -0.02 0.51 16 8 N -0.67 -10.12 6.12 -115.06 -0.70 -10.82 16 9 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 10 C 0.44 10.19 7.82 -10.99 -0.09 10.11 16 11 O -0.58 -15.73 15.78 5.55 0.09 -15.64 16 12 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 13 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 14 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.31 13.05 55.50 0.72 -23.58 16 17 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 N -0.71 -7.35 4.30 -55.10 -0.24 -7.58 16 22 C 0.61 7.24 6.34 -12.83 -0.08 7.16 16 23 O -0.50 -6.76 11.84 5.21 0.06 -6.70 16 24 C -0.11 -1.19 7.18 -36.84 -0.26 -1.46 16 25 C 0.05 0.54 11.66 -17.43 -0.20 0.34 16 26 N -0.50 -5.32 11.26 -14.67 -0.17 -5.49 16 27 C 0.20 1.63 13.21 52.25 0.69 2.32 16 28 O -0.19 -1.89 10.57 4.43 0.05 -1.84 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.81 5.19 -51.93 -0.27 0.54 16 33 H 0.08 0.92 4.75 -51.93 -0.25 0.68 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.35 5.49 7.28 -39.29 -0.29 5.21 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.40 3.75 7.95 -40.82 -0.32 3.43 16 46 H 0.20 1.83 8.06 -52.49 -0.42 1.41 16 47 H 0.26 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 388.51 15.07 5.85 5.85 Total: -1.00 -33.62 388.51 -6.27 -39.90 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -6.76 Total: 15.29 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -0.10 Total: 8.83 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.44 Total: -61.61 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.20 Total: -24.19 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.62 -6.27 -39.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568332253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.253 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds