Wall clock time and date at job start Tue Mar 31 2020 21:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47273 * 2 1 4 4 C 1.52998 * 109.47204 * 120.00363 * 2 1 3 5 5 C 1.52998 * 109.47220 * 175.00262 * 4 2 1 6 6 H 1.09001 * 109.47276 * 54.99741 * 5 4 2 7 7 C 1.53002 * 109.47228 * 175.00037 * 5 4 2 8 8 N 1.46896 * 109.47506 * 174.99649 * 7 5 4 9 9 C 1.46899 * 111.00365 * 179.97438 * 8 7 5 10 10 C 1.50697 * 109.47112 * 179.97438 * 9 8 7 11 11 O 1.21293 * 120.00185 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99820 * 179.97438 * 10 9 8 13 13 C 1.37095 * 120.00338 * 180.02562 * 12 10 9 14 14 H 1.08010 * 119.99745 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00497 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00193 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47350 * 89.99827 * 17 15 13 19 19 H 1.48502 * 109.47198 * 210.00260 * 17 15 13 20 20 H 1.48509 * 109.46918 * 329.99958 * 17 15 13 21 21 N 1.46500 * 109.46810 * 294.99569 * 5 4 2 22 22 C 1.34775 * 119.99817 * 85.00416 * 21 5 4 23 23 O 1.21680 * 120.00005 * 359.97438 * 22 21 5 24 24 C 1.46728 * 120.00046 * 179.97438 * 22 21 5 25 25 C 1.36337 * 126.64293 * 180.02562 * 24 22 21 26 26 N 1.33695 * 107.44965 * 180.02562 * 25 24 22 27 27 C 1.30620 * 108.99730 * 359.97438 * 26 25 24 28 28 O 1.33665 * 109.15088 * 0.24955 * 27 26 25 29 29 H 1.09004 * 109.47401 * 300.00011 * 1 2 3 30 30 H 1.09009 * 109.47310 * 60.00071 * 1 2 3 31 31 H 1.09004 * 109.47548 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47401 * 239.99988 * 2 1 3 33 33 H 1.09000 * 109.47429 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47237 * 300.00105 * 3 2 1 35 35 H 1.09004 * 109.46917 * 59.99692 * 3 2 1 36 36 H 1.08992 * 109.47205 * 54.99679 * 4 2 1 37 37 H 1.09007 * 109.46861 * 295.00121 * 4 2 1 38 38 H 1.09008 * 109.46648 * 295.00150 * 7 5 4 39 39 H 1.09004 * 109.47038 * 54.99300 * 7 5 4 40 40 H 1.00896 * 111.00022 * 303.95505 * 8 7 5 41 41 H 1.09004 * 109.46788 * 300.00443 * 9 8 7 42 42 H 1.09000 * 109.46606 * 60.00065 * 9 8 7 43 43 H 0.97007 * 119.99875 * 0.02562 * 12 10 9 44 44 H 0.96995 * 119.99933 * 180.02562 * 16 15 13 45 45 H 0.97005 * 120.00203 * 264.99629 * 21 5 4 46 46 H 1.07996 * 126.27616 * 359.97438 * 25 24 22 47 47 H 1.08002 * 125.42040 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1879 6 1 3.9953 0.1611 1.0527 7 6 4.0851 -1.4395 2.4918 8 7 5.5343 -1.6558 2.3872 9 6 6.0701 -2.2398 3.6240 10 6 7.5557 -2.4473 3.4791 11 8 8.1134 -2.1386 2.4472 12 7 8.2648 -2.9749 4.4965 13 6 9.6163 -3.1633 4.3650 14 1 10.1130 -2.8884 3.4461 15 6 10.3474 -3.7078 5.4137 16 7 9.7431 -4.0427 6.5315 17 14 12.1890 -3.9637 5.2347 18 1 12.9050 -2.7469 5.6953 19 1 12.6095 -5.1266 6.0570 20 1 12.5167 -4.2210 3.8092 21 7 3.9479 -1.6872 0.0625 22 6 4.0651 -1.1630 -1.1735 23 8 3.8523 0.0213 -1.3548 24 6 4.4494 -2.0203 -2.3006 25 6 4.6074 -1.6353 -3.5989 26 7 4.9596 -2.7188 -4.2984 27 6 5.0244 -3.7436 -3.4910 28 8 4.7105 -3.3474 -2.2536 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6053 -1.7198 1.2951 37 1 1.7516 -0.1584 2.1370 38 1 3.8778 -0.7595 3.3181 39 1 3.5876 -2.3925 2.6720 40 1 5.7573 -2.2313 1.5890 41 1 5.8767 -1.5650 4.4579 42 1 5.5864 -3.1982 3.8124 43 1 7.8188 -3.2215 5.3220 44 1 10.2534 -4.4225 7.2638 45 1 4.1173 -2.6313 0.2070 46 1 4.4721 -0.6380 -3.9906 47 1 5.2852 -4.7514 -3.7784 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568332253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:15 Heat of formation + Delta-G solvation = -80.311043 kcal Electronic energy + Delta-G solvation = -29479.803577 eV Core-core repulsion = 25277.129906 eV Total energy + Delta-G solvation = -4202.673672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.43312 -41.21529 -40.12678 -38.18502 -36.61099 -36.05213 -35.86684 -34.80198 -33.26809 -32.05068 -30.77384 -28.66387 -27.93798 -26.65228 -25.48773 -24.64926 -23.74768 -22.45028 -21.62383 -21.11286 -20.86855 -19.94922 -19.53660 -18.05868 -17.89376 -17.76703 -17.29186 -16.89664 -16.77385 -16.38669 -15.94177 -15.56294 -15.41343 -15.25836 -15.08469 -14.98716 -14.73432 -14.51803 -14.37676 -13.91952 -13.49794 -13.33398 -13.14878 -13.02463 -12.97519 -12.85560 -12.58275 -12.57960 -12.42660 -12.37382 -12.13074 -11.95994 -11.71205 -11.51626 -11.42358 -11.32730 -11.20489 -10.38014 -10.26778 -10.01999 -9.98591 -9.33243 -8.47539 -5.95990 -0.20486 1.37176 1.41282 1.41389 1.44934 1.53540 2.03008 2.05236 2.15527 2.28430 2.86714 3.20117 3.26980 3.46962 3.72045 3.82763 3.88095 4.05854 4.07030 4.23999 4.26344 4.35597 4.45475 4.47497 4.55709 4.60313 4.63622 4.72074 4.75737 4.87141 4.88901 4.90893 5.07003 5.14686 5.17038 5.20009 5.38079 5.40340 5.46106 5.55850 5.64418 5.85986 6.08119 6.26022 6.34879 6.53804 6.59820 6.99563 7.12413 7.56137 8.11852 8.69811 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011471 B = 0.002620 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.255368 B =10685.868786 C =12540.107088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.136 4.136 4 C -0.117 4.117 5 C 0.150 3.850 6 H 0.082 0.918 7 C 0.054 3.946 8 N -0.686 5.686 9 C 0.065 3.935 10 C 0.435 3.565 11 O -0.626 6.626 12 N -0.572 5.572 13 C -0.334 4.334 14 H 0.076 0.924 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 0.990 3.010 18 H -0.272 1.272 19 H -0.269 1.269 20 H -0.274 1.274 21 N -0.701 5.701 22 C 0.607 3.393 23 O -0.527 6.527 24 C -0.126 4.126 25 C 0.044 3.956 26 N -0.526 5.526 27 C 0.220 3.780 28 O -0.194 6.194 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.341 0.659 41 H 0.108 0.892 42 H 0.073 0.927 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.408 0.592 46 H 0.200 0.800 47 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.039 0.287 -11.474 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.193 4.193 4 C -0.156 4.156 5 C 0.046 3.954 6 H 0.100 0.900 7 C -0.075 4.075 8 N -0.319 5.319 9 C -0.067 4.067 10 C 0.223 3.777 11 O -0.512 6.512 12 N -0.210 5.210 13 C -0.463 4.463 14 H 0.094 0.906 15 C -0.211 4.211 16 N -0.560 5.560 17 Si 0.814 3.186 18 H -0.198 1.198 19 H -0.194 1.194 20 H -0.198 1.198 21 N -0.352 5.352 22 C 0.393 3.607 23 O -0.405 6.405 24 C -0.182 4.182 25 C -0.098 4.098 26 N -0.254 5.254 27 C -0.005 4.005 28 O -0.081 6.081 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.160 0.840 41 H 0.126 0.874 42 H 0.090 0.910 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.244 0.756 46 H 0.217 0.783 47 H 0.318 0.682 Dipole moment (debyes) X Y Z Total from point charges -19.482 1.820 -12.464 23.199 hybrid contribution 0.669 -1.504 0.892 1.872 sum -18.813 0.316 -11.573 22.089 Atomic orbital electron populations 1.21819 0.94686 1.01679 1.01821 1.21097 0.95631 0.96489 0.97918 1.21794 1.01471 0.95725 1.00351 1.22021 0.92625 1.01860 0.99084 1.21257 0.95480 0.94881 0.83831 0.90000 1.22382 0.86191 1.01439 0.97451 1.59986 1.13094 1.54657 1.04166 1.21555 0.90215 1.00242 0.94674 1.20959 0.90593 0.81990 0.84144 1.90504 1.73206 1.56554 1.30964 1.41923 1.07920 1.55648 1.15465 1.19634 0.84482 1.40648 1.01564 0.90551 1.25999 1.04582 0.96165 0.94377 1.69660 1.38460 1.42957 1.04936 0.84967 0.77103 0.78257 0.78257 1.19787 1.19392 1.19837 1.45855 1.68828 1.13488 1.06996 1.16385 0.77039 0.85796 0.81480 1.90895 1.51305 1.14522 1.83824 1.23193 1.14298 0.82382 0.98287 1.23777 0.97309 0.99921 0.88782 1.70479 1.20082 0.99567 1.35285 1.29573 0.93294 1.02225 0.75362 1.84518 1.65163 1.22847 1.35529 0.91920 0.93341 0.92537 0.92761 0.92720 0.94263 0.92802 0.90404 0.89028 0.87877 0.92364 0.84002 0.87441 0.90963 0.76879 0.91266 0.75644 0.78268 0.68182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.19 71.98 0.66 -1.47 16 2 C -0.09 -1.70 2.38 -10.80 -0.03 -1.73 16 3 C -0.14 -2.84 8.03 71.98 0.58 -2.26 16 4 C -0.12 -1.77 4.36 30.59 0.13 -1.64 16 5 C 0.15 2.90 2.47 44.99 0.11 3.01 16 6 H 0.08 2.04 5.92 -2.39 -0.01 2.03 16 7 C 0.05 1.03 5.30 86.30 0.46 1.49 16 8 N -0.69 -19.88 6.12 -517.93 -3.17 -23.04 16 9 C 0.07 2.07 6.17 85.56 0.53 2.59 16 10 C 0.44 20.22 7.82 87.66 0.69 20.91 16 11 O -0.63 -34.50 15.78 -3.07 -0.05 -34.55 16 12 N -0.57 -28.79 5.29 -306.98 -1.62 -30.41 16 13 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 14 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 15 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 16 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 17 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 N -0.70 -14.27 4.30 -446.46 -1.92 -16.19 16 22 C 0.61 14.78 6.34 86.46 0.55 15.33 16 23 O -0.53 -14.89 11.84 -4.28 -0.05 -14.94 16 24 C -0.13 -2.87 7.18 24.05 0.17 -2.70 16 25 C 0.04 1.00 11.66 83.97 0.98 1.97 16 26 N -0.53 -11.01 11.26 -315.09 -3.55 -14.55 16 27 C 0.22 3.22 13.21 130.42 1.72 4.94 16 28 O -0.19 -3.70 10.57 -7.08 -0.07 -3.78 16 29 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 30 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.05 1.21 5.19 -2.38 -0.01 1.20 16 33 H 0.05 1.39 4.75 -2.39 -0.01 1.38 16 34 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.34 10.56 7.28 -89.70 -0.65 9.90 16 41 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 42 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.40 18.80 7.90 -92.70 -0.73 18.07 16 44 H 0.28 13.84 8.31 -92.71 -0.77 13.06 16 45 H 0.41 7.25 7.95 -92.70 -0.74 6.51 16 46 H 0.20 4.01 8.06 -2.91 -0.02 3.98 16 47 H 0.30 0.79 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -74.74 388.51 -1.38 -76.12 By element: Atomic # 1 Polarization: 44.09 SS G_CDS: -1.09 Total: 43.00 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 7.83 Total: 22.32 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -9.98 Total: -132.84 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -0.17 Total: -53.27 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -74.74 -1.38 -76.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568332253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.190 kcal (2) G-P(sol) polarization free energy of solvation -74.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds