Wall clock time and date at job start Tue Mar 31 2020 21:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47045 * 2 1 4 4 C 1.53004 * 109.47178 * 119.99357 * 2 1 3 5 5 H 1.09001 * 109.46686 * 60.00306 * 4 2 1 6 6 C 1.52994 * 109.47532 * 300.00543 * 4 2 1 7 7 N 1.46497 * 109.47343 * 184.99664 * 6 4 2 8 8 C 1.34774 * 120.00359 * 179.97438 * 7 6 4 9 9 O 1.21650 * 119.99890 * 5.09577 * 8 7 6 10 10 C 1.47073 * 120.00302 * 185.09714 * 8 7 6 11 11 C 1.38116 * 120.95412 * 174.34107 * 10 8 7 12 12 N 1.35846 * 119.31948 * 179.97438 * 11 10 8 13 13 C 1.46493 * 119.25189 * 180.02562 * 12 11 10 14 14 C 1.34227 * 121.49716 * 0.02562 * 12 11 10 15 15 O 1.21549 * 118.93904 * 179.97438 * 14 12 11 16 16 N 1.34405 * 122.12969 * 359.97438 * 14 12 11 17 17 C 1.46494 * 119.78448 * 180.27925 * 16 14 12 18 18 C 1.34976 * 120.43557 * 0.02562 * 16 14 12 19 19 O 1.21675 * 120.73587 * 179.97438 * 18 16 14 20 20 N 1.46494 * 109.47208 * 179.97438 * 4 2 1 21 21 C 1.36940 * 120.00448 * 275.00618 * 20 4 2 22 22 H 1.08001 * 119.99689 * 0.02562 * 21 20 4 23 23 C 1.38812 * 119.99873 * 179.97438 * 21 20 4 24 24 N 1.31617 * 119.99735 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00117 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47270 * 89.99932 * 25 23 21 27 27 H 1.48506 * 109.46895 * 209.99650 * 25 23 21 28 28 H 1.48501 * 109.47463 * 329.99473 * 25 23 21 29 29 H 1.09003 * 109.46700 * 60.00194 * 1 2 3 30 30 H 1.08993 * 109.46791 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46933 * 300.00298 * 1 2 3 32 32 H 1.09000 * 109.47348 * 240.00042 * 2 1 3 33 33 H 1.09004 * 109.47550 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47482 * 299.99969 * 3 2 1 35 35 H 1.08999 * 109.47498 * 60.00048 * 3 2 1 36 36 H 1.09002 * 109.47030 * 64.99335 * 6 4 2 37 37 H 1.08997 * 109.46948 * 304.99636 * 6 4 2 38 38 H 0.97007 * 119.99901 * 0.02562 * 7 6 4 39 39 H 1.07994 * 120.34503 * 0.02562 * 11 10 8 40 40 H 1.09006 * 109.47481 * 0.02562 * 13 12 11 41 41 H 1.08998 * 109.47451 * 119.99575 * 13 12 11 42 42 H 1.09000 * 109.47425 * 240.00009 * 13 12 11 43 43 H 1.09003 * 109.47594 * 179.72143 * 17 16 14 44 44 H 1.09000 * 109.46908 * 299.72552 * 17 16 14 45 45 H 1.09007 * 109.47488 * 59.72230 * 17 16 14 46 46 H 0.97001 * 119.99694 * 95.00717 * 20 4 2 47 47 H 0.97005 * 120.00233 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6767 -1.7488 1.2494 6 6 1.5300 0.0001 2.4985 7 7 2.1141 -0.6174 3.6917 8 6 1.8060 -0.1437 4.9152 9 8 0.9730 0.7347 5.0353 10 6 2.4768 -0.6885 6.1052 11 6 2.2630 -0.1403 7.3548 12 7 2.8995 -0.6703 8.4315 13 6 2.6712 -0.0880 9.7562 14 6 3.7330 -1.7153 8.3092 15 8 4.2784 -2.1521 9.3037 16 7 3.9840 -2.2944 7.1225 17 6 4.8983 -3.4366 7.0491 18 6 3.3953 -1.8336 5.9987 19 8 3.6189 -2.3534 4.9215 20 7 3.5050 -0.7217 1.2490 21 6 4.1893 -1.6934 0.5689 22 1 3.6489 -2.4593 0.0323 23 6 5.5774 -1.6935 0.5682 24 7 6.2351 -2.6278 -0.0851 25 14 6.5119 -0.3685 1.4957 26 1 6.7600 -0.8205 2.8883 27 1 7.8092 -0.1126 0.8198 28 1 5.7096 0.8809 1.5163 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 0.4437 -0.0768 2.5444 37 1 1.8183 1.0503 2.4549 38 1 2.7233 -1.3669 3.6011 39 1 1.5959 0.7004 7.4748 40 1 1.9725 0.7444 9.6718 41 1 2.2541 -0.8459 10.4193 42 1 3.6165 0.2705 10.1634 43 1 4.9753 -3.7746 6.0157 44 1 5.8831 -3.1374 7.4079 45 1 4.5168 -4.2479 7.6692 46 1 3.9903 -0.0336 1.7307 47 1 7.2051 -2.6282 -0.0853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568464531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:07 Heat of formation + Delta-G solvation = -51.232480 kcal Electronic energy + Delta-G solvation = -30854.335723 eV Core-core repulsion = 26652.922992 eV Total energy + Delta-G solvation = -4201.412731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.57959 -39.79841 -38.95802 -37.72824 -37.20379 -35.58598 -33.65947 -33.18405 -32.12295 -30.71418 -28.72581 -27.88455 -27.13486 -26.66313 -24.80823 -23.80621 -23.36780 -22.16385 -20.77657 -19.51602 -18.92639 -18.13900 -17.69697 -17.52951 -17.37005 -16.05552 -15.89188 -15.84972 -15.31224 -15.16829 -15.11304 -14.48737 -14.30360 -14.02903 -13.87875 -13.65382 -13.55795 -13.17861 -13.14304 -12.89483 -12.79608 -12.63490 -12.51757 -12.35923 -11.81538 -11.52130 -11.28073 -11.23561 -11.02717 -10.91250 -10.62500 -10.43282 -10.39531 -10.12601 -10.03768 -9.91218 -9.71613 -9.53436 -8.98838 -8.87053 -8.52292 -7.23135 -5.72834 -3.07811 0.43095 1.47791 1.56061 2.54498 2.75376 3.39363 3.42630 3.44931 3.47766 3.53767 3.89111 4.30572 4.44575 4.63151 4.74498 4.78749 5.05742 5.08916 5.18569 5.19067 5.22207 5.24546 5.34320 5.49135 5.55036 5.64565 5.65701 5.73815 5.78943 5.87736 5.91064 6.06710 6.10379 6.30017 6.32908 6.42681 6.60640 6.70160 6.80970 6.85987 6.95482 7.04708 7.15206 7.55598 8.00406 8.02695 8.45678 8.55756 9.23878 9.96660 10.15615 11.45617 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.004223 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.879663 B = 6629.037506 C = 8340.486474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.175 3.825 5 H 0.062 0.938 6 C 0.106 3.894 7 N -0.702 5.702 8 C 0.584 3.416 9 O -0.564 6.564 10 C -0.308 4.308 11 C 0.236 3.764 12 N -0.530 5.530 13 C 0.080 3.920 14 C 0.693 3.307 15 O -0.533 6.533 16 N -0.552 5.552 17 C 0.077 3.923 18 C 0.550 3.450 19 O -0.475 6.475 20 N -0.742 5.742 21 C -0.238 4.238 22 H 0.091 0.909 23 C 0.010 3.990 24 N -0.933 5.933 25 Si 0.878 3.122 26 H -0.285 1.285 27 H -0.293 1.293 28 H -0.278 1.278 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.423 0.577 39 H 0.195 0.805 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.361 0.639 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.149 5.769 18.586 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.199 4.199 4 C 0.065 3.935 5 H 0.080 0.920 6 C -0.018 4.018 7 N -0.360 5.360 8 C 0.369 3.631 9 O -0.446 6.446 10 C -0.321 4.321 11 C 0.108 3.892 12 N -0.247 5.247 13 C -0.061 4.061 14 C 0.396 3.604 15 O -0.406 6.406 16 N -0.295 5.295 17 C -0.063 4.063 18 C 0.343 3.657 19 O -0.346 6.346 20 N -0.385 5.385 21 C -0.367 4.367 22 H 0.109 0.891 23 C -0.186 4.186 24 N -0.581 5.581 25 Si 0.709 3.291 26 H -0.212 1.212 27 H -0.219 1.219 28 H -0.204 1.204 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.269 0.731 39 H 0.212 0.788 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.128 0.872 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.194 0.806 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.069 5.505 18.566 21.826 hybrid contribution 1.176 0.628 0.538 1.438 sum -8.892 6.133 19.104 21.947 Atomic orbital electron populations 1.21914 0.96481 1.01198 1.01021 1.21697 0.93836 0.96872 1.00850 1.21787 1.02146 0.95943 1.00025 1.20470 0.85104 0.97404 0.90475 0.92010 1.21898 0.97860 0.97643 0.84412 1.46430 1.48336 1.36717 1.04551 1.16960 0.81614 0.81977 0.82510 1.90760 1.34368 1.32769 1.86672 1.21682 1.10803 1.04414 0.95245 1.22905 0.88373 0.93507 0.84440 1.44503 1.40442 1.29249 1.10494 1.22198 1.04111 0.99662 0.80155 1.15729 0.80357 0.80208 0.84129 1.91015 1.51466 1.63135 1.35007 1.46210 1.43914 1.32546 1.06866 1.22023 0.92388 0.85960 1.05966 1.18542 0.79982 0.83516 0.83675 1.90813 1.60491 1.57883 1.25407 1.42769 1.00319 1.33078 1.62299 1.19033 0.89383 1.04168 1.24143 0.89099 1.24584 0.96111 0.97891 0.99983 1.69692 1.06907 1.34931 1.46580 0.86649 0.79841 0.82539 0.80106 1.21188 1.21926 1.20429 0.93410 0.93012 0.92922 0.90396 0.91920 0.93916 0.93513 0.91085 0.91444 0.73081 0.78777 0.88243 0.89591 0.89601 0.87223 0.90155 0.90169 0.80585 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.84 37.16 0.33 -1.71 16 2 C -0.11 -1.88 2.91 -90.62 -0.26 -2.14 16 3 C -0.14 -2.32 8.69 37.16 0.32 -2.00 16 4 C 0.18 3.32 2.27 -67.93 -0.15 3.17 16 5 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 6 C 0.11 1.81 4.52 -4.05 -0.02 1.80 16 7 N -0.70 -12.58 5.33 -61.50 -0.33 -12.91 16 8 C 0.58 9.51 7.75 -12.68 -0.10 9.41 16 9 O -0.56 -9.66 16.42 5.23 0.09 -9.57 16 10 C -0.31 -4.16 6.05 -102.73 -0.62 -4.78 16 11 C 0.24 2.13 9.98 -15.82 -0.16 1.97 16 12 N -0.53 -4.49 2.97 -128.52 -0.38 -4.88 16 13 C 0.08 0.34 9.94 59.84 0.59 0.93 16 14 C 0.69 8.11 8.09 -87.74 -0.71 7.40 16 15 O -0.53 -7.04 16.09 5.32 0.09 -6.95 16 16 N -0.55 -7.19 2.96 -129.65 -0.38 -7.57 16 17 C 0.08 0.89 9.96 59.84 0.60 1.49 16 18 C 0.55 8.35 7.63 -12.54 -0.10 8.25 16 19 O -0.47 -8.88 13.37 5.21 0.07 -8.81 16 20 N -0.74 -17.13 3.60 -53.43 -0.19 -17.32 16 21 C -0.24 -6.56 10.41 -15.06 -0.16 -6.71 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 23 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 24 N -0.93 -29.25 13.97 55.49 0.78 -28.47 16 25 Si 0.88 22.51 27.74 -169.99 -4.71 17.80 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.68 6.54 -51.93 -0.34 0.34 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.06 1.18 7.60 -51.93 -0.39 0.78 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.70 6.32 -51.93 -0.33 0.38 16 36 H 0.07 1.12 6.71 -51.93 -0.35 0.77 16 37 H 0.07 1.16 6.17 -51.93 -0.32 0.84 16 38 H 0.42 8.40 4.90 -40.82 -0.20 8.20 16 39 H 0.20 1.15 7.47 -52.49 -0.39 0.76 16 40 H 0.10 0.10 7.72 -51.93 -0.40 -0.30 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.11 1.38 6.92 -51.93 -0.36 1.02 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.36 8.50 5.66 -40.82 -0.23 8.27 16 47 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -35.84 381.34 -6.48 -42.32 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -6.71 Total: 13.34 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: -0.53 Total: 17.28 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -0.51 Total: -71.15 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: 0.24 Total: -25.33 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.84 -6.48 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568464531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.915 kcal (2) G-P(sol) polarization free energy of solvation -35.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds