Wall clock time and date at job start Tue Mar 31 2020 21:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47045 * 2 1 4 4 C 1.53004 * 109.47178 * 119.99357 * 2 1 3 5 5 H 1.09001 * 109.46686 * 60.00306 * 4 2 1 6 6 C 1.52994 * 109.47532 * 300.00543 * 4 2 1 7 7 N 1.46497 * 109.47343 * 184.99664 * 6 4 2 8 8 C 1.34774 * 120.00359 * 179.97438 * 7 6 4 9 9 O 1.21650 * 119.99890 * 5.09577 * 8 7 6 10 10 C 1.47073 * 120.00302 * 185.09714 * 8 7 6 11 11 C 1.38116 * 120.95412 * 174.34107 * 10 8 7 12 12 N 1.35846 * 119.31948 * 179.97438 * 11 10 8 13 13 C 1.46493 * 119.25189 * 180.02562 * 12 11 10 14 14 C 1.34227 * 121.49716 * 0.02562 * 12 11 10 15 15 O 1.21549 * 118.93904 * 179.97438 * 14 12 11 16 16 N 1.34405 * 122.12969 * 359.97438 * 14 12 11 17 17 C 1.46494 * 119.78448 * 180.27925 * 16 14 12 18 18 C 1.34976 * 120.43557 * 0.02562 * 16 14 12 19 19 O 1.21675 * 120.73587 * 179.97438 * 18 16 14 20 20 N 1.46494 * 109.47208 * 179.97438 * 4 2 1 21 21 C 1.36940 * 120.00448 * 275.00618 * 20 4 2 22 22 H 1.08001 * 119.99689 * 0.02562 * 21 20 4 23 23 C 1.38812 * 119.99873 * 179.97438 * 21 20 4 24 24 N 1.31617 * 119.99735 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00117 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47270 * 89.99932 * 25 23 21 27 27 H 1.48506 * 109.46895 * 209.99650 * 25 23 21 28 28 H 1.48501 * 109.47463 * 329.99473 * 25 23 21 29 29 H 1.09003 * 109.46700 * 60.00194 * 1 2 3 30 30 H 1.08993 * 109.46791 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46933 * 300.00298 * 1 2 3 32 32 H 1.09000 * 109.47348 * 240.00042 * 2 1 3 33 33 H 1.09004 * 109.47550 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47482 * 299.99969 * 3 2 1 35 35 H 1.08999 * 109.47498 * 60.00048 * 3 2 1 36 36 H 1.09002 * 109.47030 * 64.99335 * 6 4 2 37 37 H 1.08997 * 109.46948 * 304.99636 * 6 4 2 38 38 H 0.97007 * 119.99901 * 0.02562 * 7 6 4 39 39 H 1.07994 * 120.34503 * 0.02562 * 11 10 8 40 40 H 1.09006 * 109.47481 * 0.02562 * 13 12 11 41 41 H 1.08998 * 109.47451 * 119.99575 * 13 12 11 42 42 H 1.09000 * 109.47425 * 240.00009 * 13 12 11 43 43 H 1.09003 * 109.47594 * 179.72143 * 17 16 14 44 44 H 1.09000 * 109.46908 * 299.72552 * 17 16 14 45 45 H 1.09007 * 109.47488 * 59.72230 * 17 16 14 46 46 H 0.97001 * 119.99694 * 95.00717 * 20 4 2 47 47 H 0.97005 * 120.00233 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6767 -1.7488 1.2494 6 6 1.5300 0.0001 2.4985 7 7 2.1141 -0.6174 3.6917 8 6 1.8060 -0.1437 4.9152 9 8 0.9730 0.7347 5.0353 10 6 2.4768 -0.6885 6.1052 11 6 2.2630 -0.1403 7.3548 12 7 2.8995 -0.6703 8.4315 13 6 2.6712 -0.0880 9.7562 14 6 3.7330 -1.7153 8.3092 15 8 4.2784 -2.1521 9.3037 16 7 3.9840 -2.2944 7.1225 17 6 4.8983 -3.4366 7.0491 18 6 3.3953 -1.8336 5.9987 19 8 3.6189 -2.3534 4.9215 20 7 3.5050 -0.7217 1.2490 21 6 4.1893 -1.6934 0.5689 22 1 3.6489 -2.4593 0.0323 23 6 5.5774 -1.6935 0.5682 24 7 6.2351 -2.6278 -0.0851 25 14 6.5119 -0.3685 1.4957 26 1 6.7600 -0.8205 2.8883 27 1 7.8092 -0.1126 0.8198 28 1 5.7096 0.8809 1.5163 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 0.4437 -0.0768 2.5444 37 1 1.8183 1.0503 2.4549 38 1 2.7233 -1.3669 3.6011 39 1 1.5959 0.7004 7.4748 40 1 1.9725 0.7444 9.6718 41 1 2.2541 -0.8459 10.4193 42 1 3.6165 0.2705 10.1634 43 1 4.9753 -3.7746 6.0157 44 1 5.8831 -3.1374 7.4079 45 1 4.5168 -4.2479 7.6692 46 1 3.9903 -0.0336 1.7307 47 1 7.2051 -2.6282 -0.0853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568464531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:07 Heat of formation + Delta-G solvation = -77.519707 kcal Electronic energy + Delta-G solvation = -30855.475622 eV Core-core repulsion = 26652.922992 eV Total energy + Delta-G solvation = -4202.552630 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.52230 -40.95770 -40.09778 -38.99504 -38.32578 -36.64624 -35.16780 -34.92626 -33.03218 -32.68966 -29.62538 -29.18513 -27.96227 -27.89761 -26.10308 -24.91487 -24.70171 -23.83565 -21.93130 -20.46882 -20.26986 -19.93704 -18.93480 -18.54996 -18.45091 -17.27158 -17.08638 -16.86987 -16.79908 -16.20611 -16.08390 -15.94949 -15.61946 -15.39578 -15.08330 -14.95631 -14.77601 -14.74813 -14.25244 -14.13054 -13.95206 -13.90516 -13.49685 -13.32597 -13.02345 -12.83700 -12.68625 -12.61735 -12.43876 -12.24434 -12.24093 -12.05834 -11.82695 -11.62455 -11.60647 -11.19815 -11.11926 -11.06764 -10.90482 -10.06220 -9.68725 -9.27515 -7.99913 -5.30753 -0.44188 0.53288 0.66096 1.31933 1.35675 1.40784 1.60712 1.68505 2.32068 2.43364 2.47479 3.00339 3.32623 3.54479 3.61759 3.77787 3.88847 4.02279 4.14321 4.21058 4.25800 4.29392 4.30099 4.36863 4.45567 4.46123 4.50729 4.66478 4.71663 4.80962 4.89600 4.90938 4.92847 5.04338 5.12084 5.17454 5.21302 5.33875 5.50353 5.60136 5.68728 5.81836 5.87326 6.16366 6.23685 6.52981 6.72391 7.09821 7.25484 7.85469 8.03824 9.22108 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.004223 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.879663 B = 6629.037506 C = 8340.486474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.137 4.137 4 C 0.172 3.828 5 H 0.046 0.954 6 C 0.116 3.884 7 N -0.720 5.720 8 C 0.587 3.413 9 O -0.574 6.574 10 C -0.354 4.354 11 C 0.292 3.708 12 N -0.516 5.516 13 C 0.068 3.932 14 C 0.689 3.311 15 O -0.546 6.546 16 N -0.555 5.555 17 C 0.074 3.926 18 C 0.546 3.454 19 O -0.526 6.526 20 N -0.741 5.741 21 C -0.213 4.213 22 H 0.060 0.940 23 C -0.055 4.055 24 N -0.982 5.982 25 Si 0.941 3.059 26 H -0.289 1.289 27 H -0.296 1.296 28 H -0.256 1.256 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.033 0.967 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.413 0.587 39 H 0.240 0.760 40 H 0.143 0.857 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.361 0.639 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 8.800 21.577 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.194 4.194 4 C 0.064 3.936 5 H 0.064 0.936 6 C -0.009 4.009 7 N -0.378 5.378 8 C 0.375 3.625 9 O -0.458 6.458 10 C -0.367 4.367 11 C 0.161 3.839 12 N -0.231 5.231 13 C -0.071 4.071 14 C 0.392 3.608 15 O -0.420 6.420 16 N -0.298 5.298 17 C -0.066 4.066 18 C 0.342 3.658 19 O -0.402 6.402 20 N -0.384 5.384 21 C -0.344 4.344 22 H 0.078 0.922 23 C -0.247 4.247 24 N -0.634 5.634 25 Si 0.770 3.230 26 H -0.216 1.216 27 H -0.223 1.223 28 H -0.180 1.180 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.257 0.743 39 H 0.256 0.744 40 H 0.161 0.839 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.194 0.806 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.200 8.584 21.636 26.280 hybrid contribution 1.712 -0.360 -0.219 1.763 sum -10.488 8.223 21.416 25.225 Atomic orbital electron populations 1.21838 0.93382 1.01913 1.02638 1.21564 0.96390 0.96791 0.98067 1.21745 1.00250 0.95557 1.01888 1.20656 0.82640 0.97400 0.92894 0.93620 1.21795 0.98656 0.97179 0.83220 1.46565 1.48775 1.36913 1.05504 1.17180 0.81245 0.81512 0.82590 1.90735 1.34888 1.33263 1.86884 1.21310 1.13267 1.05971 0.96139 1.23429 0.85698 0.92052 0.82676 1.44842 1.38463 1.27698 1.12079 1.22689 1.05592 1.01071 0.77735 1.15912 0.80749 0.80825 0.83314 1.91014 1.52128 1.63735 1.35170 1.46303 1.43697 1.32743 1.07054 1.22071 0.92899 0.86389 1.05254 1.18874 0.79916 0.83686 0.83354 1.90781 1.62538 1.59711 1.27154 1.42696 1.02082 1.31925 1.61680 1.18965 0.89412 1.03669 1.22341 0.92231 1.25253 0.97168 1.00418 1.01823 1.69856 1.06884 1.37419 1.49223 0.85610 0.78384 0.80796 0.78199 1.21588 1.22311 1.18050 0.91638 0.92848 0.91395 0.93315 0.94780 0.91913 0.91785 0.89294 0.91091 0.74281 0.74408 0.83855 0.88974 0.89251 0.89043 0.89351 0.88493 0.80563 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.84 71.98 0.64 -2.91 16 2 C -0.11 -3.56 2.91 -10.79 -0.03 -3.59 16 3 C -0.14 -4.26 8.69 71.98 0.63 -3.64 16 4 C 0.17 6.59 2.27 44.99 0.10 6.69 16 5 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 6 C 0.12 3.82 4.52 86.38 0.39 4.21 16 7 N -0.72 -25.64 5.33 -466.73 -2.49 -28.12 16 8 C 0.59 18.24 7.75 86.56 0.67 18.92 16 9 O -0.57 -18.06 16.42 -4.19 -0.07 -18.13 16 10 C -0.35 -8.96 6.05 -18.64 -0.11 -9.07 16 11 C 0.29 4.08 9.98 84.04 0.84 4.92 16 12 N -0.52 -6.78 2.97 -679.12 -2.02 -8.80 16 13 C 0.07 0.24 9.94 127.77 1.27 1.51 16 14 C 0.69 14.70 8.09 179.34 1.45 16.15 16 15 O -0.55 -13.30 16.09 -3.87 -0.06 -13.36 16 16 N -0.56 -14.24 2.96 -800.69 -2.37 -16.61 16 17 C 0.07 1.75 9.96 127.77 1.27 3.02 16 18 C 0.55 16.70 7.63 86.56 0.66 17.36 16 19 O -0.53 -20.71 13.37 -4.27 -0.06 -20.77 16 20 N -0.74 -34.93 3.60 -322.95 -1.16 -36.10 16 21 C -0.21 -12.25 10.41 84.03 0.87 -11.37 16 22 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 23 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 24 N -0.98 -64.31 13.97 21.65 0.30 -64.01 16 25 Si 0.94 47.84 27.74 68.60 1.90 49.74 16 26 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 27 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 28 H -0.26 -11.88 6.52 99.48 0.65 -11.23 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.53 6.54 -2.39 -0.02 1.52 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.03 1.24 7.60 -2.38 -0.02 1.22 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.76 6.32 -2.39 -0.02 1.75 16 36 H 0.09 2.61 6.71 -2.39 -0.02 2.60 16 37 H 0.07 2.30 6.17 -2.39 -0.01 2.28 16 38 H 0.41 16.88 4.90 -92.70 -0.45 16.43 16 39 H 0.24 1.29 7.47 -2.91 -0.02 1.27 16 40 H 0.14 -0.67 7.72 -2.38 -0.02 -0.69 16 41 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.09 2.50 6.92 -2.39 -0.02 2.48 16 44 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.36 17.04 5.66 -92.71 -0.52 16.51 16 47 H 0.25 16.00 8.31 -92.70 -0.77 15.23 16 Total: -1.00 -82.74 381.34 3.07 -79.67 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -0.02 Total: 37.16 kcal Atomic # 6 Polarization: 30.20 SS G_CDS: 9.12 Total: 39.32 kcal Atomic # 7 Polarization: -145.89 SS G_CDS: -7.74 Total: -153.63 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -0.19 Total: -52.26 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 1.90 Total: 49.74 kcal Total: -82.74 3.07 -79.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568464531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.149 kcal (2) G-P(sol) polarization free energy of solvation -82.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds