Wall clock time and date at job start Tue Mar 31 2020 20:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47035 * 2 1 4 4 N 1.29934 * 125.38137 * 89.99624 * 3 2 1 5 5 C 1.36065 * 108.48237 * 179.97438 * 4 3 2 6 6 C 1.47417 * 126.45061 * 179.97438 * 5 4 3 7 7 O 1.21613 * 119.99925 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00113 * 0.03186 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27547 * 8 6 5 10 10 H 1.09004 * 109.47372 * 34.71852 * 9 8 6 11 11 C 1.52997 * 109.47036 * 274.72131 * 9 8 6 12 12 C 1.52999 * 109.46963 * 154.72290 * 9 8 6 13 13 N 1.46897 * 109.47028 * 304.99535 * 12 9 8 14 14 C 1.46897 * 111.00124 * 293.95394 * 13 12 9 15 15 C 1.46904 * 111.00074 * 170.00155 * 13 12 9 16 16 C 1.50694 * 109.47463 * 190.00253 * 15 13 12 17 17 O 1.21294 * 119.99813 * 359.97438 * 16 15 13 18 18 N 1.34775 * 120.00053 * 180.02562 * 16 15 13 19 19 C 1.37095 * 119.99771 * 179.97438 * 18 16 15 20 20 H 1.08006 * 120.00171 * 0.02562 * 19 18 16 21 21 C 1.38952 * 120.00063 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99902 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00406 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46852 * 59.99872 * 23 21 19 25 25 H 1.48489 * 109.47477 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46891 * 300.00632 * 23 21 19 27 27 C 1.36095 * 107.09723 * 0.26557 * 5 4 3 28 28 O 1.34049 * 125.37846 * 269.96301 * 3 2 1 29 29 H 1.08995 * 109.47277 * 60.00166 * 1 2 3 30 30 H 1.09004 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47205 * 300.00098 * 1 2 3 32 32 H 1.08995 * 109.47441 * 239.99835 * 2 1 3 33 33 H 1.09008 * 109.46949 * 119.99694 * 2 1 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 35 35 H 1.09009 * 109.47238 * 300.00198 * 11 9 8 36 36 H 1.08997 * 109.47293 * 60.00168 * 11 9 8 37 37 H 1.09003 * 109.47189 * 180.02562 * 11 9 8 38 38 H 1.08995 * 109.47415 * 64.99597 * 12 9 8 39 39 H 1.09008 * 109.47087 * 184.99936 * 12 9 8 40 40 H 1.08997 * 109.47210 * 60.00178 * 14 13 12 41 41 H 1.09004 * 109.47290 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.47407 * 299.99706 * 14 13 12 43 43 H 1.09006 * 109.46985 * 310.00282 * 15 13 12 44 44 H 1.09003 * 109.47186 * 69.99791 * 15 13 12 45 45 H 0.96994 * 120.00278 * 359.97438 * 18 16 15 46 46 H 0.96998 * 120.00277 * 179.97438 * 22 21 19 47 47 H 1.07997 * 126.52351 * 179.73430 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2830 2.1302 1.0594 5 6 2.7175 3.3574 0.6639 6 6 3.1114 4.4726 1.5438 7 8 3.4837 5.5252 1.0618 8 7 3.0590 4.3256 2.8825 9 6 3.4447 5.4359 3.7570 10 1 3.1538 6.3797 3.2956 11 6 4.9600 5.4168 3.9673 12 6 2.7404 5.2899 5.1074 13 7 1.2905 5.1881 4.8949 14 6 0.7487 6.4409 4.3519 15 6 0.6017 4.8111 6.1365 16 6 -0.8361 4.4777 5.8321 17 8 -1.2467 4.5477 4.6929 18 7 -1.6658 4.1027 6.8257 19 6 -2.9739 3.7999 6.5488 20 1 -3.3394 3.8615 5.5343 21 6 -3.8293 3.4128 7.5731 22 7 -3.3846 3.3375 8.8073 23 14 -5.6120 3.0009 7.1960 24 1 -5.6660 1.8689 6.2363 25 1 -6.3083 2.6203 8.4510 26 1 -6.2787 4.1867 6.6006 27 6 2.7138 3.3637 -0.6971 28 8 2.2917 2.1523 -1.0930 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.7618 3.4861 3.2670 35 1 5.2509 4.4729 4.4287 36 1 5.4617 5.5208 3.0053 37 1 5.2469 6.2426 4.6183 38 1 3.0982 4.3905 5.6084 39 1 2.9567 6.1610 5.7260 40 1 1.2271 6.6601 3.3974 41 1 -0.3265 6.3382 4.2047 42 1 0.9431 7.2541 5.0511 43 1 1.0916 3.9412 6.5741 44 1 0.6407 5.6424 6.8405 45 1 -1.3376 4.0471 7.7367 46 1 -3.9817 3.0676 9.5225 47 1 2.9990 4.1858 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569113120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:15 Heat of formation + Delta-G solvation = -48.196788 kcal Electronic energy + Delta-G solvation = -29529.781302 eV Core-core repulsion = 25328.500209 eV Total energy + Delta-G solvation = -4201.281093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.53773 -39.72688 -38.54618 -36.94901 -35.15572 -34.66810 -34.09193 -33.73407 -31.23736 -31.03273 -29.52703 -27.97129 -26.88418 -24.96739 -24.65329 -24.29928 -22.55889 -21.48572 -20.55103 -20.25907 -19.12130 -18.24645 -17.81202 -16.96602 -16.63441 -16.28527 -15.99810 -15.30363 -15.10013 -14.77255 -14.73224 -14.57392 -14.50679 -14.00363 -13.89796 -13.61858 -13.49323 -13.36577 -12.90755 -12.83160 -12.52941 -12.09748 -11.99716 -11.99465 -11.80609 -11.50187 -11.43841 -11.34274 -11.30008 -11.21110 -10.89862 -10.89098 -10.69077 -10.43186 -10.19697 -10.14721 -9.44765 -9.19209 -8.91495 -8.42344 -7.95635 -7.83401 -6.39940 -3.80495 1.01930 1.93470 2.42944 3.11555 3.20814 3.26299 3.30705 3.36119 3.72771 3.93097 3.98223 4.25425 4.60023 4.67251 4.78658 4.89157 4.89925 5.06436 5.10497 5.15500 5.22606 5.28205 5.44762 5.45357 5.46357 5.54381 5.55992 5.61768 5.71678 5.74065 5.75814 5.88342 5.96253 5.98382 6.01649 6.05156 6.10472 6.30694 6.53508 6.60997 7.27480 7.32775 7.38731 7.56649 7.68735 8.08343 8.24337 8.64444 9.20345 9.56920 10.09390 10.77885 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009105 B = 0.003157 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.486603 B = 8867.024085 C =11257.898248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.025 4.025 3 C 0.198 3.802 4 N -0.452 5.452 5 C -0.065 4.065 6 C 0.605 3.395 7 O -0.549 6.549 8 N -0.684 5.684 9 C 0.146 3.854 10 H 0.089 0.911 11 C -0.161 4.161 12 C 0.042 3.958 13 N -0.514 5.514 14 C 0.022 3.978 15 C 0.046 3.954 16 C 0.445 3.555 17 O -0.575 6.575 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.004 3.996 28 O -0.198 6.198 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.414 0.586 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.014 0.986 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.391 0.609 46 H 0.271 0.729 47 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.682 -3.049 -12.397 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.063 4.063 3 C -0.011 4.011 4 N -0.182 5.182 5 C -0.185 4.185 6 C 0.390 3.610 7 O -0.428 6.428 8 N -0.334 5.334 9 C 0.041 3.959 10 H 0.107 0.893 11 C -0.220 4.220 12 C -0.086 4.086 13 N -0.238 5.238 14 C -0.126 4.126 15 C -0.086 4.086 16 C 0.230 3.770 17 O -0.459 6.459 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.070 4.070 28 O -0.084 6.084 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.251 0.749 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.033 0.967 43 H 0.106 0.894 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 15.394 -2.896 -13.019 20.367 hybrid contribution -0.631 0.361 0.665 0.986 sum 14.762 -2.534 -12.354 19.415 Atomic orbital electron populations 1.21818 0.92667 1.03206 1.03510 1.20125 0.97216 0.83794 1.05212 1.26398 0.99487 0.97005 0.78234 1.70800 1.15042 1.02565 1.29775 1.21809 1.09275 0.94419 0.92967 1.16686 0.77263 0.84927 0.82101 1.90790 1.49131 1.27296 1.75609 1.45596 1.65473 1.17616 1.04696 1.21011 0.93677 0.91149 0.90054 0.89276 1.22154 0.95176 1.02255 1.02432 1.22499 0.89046 1.01694 0.95401 1.61552 1.01188 1.33577 1.27496 1.22555 1.03711 0.88087 0.98252 1.21874 0.95299 1.00620 0.90774 1.19728 0.86726 0.84382 0.86157 1.90497 1.77056 1.57354 1.20999 1.41850 1.09900 1.59478 1.08970 1.19637 0.84996 1.42129 0.95990 0.88046 1.25238 1.00409 0.97505 0.94740 1.69601 1.36976 1.48199 0.99689 0.85938 0.81829 0.79097 0.77473 1.19906 1.20996 1.19967 1.25223 0.99411 0.86593 0.95740 1.84373 1.63599 1.22415 1.38051 0.92174 0.90757 0.91080 0.88897 0.87365 0.74931 0.92234 0.91878 0.91513 0.90177 0.93402 0.92194 0.88644 0.96732 0.89431 0.93491 0.77546 0.91869 0.75505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.92 16 2 C -0.03 -0.20 6.56 -27.88 -0.18 -0.38 16 3 C 0.20 2.30 7.56 -13.08 -0.10 2.21 16 4 N -0.45 -6.38 11.06 -7.66 -0.08 -6.47 16 5 C -0.06 -0.91 6.99 -83.02 -0.58 -1.49 16 6 C 0.60 9.18 7.78 -12.52 -0.10 9.08 16 7 O -0.55 -9.24 16.55 5.27 0.09 -9.15 16 8 N -0.68 -9.54 4.80 -54.88 -0.26 -9.80 16 9 C 0.15 1.81 2.35 -67.93 -0.16 1.65 16 10 H 0.09 1.24 6.23 -51.93 -0.32 0.92 16 11 C -0.16 -1.61 9.49 37.16 0.35 -1.26 16 12 C 0.04 0.52 4.52 -3.83 -0.02 0.51 16 13 N -0.51 -8.47 4.22 -244.37 -1.03 -9.50 16 14 C 0.02 0.37 8.96 60.06 0.54 0.91 16 15 C 0.05 0.80 5.45 -4.98 -0.03 0.78 16 16 C 0.44 10.46 7.47 -10.99 -0.08 10.38 16 17 O -0.58 -15.52 13.91 5.55 0.08 -15.44 16 18 N -0.57 -14.28 5.29 -10.96 -0.06 -14.34 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 23 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.00 0.05 11.95 29.96 0.36 0.41 16 28 O -0.20 -2.24 10.73 6.52 0.07 -2.17 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.11 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.41 5.91 8.33 -40.82 -0.34 5.57 16 35 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 39 H 0.05 0.53 8.12 -51.92 -0.42 0.11 16 40 H 0.06 0.98 6.58 -51.93 -0.34 0.64 16 41 H 0.10 1.98 5.82 -51.93 -0.30 1.68 16 42 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.09 1.38 7.93 -51.93 -0.41 0.96 16 44 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 45 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.23 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -33.96 398.39 -6.41 -40.36 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -7.04 Total: 14.35 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 0.13 Total: 13.92 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: -0.71 Total: -63.93 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: 0.23 Total: -26.77 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.96 -6.41 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569113120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.835 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds