Wall clock time and date at job start Tue Mar 31 2020 20:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47035 * 2 1 4 4 N 1.29934 * 125.38137 * 89.99624 * 3 2 1 5 5 C 1.36065 * 108.48237 * 179.97438 * 4 3 2 6 6 C 1.47417 * 126.45061 * 179.97438 * 5 4 3 7 7 O 1.21613 * 119.99925 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00113 * 0.03186 * 6 5 4 9 9 C 1.46498 * 119.99828 * 180.27547 * 8 6 5 10 10 H 1.09004 * 109.47372 * 34.71852 * 9 8 6 11 11 C 1.52997 * 109.47036 * 274.72131 * 9 8 6 12 12 C 1.52999 * 109.46963 * 154.72290 * 9 8 6 13 13 N 1.46897 * 109.47028 * 304.99535 * 12 9 8 14 14 C 1.46897 * 111.00124 * 293.95394 * 13 12 9 15 15 C 1.46904 * 111.00074 * 170.00155 * 13 12 9 16 16 C 1.50694 * 109.47463 * 190.00253 * 15 13 12 17 17 O 1.21294 * 119.99813 * 359.97438 * 16 15 13 18 18 N 1.34775 * 120.00053 * 180.02562 * 16 15 13 19 19 C 1.37095 * 119.99771 * 179.97438 * 18 16 15 20 20 H 1.08006 * 120.00171 * 0.02562 * 19 18 16 21 21 C 1.38952 * 120.00063 * 179.97438 * 19 18 16 22 22 N 1.31410 * 119.99902 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00406 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46852 * 59.99872 * 23 21 19 25 25 H 1.48489 * 109.47477 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46891 * 300.00632 * 23 21 19 27 27 C 1.36095 * 107.09723 * 0.26557 * 5 4 3 28 28 O 1.34049 * 125.37846 * 269.96301 * 3 2 1 29 29 H 1.08995 * 109.47277 * 60.00166 * 1 2 3 30 30 H 1.09004 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47205 * 300.00098 * 1 2 3 32 32 H 1.08995 * 109.47441 * 239.99835 * 2 1 3 33 33 H 1.09008 * 109.46949 * 119.99694 * 2 1 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 35 35 H 1.09009 * 109.47238 * 300.00198 * 11 9 8 36 36 H 1.08997 * 109.47293 * 60.00168 * 11 9 8 37 37 H 1.09003 * 109.47189 * 180.02562 * 11 9 8 38 38 H 1.08995 * 109.47415 * 64.99597 * 12 9 8 39 39 H 1.09008 * 109.47087 * 184.99936 * 12 9 8 40 40 H 1.08997 * 109.47210 * 60.00178 * 14 13 12 41 41 H 1.09004 * 109.47290 * 180.02562 * 14 13 12 42 42 H 1.09003 * 109.47407 * 299.99706 * 14 13 12 43 43 H 1.09006 * 109.46985 * 310.00282 * 15 13 12 44 44 H 1.09003 * 109.47186 * 69.99791 * 15 13 12 45 45 H 0.96994 * 120.00278 * 359.97438 * 18 16 15 46 46 H 0.96998 * 120.00277 * 179.97438 * 22 21 19 47 47 H 1.07997 * 126.52351 * 179.73430 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2830 2.1302 1.0594 5 6 2.7175 3.3574 0.6639 6 6 3.1114 4.4726 1.5438 7 8 3.4837 5.5252 1.0618 8 7 3.0590 4.3256 2.8825 9 6 3.4447 5.4359 3.7570 10 1 3.1538 6.3797 3.2956 11 6 4.9600 5.4168 3.9673 12 6 2.7404 5.2899 5.1074 13 7 1.2905 5.1881 4.8949 14 6 0.7487 6.4409 4.3519 15 6 0.6017 4.8111 6.1365 16 6 -0.8361 4.4777 5.8321 17 8 -1.2467 4.5477 4.6929 18 7 -1.6658 4.1027 6.8257 19 6 -2.9739 3.7999 6.5488 20 1 -3.3394 3.8615 5.5343 21 6 -3.8293 3.4128 7.5731 22 7 -3.3846 3.3375 8.8073 23 14 -5.6120 3.0009 7.1960 24 1 -5.6660 1.8689 6.2363 25 1 -6.3083 2.6203 8.4510 26 1 -6.2787 4.1867 6.6006 27 6 2.7138 3.3637 -0.6971 28 8 2.2917 2.1523 -1.0930 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.7618 3.4861 3.2670 35 1 5.2509 4.4729 4.4287 36 1 5.4617 5.5208 3.0053 37 1 5.2469 6.2426 4.6183 38 1 3.0982 4.3905 5.6084 39 1 2.9567 6.1610 5.7260 40 1 1.2271 6.6601 3.3974 41 1 -0.3265 6.3382 4.2047 42 1 0.9431 7.2541 5.0511 43 1 1.0916 3.9412 6.5741 44 1 0.6407 5.6424 6.8405 45 1 -1.3376 4.0471 7.7367 46 1 -3.9817 3.0676 9.5225 47 1 2.9990 4.1858 -1.3368 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569113120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:14 Heat of formation + Delta-G solvation = -76.522077 kcal Electronic energy + Delta-G solvation = -29531.009579 eV Core-core repulsion = 25328.500209 eV Total energy + Delta-G solvation = -4202.509370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.46557 -40.88731 -40.23499 -38.32964 -36.16369 -36.04869 -35.51666 -34.86094 -33.25817 -32.08315 -30.42925 -29.49311 -28.02168 -26.67538 -25.71651 -25.18469 -23.85425 -22.44942 -21.51220 -21.34104 -20.95157 -19.83560 -19.25051 -17.91078 -17.84494 -17.54443 -17.21217 -16.66536 -16.55581 -16.24014 -15.91275 -15.71021 -15.58591 -15.47555 -15.10756 -15.07420 -14.75596 -14.49036 -14.11559 -13.65350 -13.59796 -13.55690 -13.36303 -13.12568 -12.88855 -12.81425 -12.67643 -12.65842 -12.45692 -12.40345 -12.33094 -12.12471 -12.06907 -11.88855 -11.73528 -11.44235 -11.29081 -10.28541 -10.19567 -9.97900 -9.92074 -9.20072 -8.44974 -5.93159 0.06330 0.95407 1.39633 1.41226 1.51948 1.56835 2.08531 2.08971 2.27921 2.29136 2.73691 2.88301 3.22111 3.43365 3.69470 3.76991 3.79684 4.13500 4.19757 4.21034 4.23583 4.32892 4.36924 4.40813 4.52517 4.53382 4.56717 4.57683 4.65851 4.69350 4.76376 4.80072 4.94482 4.98497 5.03133 5.07772 5.15458 5.27954 5.32913 5.41943 5.49071 5.87909 6.06401 6.18724 6.33476 6.61819 6.63561 7.12131 7.15523 7.59534 8.16471 8.72289 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009105 B = 0.003157 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.486603 B = 8867.024085 C =11257.898248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.024 4.024 3 C 0.199 3.801 4 N -0.484 5.484 5 C -0.100 4.100 6 C 0.599 3.401 7 O -0.574 6.574 8 N -0.683 5.683 9 C 0.145 3.855 10 H 0.071 0.929 11 C -0.151 4.151 12 C 0.047 3.953 13 N -0.533 5.533 14 C 0.032 3.968 15 C 0.059 3.941 16 C 0.441 3.559 17 O -0.615 6.615 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.921 5.921 23 Si 0.989 3.011 24 H -0.272 1.272 25 H -0.269 1.269 26 H -0.274 1.274 27 C 0.020 3.980 28 O -0.195 6.195 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.037 0.963 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.412 0.588 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.035 0.965 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.747 -3.854 -12.056 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.061 4.061 3 C -0.011 4.011 4 N -0.214 5.214 5 C -0.219 4.219 6 C 0.386 3.614 7 O -0.456 6.456 8 N -0.331 5.331 9 C 0.040 3.960 10 H 0.089 0.911 11 C -0.210 4.210 12 C -0.080 4.080 13 N -0.257 5.257 14 C -0.116 4.116 15 C -0.072 4.072 16 C 0.228 3.772 17 O -0.501 6.501 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.094 0.906 21 C -0.211 4.211 22 N -0.562 5.562 23 Si 0.813 3.187 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.199 1.199 27 C -0.055 4.055 28 O -0.081 6.081 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.057 0.943 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.248 0.752 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.132 0.868 44 H 0.088 0.912 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 16.487 -3.700 -12.639 21.101 hybrid contribution -0.937 0.607 0.504 1.225 sum 15.550 -3.093 -12.134 19.965 Atomic orbital electron populations 1.21796 0.93109 1.04234 1.01784 1.20377 0.96604 0.81884 1.07256 1.27182 0.98213 0.97941 0.77761 1.70758 1.16416 1.03026 1.31161 1.21879 1.11445 0.94651 0.93975 1.16899 0.76979 0.84964 0.82589 1.90757 1.50550 1.28228 1.76034 1.45682 1.64979 1.17834 1.04625 1.21125 0.95377 0.89831 0.89642 0.91082 1.22068 0.92815 1.03838 1.02271 1.22585 0.85967 1.03753 0.95738 1.61456 1.03493 1.33485 1.27284 1.22328 1.00949 0.89246 0.99066 1.21747 0.91235 1.02511 0.91706 1.20827 0.88875 0.82335 0.85120 1.90481 1.78485 1.58452 1.22706 1.41907 1.09521 1.60217 1.09563 1.19581 0.86831 1.44386 0.95349 0.90628 1.25975 1.03974 0.96717 0.94418 1.69658 1.38309 1.48029 1.00165 0.85043 0.77125 0.78711 0.77794 1.19734 1.19386 1.19923 1.25752 0.97418 0.86997 0.95293 1.84406 1.63427 1.22320 1.37917 0.92294 0.88356 0.94337 0.85610 0.86500 0.75209 0.91007 0.93269 0.89348 0.88176 0.91007 0.92155 0.92918 0.94698 0.86780 0.91244 0.77026 0.91333 0.72812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.89 71.98 0.71 -1.71 16 2 C -0.02 -0.34 6.56 29.85 0.20 -0.14 16 3 C 0.20 4.52 7.56 88.39 0.67 5.19 16 4 N -0.48 -13.85 11.06 -293.04 -3.24 -17.08 16 5 C -0.10 -2.89 6.99 40.41 0.28 -2.60 16 6 C 0.60 18.56 7.78 86.66 0.67 19.24 16 7 O -0.57 -19.69 16.55 -4.07 -0.07 -19.76 16 8 N -0.68 -19.02 4.80 -445.81 -2.14 -21.16 16 9 C 0.14 3.42 2.35 44.99 0.11 3.52 16 10 H 0.07 1.95 6.23 -2.39 -0.01 1.94 16 11 C -0.15 -2.72 9.49 71.98 0.68 -2.03 16 12 C 0.05 1.05 4.52 86.30 0.39 1.44 16 13 N -0.53 -16.98 4.22 -927.04 -3.92 -20.89 16 14 C 0.03 1.10 8.96 127.69 1.14 2.25 16 15 C 0.06 1.99 5.45 85.55 0.47 2.46 16 16 C 0.44 21.04 7.47 87.66 0.66 21.69 16 17 O -0.62 -34.48 13.91 -3.07 -0.04 -34.53 16 18 N -0.57 -29.49 5.29 -306.99 -1.62 -31.11 16 19 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 20 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 21 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 22 N -0.92 -49.67 13.05 21.66 0.28 -49.39 16 23 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 27 C 0.02 0.44 11.95 67.32 0.80 1.25 16 28 O -0.19 -4.23 10.73 0.41 0.00 -4.23 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.41 11.80 8.33 -92.71 -0.77 11.03 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 1.87 7.93 -2.39 -0.02 1.85 16 39 H 0.07 1.32 8.12 -2.38 -0.02 1.30 16 40 H 0.06 2.02 6.58 -2.39 -0.02 2.00 16 41 H 0.05 2.26 5.82 -2.38 -0.01 2.25 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.11 3.28 7.93 -2.38 -0.02 3.26 16 44 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 45 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 46 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 47 H 0.26 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -76.50 398.39 -1.14 -77.64 By element: Atomic # 1 Polarization: 43.55 SS G_CDS: -0.49 Total: 43.06 kcal Atomic # 6 Polarization: 24.19 SS G_CDS: 8.06 Total: 32.25 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -10.63 Total: -139.64 kcal Atomic # 8 Polarization: -58.41 SS G_CDS: -0.11 Total: -58.51 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -76.50 -1.14 -77.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569113120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.120 kcal (2) G-P(sol) polarization free energy of solvation -76.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds