Wall clock time and date at job start Tue Mar 31 2020 21:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99978 * 2 1 4 4 C 1.52997 * 109.47058 * 269.99962 * 3 2 1 5 5 C 1.53008 * 109.46990 * 299.99860 * 4 3 2 6 6 C 1.53001 * 109.47227 * 59.99584 * 4 3 2 7 7 C 1.52996 * 109.47050 * 180.02562 * 4 3 2 8 8 N 1.46903 * 109.46878 * 180.02562 * 7 4 3 9 9 C 1.46904 * 110.99643 * 179.97438 * 8 7 4 10 10 C 1.50705 * 109.47005 * 179.97438 * 9 8 7 11 11 O 1.21294 * 119.99883 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99971 * 180.02562 * 10 9 8 13 13 C 1.37101 * 119.99681 * 179.97438 * 12 10 9 14 14 H 1.07996 * 120.00031 * 359.97438 * 13 12 10 15 15 C 1.38956 * 119.99454 * 179.97438 * 13 12 10 16 16 N 1.31403 * 120.00347 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99364 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47369 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47082 * 120.00205 * 17 15 13 20 20 H 1.48502 * 109.46905 * 239.99813 * 17 15 13 21 21 C 1.34775 * 120.00495 * 179.97438 * 2 1 3 22 22 O 1.21496 * 120.00464 * 174.53645 * 21 2 1 23 23 C 1.48331 * 119.99633 * 354.80748 * 21 2 1 24 24 C 1.42274 * 126.94174 * 173.77034 * 23 21 2 25 25 C 1.35313 * 103.92691 * 179.85474 * 24 23 21 26 26 O 1.34020 * 106.66481 * 0.40704 * 25 24 23 27 27 N 1.20902 * 111.84674 * 359.71861 * 26 25 24 28 28 H 1.09004 * 109.47111 * 265.19610 * 1 2 3 29 29 H 1.08996 * 109.47218 * 25.19569 * 1 2 3 30 30 H 1.08999 * 109.46778 * 145.19959 * 1 2 3 31 31 H 1.08998 * 109.46937 * 30.00006 * 3 2 1 32 32 H 1.09004 * 109.47074 * 149.99538 * 3 2 1 33 33 H 1.08995 * 109.46792 * 60.00254 * 5 4 3 34 34 H 1.08998 * 109.46693 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.47198 * 299.99982 * 5 4 3 36 36 H 1.09006 * 109.46633 * 60.00266 * 6 4 3 37 37 H 1.09001 * 109.46848 * 179.97438 * 6 4 3 38 38 H 1.08990 * 109.47347 * 300.00084 * 6 4 3 39 39 H 1.09004 * 109.47246 * 299.99411 * 7 4 3 40 40 H 1.08997 * 109.47360 * 59.99882 * 7 4 3 41 41 H 1.00899 * 111.00280 * 56.04674 * 8 7 4 42 42 H 1.09005 * 109.47106 * 299.99682 * 9 8 7 43 43 H 1.08993 * 109.47245 * 59.99917 * 9 8 7 44 44 H 0.96994 * 120.00049 * 359.97438 * 12 10 9 45 45 H 0.96998 * 120.00198 * 180.02562 * 16 15 13 46 46 H 1.08006 * 128.03206 * 359.97438 * 24 23 21 47 47 H 1.08000 * 126.66892 * 180.12782 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2794 0.6441 -2.1637 6 6 1.1156 1.8933 -2.1638 7 6 3.2180 3.0351 -1.4425 8 7 3.4623 3.4594 -2.8275 9 6 4.1965 4.7312 -2.8667 10 6 4.4286 5.1333 -4.3004 11 8 4.0228 4.4293 -5.2010 12 7 5.0881 6.2745 -4.5820 13 6 5.2997 6.6399 -5.8863 14 1 4.9383 6.0131 -6.6881 15 6 5.9791 7.8168 -6.1765 16 7 6.4192 8.5791 -5.2009 17 14 6.2668 8.3150 -7.9537 18 1 5.6776 7.2932 -8.8559 19 1 5.6260 9.6301 -8.2090 20 1 7.7261 8.4176 -8.2089 21 6 2.1389 -1.1671 0.0005 22 8 3.3497 -1.1696 -0.0997 23 6 1.4019 -2.4490 0.1174 24 6 1.9443 -3.7600 0.0109 25 6 0.8760 -4.5703 0.1932 26 8 -0.1847 -3.7721 0.3778 27 7 0.1191 -2.6027 0.3337 28 1 -0.3633 -0.0861 1.0241 29 1 -0.3633 0.9298 -0.4375 30 1 -0.3633 -0.8439 -0.5865 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 2.7344 -0.2998 -2.1637 34 1 3.4614 0.9590 -3.1912 35 1 4.2318 0.5138 -1.6499 36 1 0.5265 2.6530 -1.6499 37 1 1.2973 2.2083 -3.1913 38 1 0.5707 0.9494 -2.1638 39 1 2.6292 3.7950 -0.9286 40 1 4.1704 2.9044 -0.9288 41 1 2.5976 3.5254 -3.3434 42 1 3.6143 5.5025 -2.3623 43 1 5.1558 4.6125 -2.3631 44 1 5.4129 6.8372 -3.8618 45 1 6.8932 9.4008 -5.4035 46 1 2.9707 -4.0427 -0.1709 47 1 0.8769 -5.6502 0.1862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570669584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:20 Heat of formation + Delta-G solvation = 7.255027 kcal Electronic energy + Delta-G solvation = -29214.151349 eV Core-core repulsion = 25015.274827 eV Total energy + Delta-G solvation = -4198.876522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.51087 -40.51349 -38.43441 -37.59852 -35.65097 -34.47008 -33.92979 -33.06031 -32.12863 -31.17008 -28.32166 -27.45590 -27.23784 -26.53837 -25.14313 -24.15466 -23.37208 -22.87575 -20.37522 -19.35169 -18.75185 -18.27643 -18.19080 -17.85541 -17.28460 -16.59472 -16.13773 -15.87039 -15.50312 -14.86372 -14.61225 -14.39623 -14.19287 -13.98628 -13.82755 -13.78758 -13.48332 -13.42892 -13.29390 -12.95259 -12.76511 -12.42805 -11.98890 -11.81883 -11.68776 -11.53833 -11.49175 -11.41457 -11.06808 -11.01974 -10.86488 -10.70261 -10.64532 -10.34704 -10.32538 -10.20800 -10.19791 -9.49448 -8.94613 -8.40671 -7.98392 -7.91943 -6.39364 -3.79956 0.72160 1.28089 2.41509 2.72848 2.82234 3.18039 3.28333 3.35880 3.49793 3.94543 4.08164 4.14471 4.38307 4.56016 4.64147 4.76742 4.81315 4.87534 4.92806 4.94750 5.15764 5.18904 5.24916 5.29408 5.37853 5.41401 5.50458 5.55055 5.62886 5.73830 5.82801 5.87795 5.98905 6.03290 6.09761 6.17941 6.27124 6.31147 6.42292 6.68867 6.91698 7.28803 7.50916 7.57746 7.73361 7.76933 8.09565 8.64340 9.20679 9.57524 10.09173 10.78546 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.032713 B = 0.001783 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.718149 B =15703.919812 C =15859.233025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.595 5.595 3 C 0.126 3.874 4 C -0.076 4.076 5 C -0.121 4.121 6 C -0.149 4.149 7 C 0.072 3.928 8 N -0.664 5.664 9 C 0.050 3.950 10 C 0.442 3.558 11 O -0.583 6.583 12 N -0.565 5.565 13 C -0.298 4.298 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.902 5.902 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.593 3.407 22 O -0.510 6.510 23 C -0.024 4.024 24 C -0.185 4.185 25 C -0.058 4.058 26 O 0.115 5.885 27 N -0.329 5.329 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.026 0.974 40 H 0.073 0.927 41 H 0.348 0.652 42 H 0.042 0.958 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.270 0.730 46 H 0.181 0.819 47 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.563 -22.092 16.633 30.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.327 5.327 3 C 0.004 3.996 4 C -0.078 4.078 5 C -0.178 4.178 6 C -0.206 4.206 7 C -0.058 4.058 8 N -0.298 5.298 9 C -0.082 4.082 10 C 0.227 3.773 11 O -0.467 6.467 12 N -0.202 5.202 13 C -0.428 4.428 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.757 3.243 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.379 3.621 22 O -0.384 6.384 23 C -0.183 4.183 24 C -0.207 4.207 25 C -0.139 4.139 26 O 0.041 5.959 27 N -0.032 5.032 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.169 0.831 42 H 0.060 0.940 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.199 0.801 47 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -13.494 -21.836 16.052 30.275 hybrid contribution 0.429 0.902 -0.224 1.024 sum -13.066 -20.934 15.828 29.317 Atomic orbital electron populations 1.22121 0.78562 1.03725 1.02432 1.47578 1.07500 1.05551 1.72089 1.21650 0.97588 0.83417 0.96967 1.20955 0.96048 0.96181 0.94583 1.21702 0.99048 0.95778 1.01319 1.22019 0.96056 1.01202 1.01335 1.21899 0.99247 0.94189 0.90512 1.60077 1.27420 1.30640 1.11635 1.21672 0.99420 0.90418 0.96716 1.19835 0.84277 0.83366 0.89792 1.90520 1.55023 1.53559 1.47605 1.41872 1.49653 1.19897 1.08765 1.19757 1.33476 1.05500 0.84027 0.87889 1.25261 0.96951 0.96089 0.99730 1.69618 1.38649 1.14263 1.31841 0.85800 0.77982 0.78436 0.82125 1.19236 1.20805 1.20759 1.16897 0.86288 0.81485 0.77452 1.90842 1.12654 1.86160 1.48726 1.23645 0.90563 0.96993 1.07141 1.22812 1.02423 0.89983 1.05493 1.26057 0.85206 0.99595 1.03013 1.84810 1.34867 1.11493 1.64727 1.74368 1.15490 0.97298 1.16023 0.92273 0.90179 0.90219 0.90134 0.89410 0.94332 0.91309 0.92311 0.93024 0.91442 0.92546 0.95590 0.90850 0.83125 0.94019 0.89615 0.77474 0.91964 0.80132 0.75942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 8.11 59.84 0.49 1.07 16 2 N -0.59 -5.94 2.40 -182.51 -0.44 -6.38 16 3 C 0.13 1.25 4.57 -4.04 -0.02 1.23 16 4 C -0.08 -0.88 0.67 -154.51 -0.10 -0.98 16 5 C -0.12 -1.70 6.91 37.16 0.26 -1.45 16 6 C -0.15 -1.60 6.91 37.16 0.26 -1.34 16 7 C 0.07 0.91 4.65 -3.82 -0.02 0.89 16 8 N -0.66 -11.00 5.34 -115.05 -0.61 -11.61 16 9 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 10 C 0.44 10.67 7.82 -10.98 -0.09 10.58 16 11 O -0.58 -16.15 15.78 5.55 0.09 -16.07 16 12 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16 13 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 14 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 15 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 17 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.59 6.96 6.28 -12.11 -0.08 6.89 16 22 O -0.51 -7.33 14.33 5.37 0.08 -7.25 16 23 C -0.02 -0.24 6.80 -82.52 -0.56 -0.80 16 24 C -0.18 -1.32 11.00 -39.07 -0.43 -1.75 16 25 C -0.06 -0.25 12.28 29.69 0.36 0.11 16 26 O 0.11 0.78 11.18 17.23 0.19 0.97 16 27 N -0.33 -2.90 8.94 33.30 0.30 -2.61 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.54 6.27 -51.93 -0.33 0.21 16 30 H 0.08 0.67 5.91 -51.93 -0.31 0.36 16 31 H 0.08 0.63 8.07 -51.93 -0.42 0.22 16 32 H 0.09 0.95 7.50 -51.93 -0.39 0.56 16 33 H 0.04 0.54 6.06 -51.93 -0.31 0.23 16 34 H 0.07 1.11 7.60 -51.93 -0.39 0.71 16 35 H 0.06 0.89 7.63 -51.93 -0.40 0.49 16 36 H 0.05 0.48 8.07 -51.93 -0.42 0.06 16 37 H 0.07 0.85 6.57 -51.93 -0.34 0.51 16 38 H 0.06 0.57 6.06 -51.93 -0.31 0.26 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.35 5.94 6.47 -39.29 -0.25 5.69 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.18 1.10 8.06 -52.48 -0.42 0.67 16 47 H 0.22 -0.10 8.06 -52.49 -0.42 -0.52 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -34.41 380.91 -5.88 -40.29 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -6.67 Total: 12.18 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -0.20 Total: 7.21 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.09 Total: -59.40 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.36 Total: -22.35 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.41 -5.88 -40.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570669584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.546 kcal (2) G-P(sol) polarization free energy of solvation -34.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds