Wall clock time and date at job start Tue Mar 31 2020 21:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46504 * 119.99978 * 2 1 4 4 C 1.52997 * 109.47058 * 269.99962 * 3 2 1 5 5 C 1.53008 * 109.46990 * 299.99860 * 4 3 2 6 6 C 1.53001 * 109.47227 * 59.99584 * 4 3 2 7 7 C 1.52996 * 109.47050 * 180.02562 * 4 3 2 8 8 N 1.46903 * 109.46878 * 180.02562 * 7 4 3 9 9 C 1.46904 * 110.99643 * 179.97438 * 8 7 4 10 10 C 1.50705 * 109.47005 * 179.97438 * 9 8 7 11 11 O 1.21294 * 119.99883 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99971 * 180.02562 * 10 9 8 13 13 C 1.37101 * 119.99681 * 179.97438 * 12 10 9 14 14 H 1.07996 * 120.00031 * 359.97438 * 13 12 10 15 15 C 1.38956 * 119.99454 * 179.97438 * 13 12 10 16 16 N 1.31403 * 120.00347 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99364 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47369 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47082 * 120.00205 * 17 15 13 20 20 H 1.48502 * 109.46905 * 239.99813 * 17 15 13 21 21 C 1.34775 * 120.00495 * 179.97438 * 2 1 3 22 22 O 1.21496 * 120.00464 * 174.53645 * 21 2 1 23 23 C 1.48331 * 119.99633 * 354.80748 * 21 2 1 24 24 C 1.42274 * 126.94174 * 173.77034 * 23 21 2 25 25 C 1.35313 * 103.92691 * 179.85474 * 24 23 21 26 26 O 1.34020 * 106.66481 * 0.40704 * 25 24 23 27 27 N 1.20902 * 111.84674 * 359.71861 * 26 25 24 28 28 H 1.09004 * 109.47111 * 265.19610 * 1 2 3 29 29 H 1.08996 * 109.47218 * 25.19569 * 1 2 3 30 30 H 1.08999 * 109.46778 * 145.19959 * 1 2 3 31 31 H 1.08998 * 109.46937 * 30.00006 * 3 2 1 32 32 H 1.09004 * 109.47074 * 149.99538 * 3 2 1 33 33 H 1.08995 * 109.46792 * 60.00254 * 5 4 3 34 34 H 1.08998 * 109.46693 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.47198 * 299.99982 * 5 4 3 36 36 H 1.09006 * 109.46633 * 60.00266 * 6 4 3 37 37 H 1.09001 * 109.46848 * 179.97438 * 6 4 3 38 38 H 1.08990 * 109.47347 * 300.00084 * 6 4 3 39 39 H 1.09004 * 109.47246 * 299.99411 * 7 4 3 40 40 H 1.08997 * 109.47360 * 59.99882 * 7 4 3 41 41 H 1.00899 * 111.00280 * 56.04674 * 8 7 4 42 42 H 1.09005 * 109.47106 * 299.99682 * 9 8 7 43 43 H 1.08993 * 109.47245 * 59.99917 * 9 8 7 44 44 H 0.96994 * 120.00049 * 359.97438 * 12 10 9 45 45 H 0.96998 * 120.00198 * 180.02562 * 16 15 13 46 46 H 1.08006 * 128.03206 * 359.97438 * 24 23 21 47 47 H 1.08000 * 126.66892 * 180.12782 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2794 0.6441 -2.1637 6 6 1.1156 1.8933 -2.1638 7 6 3.2180 3.0351 -1.4425 8 7 3.4623 3.4594 -2.8275 9 6 4.1965 4.7312 -2.8667 10 6 4.4286 5.1333 -4.3004 11 8 4.0228 4.4293 -5.2010 12 7 5.0881 6.2745 -4.5820 13 6 5.2997 6.6399 -5.8863 14 1 4.9383 6.0131 -6.6881 15 6 5.9791 7.8168 -6.1765 16 7 6.4192 8.5791 -5.2009 17 14 6.2668 8.3150 -7.9537 18 1 5.6776 7.2932 -8.8559 19 1 5.6260 9.6301 -8.2090 20 1 7.7261 8.4176 -8.2089 21 6 2.1389 -1.1671 0.0005 22 8 3.3497 -1.1696 -0.0997 23 6 1.4019 -2.4490 0.1174 24 6 1.9443 -3.7600 0.0109 25 6 0.8760 -4.5703 0.1932 26 8 -0.1847 -3.7721 0.3778 27 7 0.1191 -2.6027 0.3337 28 1 -0.3633 -0.0861 1.0241 29 1 -0.3633 0.9298 -0.4375 30 1 -0.3633 -0.8439 -0.5865 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 2.7344 -0.2998 -2.1637 34 1 3.4614 0.9590 -3.1912 35 1 4.2318 0.5138 -1.6499 36 1 0.5265 2.6530 -1.6499 37 1 1.2973 2.2083 -3.1913 38 1 0.5707 0.9494 -2.1638 39 1 2.6292 3.7950 -0.9286 40 1 4.1704 2.9044 -0.9288 41 1 2.5976 3.5254 -3.3434 42 1 3.6143 5.5025 -2.3623 43 1 5.1558 4.6125 -2.3631 44 1 5.4129 6.8372 -3.8618 45 1 6.8932 9.4008 -5.4035 46 1 2.9707 -4.0427 -0.1709 47 1 0.8769 -5.6502 0.1862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570669584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:19 Heat of formation + Delta-G solvation = -17.947470 kcal Electronic energy + Delta-G solvation = -29215.244212 eV Core-core repulsion = 25015.274827 eV Total energy + Delta-G solvation = -4199.969384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.08284 -41.37695 -40.18280 -38.78738 -36.66807 -35.95701 -35.12479 -34.18244 -33.24606 -32.70773 -29.13743 -28.86632 -28.28349 -27.34466 -26.72015 -25.32450 -24.10383 -23.78272 -21.16007 -21.06538 -19.99136 -19.70358 -18.90778 -18.78417 -18.01658 -17.85278 -17.28606 -17.03480 -16.85576 -16.45676 -15.92845 -15.62583 -15.32091 -15.19741 -15.09825 -14.69595 -14.37678 -14.32699 -14.21328 -14.09831 -13.87982 -13.63291 -13.45958 -13.19673 -13.01279 -12.86955 -12.55707 -12.52368 -12.43019 -12.41277 -12.12629 -12.01955 -11.73482 -11.65804 -11.52316 -11.46461 -11.26309 -10.68352 -10.35694 -10.02425 -9.75958 -9.26158 -8.47740 -5.96496 0.09961 0.79352 1.35680 1.40778 1.55203 1.69542 2.03273 2.04396 2.28415 2.32451 2.83412 2.96107 3.19488 3.52791 3.58006 3.79058 3.85412 3.92704 4.00065 4.21218 4.26926 4.32822 4.37789 4.42852 4.48545 4.53201 4.57500 4.64889 4.72725 4.75214 4.80610 4.82525 4.89100 4.98491 5.04916 5.07163 5.15190 5.38562 5.40161 5.43553 5.47282 5.89491 6.11632 6.13462 6.43790 6.59434 6.83971 7.09209 7.11747 7.55374 8.10925 8.69905 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.032713 B = 0.001783 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.718149 B =15703.919812 C =15859.233025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.593 5.593 3 C 0.129 3.871 4 C -0.069 4.069 5 C -0.108 4.108 6 C -0.144 4.144 7 C 0.074 3.926 8 N -0.681 5.681 9 C 0.065 3.935 10 C 0.437 3.563 11 O -0.624 6.624 12 N -0.573 5.573 13 C -0.334 4.334 14 H 0.078 0.922 15 C -0.013 4.013 16 N -0.920 5.920 17 Si 0.994 3.006 18 H -0.274 1.274 19 H -0.269 1.269 20 H -0.271 1.271 21 C 0.586 3.414 22 O -0.549 6.549 23 C -0.055 4.055 24 C -0.211 4.211 25 C -0.024 4.024 26 O 0.120 5.880 27 N -0.339 5.339 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.344 0.656 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.184 0.816 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.941 -22.444 17.921 32.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.324 5.324 3 C 0.007 3.993 4 C -0.071 4.071 5 C -0.166 4.166 6 C -0.201 4.201 7 C -0.055 4.055 8 N -0.315 5.315 9 C -0.067 4.067 10 C 0.225 3.775 11 O -0.511 6.511 12 N -0.211 5.211 13 C -0.464 4.464 14 H 0.096 0.904 15 C -0.213 4.213 16 N -0.561 5.561 17 Si 0.817 3.183 18 H -0.199 1.199 19 H -0.194 1.194 20 H -0.196 1.196 21 C 0.372 3.628 22 O -0.426 6.426 23 C -0.212 4.212 24 C -0.234 4.234 25 C -0.104 4.104 26 O 0.045 5.955 27 N -0.041 5.041 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.164 0.836 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.202 0.798 47 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -14.894 -22.157 17.383 31.858 hybrid contribution 0.816 0.887 -0.595 1.344 sum -14.078 -21.270 16.788 30.536 Atomic orbital electron populations 1.22215 0.77068 1.04296 1.03059 1.47682 1.08398 1.05150 1.71170 1.21631 0.97928 0.84181 0.95599 1.20887 0.95868 0.94713 0.95602 1.21545 0.98757 0.96524 0.99764 1.21968 0.95769 1.02152 1.00189 1.21953 0.99980 0.95135 0.88441 1.60051 1.27460 1.29878 1.14131 1.21526 1.00976 0.91905 0.92295 1.20916 0.82400 0.82084 0.92106 1.90489 1.56255 1.54547 1.49776 1.41936 1.50304 1.20698 1.08129 1.19703 1.35497 1.06407 0.84763 0.90435 1.26048 0.95964 0.95438 1.03866 1.69673 1.38411 1.14503 1.33486 0.84861 0.78257 0.78126 0.77019 1.19905 1.19413 1.19634 1.17269 0.86100 0.82563 0.76837 1.90809 1.14234 1.86867 1.50705 1.23633 0.91336 0.97125 1.09125 1.23040 1.03619 0.89553 1.07156 1.26885 0.83139 1.00974 0.99385 1.84777 1.35570 1.11216 1.63962 1.74366 1.14916 0.98368 1.16433 0.91383 0.88613 0.90791 0.87028 0.90542 0.94856 0.93965 0.93994 0.90666 0.93572 0.92063 0.92880 0.90829 0.83568 0.91268 0.88119 0.76943 0.91281 0.79830 0.70951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 8.11 127.77 1.04 2.10 16 2 N -0.59 -11.42 2.40 -849.65 -2.04 -13.45 16 3 C 0.13 2.38 4.57 86.38 0.40 2.78 16 4 C -0.07 -1.55 0.67 -52.18 -0.03 -1.58 16 5 C -0.11 -3.18 6.91 71.98 0.50 -2.68 16 6 C -0.14 -2.90 6.91 71.98 0.50 -2.41 16 7 C 0.07 1.77 4.65 86.30 0.40 2.17 16 8 N -0.68 -22.26 5.34 -517.91 -2.76 -25.03 16 9 C 0.07 2.30 6.17 85.56 0.53 2.83 16 10 C 0.44 21.42 7.82 87.66 0.69 22.11 16 11 O -0.62 -35.68 15.78 -3.07 -0.05 -35.73 16 12 N -0.57 -30.11 5.29 -306.97 -1.62 -31.74 16 13 C -0.33 -19.40 9.68 84.04 0.81 -18.58 16 14 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 15 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 16 N -0.92 -50.25 13.05 21.66 0.28 -49.96 16 17 Si 0.99 43.66 29.55 68.60 2.03 45.69 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 C 0.59 14.02 6.28 86.93 0.55 14.57 16 22 O -0.55 -16.57 14.33 -3.70 -0.05 -16.62 16 23 C -0.05 -1.07 6.80 42.96 0.29 -0.78 16 24 C -0.21 -2.87 11.00 22.60 0.25 -2.62 16 25 C -0.02 -0.14 12.28 67.14 0.82 0.68 16 26 O 0.12 1.38 11.18 71.85 0.80 2.19 16 27 N -0.34 -5.64 8.94 -49.50 -0.44 -6.09 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.03 6.27 -2.39 -0.01 1.02 16 30 H 0.07 1.16 5.91 -2.39 -0.01 1.15 16 31 H 0.11 1.39 8.07 -2.39 -0.02 1.37 16 32 H 0.08 1.62 7.50 -2.38 -0.02 1.60 16 33 H 0.03 0.98 6.06 -2.39 -0.01 0.97 16 34 H 0.04 1.43 7.60 -2.39 -0.02 1.41 16 35 H 0.04 1.34 7.63 -2.39 -0.02 1.32 16 36 H 0.07 1.18 8.07 -2.38 -0.02 1.16 16 37 H 0.05 1.15 6.57 -2.39 -0.02 1.13 16 38 H 0.06 1.17 6.06 -2.39 -0.01 1.16 16 39 H 0.05 1.02 8.14 -2.38 -0.02 1.01 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.34 11.73 6.47 -89.69 -0.58 11.15 16 42 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 43 H 0.10 3.27 8.14 -2.39 -0.02 3.26 16 44 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 45 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 46 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 47 H 0.28 -1.50 8.06 -2.91 -0.02 -1.53 16 Total: -1.00 -78.03 380.91 3.05 -74.98 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: -0.29 Total: 37.43 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 7.20 Total: 18.33 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -6.58 Total: -126.26 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: 0.70 Total: -50.17 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -78.03 3.05 -74.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570669584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.032 kcal (2) G-P(sol) polarization free energy of solvation -78.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds