Wall clock time and date at job start Tue Mar 31 2020 21:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.52998 * 109.46951 * 240.00420 * 2 1 3 5 5 C 1.53003 * 109.47009 * 120.00319 * 2 1 3 6 6 H 1.08994 * 109.46814 * 299.99876 * 5 2 1 7 7 C 1.53001 * 109.46688 * 179.97438 * 5 2 1 8 8 N 1.46903 * 109.46753 * 185.00083 * 7 5 2 9 9 C 1.46901 * 110.99990 * 179.97438 * 8 7 5 10 10 C 1.50704 * 109.46906 * 179.97438 * 9 8 7 11 11 O 1.21292 * 120.00200 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99750 * 179.97438 * 10 9 8 13 13 C 1.37090 * 120.00135 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00123 * 359.97438 * 13 12 10 15 15 C 1.38947 * 120.00415 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00508 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99786 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47443 * 89.99785 * 17 15 13 19 19 H 1.48504 * 109.47001 * 209.99741 * 17 15 13 20 20 H 1.48503 * 109.47027 * 329.99757 * 17 15 13 21 21 N 1.46494 * 109.47085 * 59.99881 * 5 2 1 22 22 C 1.34783 * 120.00202 * 275.00097 * 21 5 2 23 23 O 1.21613 * 119.99322 * 359.97438 * 22 21 5 24 24 C 1.47419 * 120.00132 * 180.02562 * 22 21 5 25 25 C 1.36093 * 126.44627 * 179.97438 * 24 22 21 26 26 O 1.34258 * 106.94734 * 179.73455 * 25 24 22 27 27 C 1.34052 * 108.22713 * 0.39036 * 26 25 24 28 28 N 1.29935 * 109.24422 * 359.59928 * 27 26 25 29 29 H 1.09000 * 109.46912 * 299.99739 * 1 2 3 30 30 H 1.09002 * 109.46999 * 59.99811 * 1 2 3 31 31 H 1.08995 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47200 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47508 * 300.00038 * 3 2 1 34 34 H 1.09000 * 109.47011 * 60.00321 * 3 2 1 35 35 H 1.09003 * 109.47072 * 299.99942 * 4 2 1 36 36 H 1.09002 * 109.47458 * 60.00049 * 4 2 1 37 37 H 1.08999 * 109.47143 * 180.02562 * 4 2 1 38 38 H 1.08996 * 109.47503 * 304.99692 * 7 5 2 39 39 H 1.08997 * 109.46899 * 65.00263 * 7 5 2 40 40 H 1.00897 * 111.00454 * 56.04278 * 8 7 5 41 41 H 1.08994 * 109.46975 * 299.99791 * 9 8 7 42 42 H 1.09001 * 109.46867 * 60.00370 * 9 8 7 43 43 H 0.97001 * 119.99765 * 0.02562 * 12 10 9 44 44 H 0.96995 * 120.00326 * 180.02562 * 16 15 13 45 45 H 0.97007 * 120.00082 * 94.99683 * 21 5 2 46 46 H 1.07994 * 126.52585 * 359.97438 * 25 24 22 47 47 H 1.08002 * 125.38147 * 179.87136 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1392 7 6 3.5700 -0.7219 1.2488 8 7 4.0597 -1.5164 2.3833 9 6 5.5281 -1.5399 2.4148 10 6 5.9923 -2.3618 3.5896 11 8 5.1797 -2.8776 4.3277 12 7 7.3103 -2.5245 3.8194 13 6 7.7326 -3.2726 4.8878 14 1 7.0091 -3.7313 5.5456 15 6 9.0914 -3.4408 5.1245 16 7 9.4962 -4.1575 6.1489 17 14 10.3428 -2.6470 3.9873 18 1 10.6765 -1.2896 4.4888 19 1 11.5736 -3.4771 3.9491 20 1 9.7731 -2.5432 2.6198 21 7 1.5517 -2.1025 1.2492 22 6 0.3296 -2.3853 1.7424 23 8 -0.3673 -1.4938 2.1879 24 6 -0.1616 -3.7752 1.7428 25 6 -1.3663 -4.2068 2.2059 26 8 -1.4075 -5.5346 2.0114 27 6 -0.2505 -5.9121 1.4494 28 7 0.5040 -4.8680 1.2798 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7488 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 3.9330 -1.1564 0.3175 39 1 3.9337 0.3018 1.3383 40 1 3.6838 -2.4524 2.3583 41 1 5.9043 -1.9804 1.4915 42 1 5.9058 -0.5220 2.5121 43 1 7.9601 -2.1123 3.2289 44 1 10.4448 -4.2746 6.3143 45 1 2.1078 -2.8136 0.8940 46 1 -2.1430 -3.5968 2.6428 47 1 0.0113 -6.9237 1.1763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571620108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:32 Heat of formation + Delta-G solvation = -43.514075 kcal Electronic energy + Delta-G solvation = -29806.025048 eV Core-core repulsion = 25604.947013 eV Total energy + Delta-G solvation = -4201.078035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.66611 -40.43034 -38.48702 -37.76898 -35.23703 -35.06837 -33.91399 -33.42926 -31.65256 -30.66515 -29.30784 -27.50886 -27.24520 -26.32062 -24.45313 -23.64086 -22.98056 -22.03194 -20.85280 -19.42267 -19.08298 -18.66251 -18.18007 -16.99985 -16.85749 -16.38219 -16.10872 -15.81502 -15.50532 -15.27175 -14.87253 -14.42852 -14.30233 -14.16080 -13.89788 -13.84014 -13.73715 -13.19901 -13.17446 -12.63352 -12.53626 -12.33259 -12.11862 -11.93378 -11.81256 -11.72113 -11.62089 -11.45079 -11.24554 -11.14395 -11.10999 -10.88932 -10.61548 -10.59011 -10.23006 -9.96872 -9.56458 -9.45030 -9.06027 -8.57091 -8.18631 -8.13115 -6.30221 -3.81628 0.88928 1.81829 2.41562 2.97725 3.02463 3.07243 3.15182 3.19115 3.74956 3.78059 3.99758 4.10920 4.52428 4.57955 4.63714 4.67090 4.78622 4.88292 5.02355 5.16381 5.23536 5.24516 5.32015 5.35104 5.45135 5.52524 5.55166 5.61133 5.66531 5.76639 5.77788 5.79174 5.80971 5.87808 5.92813 5.94764 6.04387 6.15879 6.30232 6.40948 7.04966 7.10281 7.43414 7.53953 7.59212 8.06333 8.15479 8.60860 8.96063 9.43332 9.84022 10.83005 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010907 B = 0.002897 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.548915 B = 9662.288981 C =11578.021774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.078 4.078 3 C -0.142 4.142 4 C -0.144 4.144 5 C 0.159 3.841 6 H 0.101 0.899 7 C 0.046 3.954 8 N -0.667 5.667 9 C 0.048 3.952 10 C 0.450 3.550 11 O -0.563 6.563 12 N -0.591 5.591 13 C -0.304 4.304 14 H 0.119 0.881 15 C 0.041 3.959 16 N -0.882 5.882 17 Si 0.880 3.120 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.270 1.270 21 N -0.701 5.701 22 C 0.607 3.393 23 O -0.531 6.531 24 C -0.073 4.073 25 C 0.014 3.986 26 O -0.200 6.200 27 C 0.180 3.820 28 N -0.465 5.465 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.037 0.963 39 H 0.090 0.910 40 H 0.350 0.650 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.406 0.594 46 H 0.230 0.770 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.488 4.246 -17.934 26.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.080 4.080 3 C -0.199 4.199 4 C -0.202 4.202 5 C 0.054 3.946 6 H 0.119 0.881 7 C -0.083 4.083 8 N -0.300 5.300 9 C -0.085 4.085 10 C 0.235 3.765 11 O -0.444 6.444 12 N -0.230 5.230 13 C -0.433 4.433 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.522 5.522 17 Si 0.707 3.293 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.195 1.195 21 N -0.351 5.351 22 C 0.393 3.607 23 O -0.408 6.408 24 C -0.193 4.193 25 C -0.060 4.060 26 O -0.085 6.085 27 C -0.049 4.049 28 N -0.194 5.194 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.170 0.830 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.241 0.759 46 H 0.246 0.754 47 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -18.793 4.941 -16.784 25.677 hybrid contribution 1.158 -0.549 -1.433 1.923 sum -17.635 4.392 -18.218 25.733 Atomic orbital electron populations 1.21886 0.93603 1.01888 1.01442 1.20950 0.96618 0.95610 0.94831 1.21895 1.01162 0.94756 1.02134 1.21942 1.01052 1.00368 0.96813 1.21143 0.92948 0.81669 0.98799 0.88132 1.22426 0.93379 1.00190 0.92352 1.60021 1.06790 1.20317 1.42877 1.21718 0.88810 1.00963 0.97009 1.19708 0.82916 0.85782 0.88069 1.90578 1.52839 1.51586 1.49420 1.42195 1.05524 1.47825 1.27501 1.19431 0.93141 1.26652 1.04089 0.86324 1.25036 0.96973 0.97283 0.96888 1.69623 1.16070 1.38797 1.27724 0.86664 0.81944 0.80095 0.80613 1.19604 1.20217 1.19546 1.45720 1.17095 1.10247 1.62060 1.16598 0.81741 0.84896 0.77484 1.90829 1.56795 1.46153 1.47050 1.21853 0.94458 0.94861 1.08084 1.25300 0.99942 0.80757 1.00022 1.84448 1.39260 1.23689 1.61148 1.28146 0.79502 1.00899 0.96331 1.70771 1.31260 0.97943 1.19431 0.91658 0.93602 0.92980 0.92203 0.92478 0.92163 0.92674 0.92709 0.92289 0.94462 0.89184 0.82957 0.93754 0.89360 0.79711 0.91632 0.75896 0.75419 0.72946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 7.00 37.16 0.26 -1.09 16 2 C -0.08 -0.73 0.62 -154.51 -0.10 -0.83 16 3 C -0.14 -1.16 8.12 37.16 0.30 -0.86 16 4 C -0.14 -1.21 7.97 37.16 0.30 -0.92 16 5 C 0.16 1.79 1.84 -67.93 -0.12 1.66 16 6 H 0.10 1.37 7.58 -51.93 -0.39 0.98 16 7 C 0.05 0.52 4.58 -3.82 -0.02 0.50 16 8 N -0.67 -10.35 6.12 -115.06 -0.70 -11.05 16 9 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 10 C 0.45 10.30 7.82 -10.98 -0.09 10.22 16 11 O -0.56 -15.39 15.78 5.55 0.09 -15.31 16 12 N -0.59 -14.14 5.09 -10.96 -0.06 -14.20 16 13 C -0.30 -8.69 10.16 -14.94 -0.15 -8.84 16 14 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 15 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 16 N -0.88 -25.92 13.96 55.50 0.77 -25.15 16 17 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 21 N -0.70 -8.21 3.47 -54.88 -0.19 -8.40 16 22 C 0.61 7.89 6.17 -12.52 -0.08 7.81 16 23 O -0.53 -7.82 14.01 5.27 0.07 -7.74 16 24 C -0.07 -0.85 6.99 -83.02 -0.58 -1.43 16 25 C 0.01 0.13 11.95 29.96 0.36 0.49 16 26 O -0.20 -1.70 10.73 6.50 0.07 -1.63 16 27 C 0.18 1.41 13.19 51.96 0.69 2.10 16 28 N -0.46 -5.15 11.06 -11.48 -0.13 -5.28 16 29 H 0.06 0.76 7.53 -51.93 -0.39 0.37 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.60 5.78 -51.93 -0.30 0.30 16 32 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.49 7.60 -51.93 -0.39 0.10 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.47 6.32 -51.93 -0.33 0.14 16 38 H 0.04 0.37 6.17 -51.93 -0.32 0.05 16 39 H 0.09 0.94 6.71 -51.93 -0.35 0.59 16 40 H 0.35 5.81 7.28 -39.29 -0.29 5.53 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.41 4.59 7.88 -40.82 -0.32 4.27 16 46 H 0.23 1.50 8.06 -52.49 -0.42 1.07 16 47 H 0.25 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -35.89 382.56 -4.98 -40.87 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -6.60 Total: 16.83 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 0.64 Total: 10.61 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -0.30 Total: -64.08 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.23 Total: -24.68 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.89 -4.98 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571620108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.647 kcal (2) G-P(sol) polarization free energy of solvation -35.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds