Wall clock time and date at job start Tue Mar 31 2020 21:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.52998 * 109.46951 * 240.00420 * 2 1 3 5 5 C 1.53003 * 109.47009 * 120.00319 * 2 1 3 6 6 H 1.08994 * 109.46814 * 299.99876 * 5 2 1 7 7 C 1.53001 * 109.46688 * 179.97438 * 5 2 1 8 8 N 1.46903 * 109.46753 * 185.00083 * 7 5 2 9 9 C 1.46901 * 110.99990 * 179.97438 * 8 7 5 10 10 C 1.50704 * 109.46906 * 179.97438 * 9 8 7 11 11 O 1.21292 * 120.00200 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99750 * 179.97438 * 10 9 8 13 13 C 1.37090 * 120.00135 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00123 * 359.97438 * 13 12 10 15 15 C 1.38947 * 120.00415 * 179.97438 * 13 12 10 16 16 N 1.31412 * 120.00508 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99786 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47443 * 89.99785 * 17 15 13 19 19 H 1.48504 * 109.47001 * 209.99741 * 17 15 13 20 20 H 1.48503 * 109.47027 * 329.99757 * 17 15 13 21 21 N 1.46494 * 109.47085 * 59.99881 * 5 2 1 22 22 C 1.34783 * 120.00202 * 275.00097 * 21 5 2 23 23 O 1.21613 * 119.99322 * 359.97438 * 22 21 5 24 24 C 1.47419 * 120.00132 * 180.02562 * 22 21 5 25 25 C 1.36093 * 126.44627 * 179.97438 * 24 22 21 26 26 O 1.34258 * 106.94734 * 179.73455 * 25 24 22 27 27 C 1.34052 * 108.22713 * 0.39036 * 26 25 24 28 28 N 1.29935 * 109.24422 * 359.59928 * 27 26 25 29 29 H 1.09000 * 109.46912 * 299.99739 * 1 2 3 30 30 H 1.09002 * 109.46999 * 59.99811 * 1 2 3 31 31 H 1.08995 * 109.47465 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47200 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47508 * 300.00038 * 3 2 1 34 34 H 1.09000 * 109.47011 * 60.00321 * 3 2 1 35 35 H 1.09003 * 109.47072 * 299.99942 * 4 2 1 36 36 H 1.09002 * 109.47458 * 60.00049 * 4 2 1 37 37 H 1.08999 * 109.47143 * 180.02562 * 4 2 1 38 38 H 1.08996 * 109.47503 * 304.99692 * 7 5 2 39 39 H 1.08997 * 109.46899 * 65.00263 * 7 5 2 40 40 H 1.00897 * 111.00454 * 56.04278 * 8 7 5 41 41 H 1.08994 * 109.46975 * 299.99791 * 9 8 7 42 42 H 1.09001 * 109.46867 * 60.00370 * 9 8 7 43 43 H 0.97001 * 119.99765 * 0.02562 * 12 10 9 44 44 H 0.96995 * 120.00326 * 180.02562 * 16 15 13 45 45 H 0.97007 * 120.00082 * 94.99683 * 21 5 2 46 46 H 1.07994 * 126.52585 * 359.97438 * 25 24 22 47 47 H 1.08002 * 125.38147 * 179.87136 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6767 -0.2075 2.1392 7 6 3.5700 -0.7219 1.2488 8 7 4.0597 -1.5164 2.3833 9 6 5.5281 -1.5399 2.4148 10 6 5.9923 -2.3618 3.5896 11 8 5.1797 -2.8776 4.3277 12 7 7.3103 -2.5245 3.8194 13 6 7.7326 -3.2726 4.8878 14 1 7.0091 -3.7313 5.5456 15 6 9.0914 -3.4408 5.1245 16 7 9.4962 -4.1575 6.1489 17 14 10.3428 -2.6470 3.9873 18 1 10.6765 -1.2896 4.4888 19 1 11.5736 -3.4771 3.9491 20 1 9.7731 -2.5432 2.6198 21 7 1.5517 -2.1025 1.2492 22 6 0.3296 -2.3853 1.7424 23 8 -0.3673 -1.4938 2.1879 24 6 -0.1616 -3.7752 1.7428 25 6 -1.3663 -4.2068 2.2059 26 8 -1.4075 -5.5346 2.0114 27 6 -0.2505 -5.9121 1.4494 28 7 0.5040 -4.8680 1.2798 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7488 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7216 -1.2491 38 1 3.9330 -1.1564 0.3175 39 1 3.9337 0.3018 1.3383 40 1 3.6838 -2.4524 2.3583 41 1 5.9043 -1.9804 1.4915 42 1 5.9058 -0.5220 2.5121 43 1 7.9601 -2.1123 3.2289 44 1 10.4448 -4.2746 6.3143 45 1 2.1078 -2.8136 0.8940 46 1 -2.1430 -3.5968 2.6428 47 1 0.0113 -6.9237 1.1763 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571620108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:32 Heat of formation + Delta-G solvation = -75.483421 kcal Electronic energy + Delta-G solvation = -29807.411343 eV Core-core repulsion = 25604.947013 eV Total energy + Delta-G solvation = -4202.464330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.37779 -41.35635 -40.26430 -38.75533 -36.45560 -35.90753 -35.75597 -34.42563 -33.74219 -31.43135 -30.43078 -28.18797 -28.11595 -27.71124 -25.77755 -24.87380 -23.68378 -22.96842 -21.74467 -21.30191 -20.33965 -19.90089 -19.27537 -17.91368 -17.73465 -17.63629 -17.09039 -16.97740 -16.80374 -16.55253 -15.94984 -15.68854 -15.51853 -15.02800 -15.00973 -14.97466 -14.67406 -14.58473 -14.32906 -14.31760 -13.88745 -13.41426 -13.17742 -13.08052 -12.89716 -12.72604 -12.59845 -12.41237 -12.40694 -12.27346 -12.07460 -11.96990 -11.87027 -11.65961 -11.51484 -11.41129 -11.20150 -10.45856 -10.25042 -10.23918 -9.93387 -9.31527 -8.41271 -6.02549 0.12054 1.08168 1.30526 1.36704 1.45442 1.74056 1.95853 2.13389 2.23649 2.28576 2.69097 3.11702 3.15072 3.33995 3.71356 3.83444 3.88192 3.92324 4.02079 4.14817 4.20803 4.32743 4.45539 4.50683 4.54254 4.59887 4.65416 4.70724 4.78061 4.83891 4.92468 4.98244 5.07340 5.08505 5.16628 5.21025 5.31469 5.39771 5.49973 5.52851 5.57872 5.88621 6.02191 6.28984 6.31324 6.59085 6.59836 6.88127 7.11916 7.39634 7.97050 8.76599 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010907 B = 0.002897 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.548915 B = 9662.288981 C =11578.021774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.161 3.839 6 H 0.070 0.930 7 C 0.052 3.948 8 N -0.689 5.689 9 C 0.062 3.938 10 C 0.446 3.554 11 O -0.617 6.617 12 N -0.589 5.589 13 C -0.330 4.330 14 H 0.052 0.948 15 C -0.016 4.016 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.257 1.257 19 H -0.275 1.275 20 H -0.229 1.229 21 N -0.696 5.696 22 C 0.601 3.399 23 O -0.559 6.559 24 C -0.106 4.106 25 C 0.023 3.977 26 O -0.198 6.198 27 C 0.195 3.805 28 N -0.499 5.499 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.107 0.893 40 H 0.340 0.660 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.391 0.609 44 H 0.279 0.721 45 H 0.408 0.592 46 H 0.249 0.751 47 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.250 5.577 -21.620 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.197 4.197 5 C 0.056 3.944 6 H 0.089 0.911 7 C -0.076 4.076 8 N -0.322 5.322 9 C -0.070 4.070 10 C 0.234 3.766 11 O -0.501 6.501 12 N -0.231 5.231 13 C -0.459 4.459 14 H 0.070 0.930 15 C -0.214 4.214 16 N -0.576 5.576 17 Si 0.787 3.213 18 H -0.182 1.182 19 H -0.200 1.200 20 H -0.152 1.152 21 N -0.346 5.346 22 C 0.388 3.612 23 O -0.439 6.439 24 C -0.225 4.225 25 C -0.052 4.052 26 O -0.083 6.083 27 C -0.034 4.034 28 N -0.228 5.228 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.159 0.841 41 H 0.099 0.901 42 H 0.137 0.863 43 H 0.226 0.774 44 H 0.089 0.911 45 H 0.244 0.756 46 H 0.265 0.735 47 H 0.314 0.686 Dipole moment (debyes) X Y Z Total from point charges -17.552 6.298 -20.509 27.720 hybrid contribution 0.627 -1.071 -0.189 1.255 sum -16.925 5.227 -20.698 27.243 Atomic orbital electron populations 1.21806 0.94612 1.00732 1.01066 1.20896 0.95702 0.96436 0.94313 1.21894 1.01917 0.93596 1.02361 1.21905 1.01687 0.99728 0.96390 1.21128 0.93200 0.81368 0.98667 0.91136 1.22505 0.92860 1.00447 0.91821 1.60003 1.06421 1.20203 1.45612 1.21660 0.89403 1.01190 0.94739 1.21055 0.81983 0.84670 0.88870 1.90557 1.54233 1.53555 1.51777 1.42001 1.06578 1.47739 1.26773 1.18996 0.92797 1.28582 1.05546 0.92985 1.26149 0.99151 0.97324 0.98803 1.69809 1.17125 1.40459 1.30233 0.85337 0.77619 0.78869 0.79498 1.18188 1.20038 1.15169 1.45709 1.16727 1.10558 1.61562 1.16871 0.81885 0.85404 0.77089 1.90800 1.57546 1.47099 1.48443 1.21852 0.95754 0.94633 1.10241 1.25690 0.99577 0.81166 0.98735 1.84484 1.39561 1.23169 1.61123 1.29164 0.78434 1.01798 0.94009 1.70729 1.32463 0.98557 1.21052 0.93628 0.92227 0.94556 0.90926 0.91247 0.93025 0.93600 0.91633 0.91114 0.91987 0.87531 0.84097 0.90065 0.86340 0.77364 0.91131 0.75648 0.73474 0.68649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 7.00 71.98 0.50 -2.05 16 2 C -0.07 -1.24 0.62 -52.18 -0.03 -1.27 16 3 C -0.14 -1.96 8.12 71.98 0.58 -1.38 16 4 C -0.14 -1.99 7.97 71.98 0.57 -1.41 16 5 C 0.16 3.53 1.84 44.99 0.08 3.61 16 6 H 0.07 1.99 7.58 -2.39 -0.02 1.97 16 7 C 0.05 1.04 4.58 86.30 0.40 1.44 16 8 N -0.69 -20.40 6.12 -517.93 -3.17 -23.56 16 9 C 0.06 1.85 6.17 85.56 0.53 2.38 16 10 C 0.45 20.31 7.82 87.66 0.69 21.00 16 11 O -0.62 -35.11 15.78 -3.07 -0.05 -35.15 16 12 N -0.59 -27.79 5.09 -306.98 -1.56 -29.35 16 13 C -0.33 -19.52 10.16 84.04 0.85 -18.67 16 14 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 15 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 16 N -0.94 -56.79 13.96 21.66 0.30 -56.49 16 17 Si 0.97 38.54 27.74 68.60 1.90 40.44 16 18 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 19 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 20 H -0.23 -7.53 6.52 99.48 0.65 -6.88 16 21 N -0.70 -16.55 3.47 -445.80 -1.55 -18.10 16 22 C 0.60 16.34 6.17 86.66 0.53 16.87 16 23 O -0.56 -17.45 14.01 -4.07 -0.06 -17.51 16 24 C -0.11 -2.56 6.99 40.41 0.28 -2.27 16 25 C 0.02 0.42 11.95 67.32 0.80 1.23 16 26 O -0.20 -3.16 10.73 0.35 0.00 -3.16 16 27 C 0.19 2.80 13.19 130.52 1.72 4.52 16 28 N -0.50 -11.00 11.06 -305.14 -3.37 -14.37 16 29 H 0.04 1.10 7.53 -2.39 -0.02 1.08 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 0.85 5.78 -2.39 -0.01 0.84 16 32 H 0.07 0.84 6.54 -2.39 -0.02 0.82 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.04 0.74 7.60 -2.39 -0.02 0.73 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.85 6.32 -2.39 -0.02 0.83 16 38 H 0.06 0.98 6.17 -2.39 -0.01 0.96 16 39 H 0.11 1.81 6.71 -2.39 -0.02 1.80 16 40 H 0.34 11.22 7.28 -89.70 -0.65 10.57 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.39 15.02 5.76 -92.71 -0.53 14.49 16 44 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 45 H 0.41 9.25 7.88 -92.70 -0.73 8.52 16 46 H 0.25 3.26 8.06 -2.91 -0.02 3.23 16 47 H 0.30 0.94 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -86.06 382.56 -0.51 -86.56 By element: Atomic # 1 Polarization: 48.05 SS G_CDS: -0.94 Total: 47.11 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 7.98 Total: 23.58 kcal Atomic # 7 Polarization: -132.53 SS G_CDS: -9.35 Total: -141.88 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -0.10 Total: -55.82 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 1.90 Total: 40.44 kcal Total: -86.06 -0.51 -86.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571620108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.081 kcal (2) G-P(sol) polarization free energy of solvation -86.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds