Wall clock time and date at job start Tue Mar 31 2020 21:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47454 * 2 1 4 4 C 1.50698 * 109.46950 * 240.00183 * 2 1 3 5 5 O 1.20827 * 120.00181 * 240.00206 * 4 2 1 6 6 O 1.34232 * 120.00304 * 59.99670 * 4 2 1 7 7 N 1.46500 * 109.47155 * 120.00546 * 2 1 3 8 8 C 1.35810 * 126.05601 * 165.26817 * 7 2 1 9 9 C 1.35755 * 107.56221 * 180.11483 * 8 7 2 10 10 N 1.40766 * 126.07891 * 179.89844 * 9 8 7 11 11 C 1.34772 * 120.00072 * 179.71231 * 10 9 8 12 12 O 1.21307 * 120.00125 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99971 * 180.02562 * 11 10 9 14 14 H 1.09001 * 109.46817 * 319.98961 * 13 11 10 15 15 N 1.46910 * 109.46728 * 199.99907 * 13 11 10 16 16 C 1.52992 * 109.47798 * 79.99728 * 13 11 10 17 17 C 1.52997 * 109.47482 * 185.00026 * 16 13 11 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.46912 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99776 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46725 * 60.00489 * 23 21 19 25 25 H 1.48505 * 109.46988 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47116 * 300.00464 * 23 21 19 27 27 C 1.40254 * 107.83837 * 359.63026 * 9 8 7 28 28 N 1.30827 * 108.33593 * 0.23050 * 27 9 8 29 29 H 1.08998 * 109.47040 * 300.00075 * 1 2 3 30 30 H 1.09006 * 109.47092 * 59.99320 * 1 2 3 31 31 H 1.08997 * 109.47604 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47085 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47196 * 300.00440 * 3 2 1 34 34 H 1.08998 * 109.47058 * 59.99937 * 3 2 1 35 35 H 0.96697 * 117.00448 * 179.97438 * 6 4 2 36 36 H 1.07998 * 126.21787 * 359.97438 * 8 7 2 37 37 H 0.97003 * 119.99528 * 359.71178 * 10 9 8 38 38 H 1.00892 * 110.99957 * 299.99600 * 15 13 11 39 39 H 1.00899 * 110.99816 * 63.94833 * 15 13 11 40 40 H 1.09002 * 109.47103 * 64.99779 * 16 13 11 41 41 H 1.08998 * 109.46862 * 305.00591 * 16 13 11 42 42 H 1.09002 * 109.47153 * 59.99783 * 17 16 13 43 43 H 1.09001 * 109.46832 * 299.99974 * 17 16 13 44 44 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 45 45 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 46 46 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 47 47 H 1.07999 * 125.82914 * 180.25045 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7269 -1.6928 -1.1197 6 8 1.7079 -0.2518 -2.4497 7 7 2.0183 -0.6907 1.1961 8 6 3.2859 -1.1324 1.4026 9 6 3.3218 -1.7163 2.6276 10 7 4.4475 -2.3078 3.2314 11 6 4.3459 -2.8495 4.4612 12 8 3.2845 -2.8270 5.0481 13 6 5.5511 -3.4823 5.1078 14 1 6.1129 -4.0417 4.3597 15 7 5.1132 -4.3934 6.1737 16 6 6.4422 -2.3908 5.7039 17 6 7.7249 -3.0212 6.2499 18 6 8.6156 -1.9297 6.8466 19 6 9.8788 -2.5507 7.3849 20 1 10.0312 -3.6172 7.3086 21 6 10.8404 -1.7573 7.9739 22 7 10.6550 -0.4586 8.0664 23 14 12.4058 -2.5272 8.6418 24 1 13.1302 -3.2108 7.5403 25 1 13.2704 -1.4677 9.2209 26 1 12.0611 -3.5151 9.6955 27 6 2.0394 -1.6198 3.1873 28 7 1.2619 -1.0073 2.3317 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.0540 -0.7405 -3.2089 36 1 4.1142 -1.0384 0.7159 37 1 5.2963 -2.3254 2.7621 38 1 4.5897 -3.8984 6.8800 39 1 4.5762 -5.1598 5.7963 40 1 5.9108 -1.8896 6.5130 41 1 6.6944 -1.6652 4.9307 42 1 8.2563 -3.5224 5.4408 43 1 7.4725 -3.7468 7.0231 44 1 8.8680 -1.2037 6.0737 45 1 8.0840 -1.4289 7.6557 46 1 11.3316 0.0997 8.4804 47 1 1.7442 -1.9880 4.1587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589659920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:57 Heat of formation + Delta-G solvation = -54.373118 kcal Electronic energy + Delta-G solvation = -28843.680733 eV Core-core repulsion = 24642.131814 eV Total energy + Delta-G solvation = -4201.548919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.99459 -40.80652 -39.74024 -36.89254 -36.38428 -35.68442 -34.60139 -33.32939 -31.34412 -30.85402 -29.30183 -28.11426 -27.67693 -25.28024 -25.11397 -22.98863 -22.73100 -21.03554 -20.93233 -19.99854 -19.55589 -18.59109 -17.95083 -17.34325 -16.79534 -16.46489 -16.31866 -15.97112 -15.64209 -15.26351 -14.71168 -14.58083 -14.46512 -14.39725 -14.22505 -13.91977 -13.42063 -13.16681 -12.98194 -12.93614 -12.81986 -12.70128 -12.38221 -12.26440 -12.05368 -11.75096 -11.52303 -11.23819 -11.13200 -10.97646 -10.84548 -10.71352 -10.61466 -10.41155 -10.16531 -9.65534 -9.58941 -9.21037 -9.04132 -8.59773 -8.27883 -7.90379 -5.93718 -3.95333 1.35719 1.41982 1.72008 2.25540 2.42360 3.02426 3.11734 3.37656 3.41605 3.44632 3.88587 3.99104 4.26308 4.45748 4.51325 4.59619 4.79422 4.81047 4.90555 5.00117 5.06444 5.08281 5.17009 5.33265 5.37526 5.41651 5.42068 5.46020 5.59682 5.74996 5.92798 6.01631 6.13149 6.45240 6.55308 6.73154 6.83538 7.02399 7.08738 7.13121 7.25820 7.29956 7.48553 7.52605 7.76297 7.92068 8.07594 8.08125 8.51107 9.12177 9.68254 11.17658 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017828 B = 0.001926 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.170751 B =14537.338179 C =15265.491134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.211 3.789 3 C -0.158 4.158 4 C 0.475 3.525 5 O -0.493 6.493 6 O -0.505 6.505 7 N -0.371 5.371 8 C 0.043 3.957 9 C 0.004 3.996 10 N -0.642 5.642 11 C 0.485 3.515 12 O -0.540 6.540 13 C 0.082 3.918 14 H 0.103 0.897 15 N -0.810 5.810 16 C -0.104 4.104 17 C -0.100 4.100 18 C 0.019 3.981 19 C -0.517 4.517 20 H 0.055 0.945 21 C 0.054 3.946 22 N -0.898 5.898 23 Si 0.891 3.109 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 C 0.061 3.939 28 N -0.280 5.280 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.418 0.582 36 H 0.173 0.827 37 H 0.413 0.587 38 H 0.351 0.649 39 H 0.339 0.661 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.012 0.988 45 H 0.014 0.986 46 H 0.260 0.740 47 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.668 2.000 -22.820 31.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.125 3.875 3 C -0.217 4.217 4 C 0.314 3.686 5 O -0.379 6.379 6 O -0.317 6.317 7 N -0.157 5.157 8 C -0.103 4.103 9 C -0.101 4.101 10 N -0.287 5.287 11 C 0.272 3.728 12 O -0.416 6.416 13 C -0.034 4.034 14 H 0.120 0.880 15 N -0.338 5.338 16 C -0.142 4.142 17 C -0.138 4.138 18 C -0.018 4.018 19 C -0.555 4.555 20 H 0.073 0.927 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.719 3.281 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.202 1.202 27 C -0.127 4.127 28 N -0.100 5.100 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.278 0.722 36 H 0.190 0.810 37 H 0.248 0.752 38 H 0.166 0.834 39 H 0.151 0.849 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.030 0.970 45 H 0.032 0.968 46 H 0.069 0.931 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -22.689 2.443 -22.130 31.788 hybrid contribution 1.590 -0.753 -0.680 1.886 sum -21.099 1.690 -22.809 31.118 Atomic orbital electron populations 1.21957 0.88498 1.04581 1.04974 1.19872 0.97965 0.91629 0.78079 1.22313 1.02641 0.91438 1.05259 1.23295 0.77535 0.82614 0.85202 1.90812 1.34924 1.25276 1.86924 1.84461 1.72122 1.58850 1.16243 1.47961 1.06822 1.47641 1.13289 1.21807 0.89515 1.01933 0.97078 1.17783 0.89961 1.07904 0.94417 1.43092 1.10969 1.56838 1.17816 1.22717 0.92305 0.77672 0.80135 1.90541 1.30150 1.58103 1.62831 1.21758 0.91988 0.95385 0.94255 0.87950 1.59045 1.49368 1.12192 1.13210 1.21671 0.96976 0.95276 1.00313 1.21542 0.92694 0.99731 0.99802 1.19118 0.93643 0.93377 0.95635 1.21246 1.02671 0.93840 1.37738 0.92701 1.25035 0.98488 0.94848 0.96243 1.69956 1.34940 1.03943 1.44899 0.86673 0.83285 0.78810 0.79308 1.20309 1.21412 1.20240 1.24566 0.90004 0.97764 1.00342 1.77366 1.19060 1.20166 0.93450 0.89030 0.89364 0.91022 0.91087 0.88879 0.89545 0.72216 0.80957 0.75192 0.83442 0.84886 0.91770 0.91870 0.93641 0.91776 0.96980 0.96763 0.93068 0.77537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.02 37.16 0.30 -0.56 16 2 C 0.21 1.57 1.18 -132.97 -0.16 1.41 16 3 C -0.16 -0.83 8.66 37.16 0.32 -0.51 16 4 C 0.47 3.51 6.86 36.00 0.25 3.76 16 5 O -0.49 -5.27 15.25 -18.75 -0.29 -5.55 16 6 O -0.50 -2.00 13.23 -39.26 -0.52 -2.52 16 7 N -0.37 -3.98 3.36 -49.40 -0.17 -4.14 16 8 C 0.04 0.47 9.67 -16.68 -0.16 0.31 16 9 C 0.00 0.05 6.90 -83.88 -0.58 -0.53 16 10 N -0.64 -7.48 5.47 -10.04 -0.05 -7.53 16 11 C 0.49 6.49 7.04 -10.99 -0.08 6.42 16 12 O -0.54 -8.40 13.41 5.53 0.07 -8.32 16 13 C 0.08 1.08 3.15 -68.86 -0.22 0.86 16 14 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 15 N -0.81 -10.72 8.44 -5.65 -0.05 -10.77 16 16 C -0.10 -1.68 4.84 -26.74 -0.13 -1.81 16 17 C -0.10 -2.01 5.04 -26.73 -0.13 -2.14 16 18 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 19 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 20 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 21 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 23 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.06 0.84 10.84 -17.22 -0.19 0.65 16 28 N -0.28 -3.57 11.65 30.70 0.36 -3.22 16 29 H 0.09 0.58 8.04 -51.93 -0.42 0.16 16 30 H 0.09 0.32 8.11 -51.93 -0.42 -0.11 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.29 8.11 -51.93 -0.42 -0.13 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.42 0.05 9.10 45.56 0.41 0.46 16 36 H 0.17 1.59 7.50 -52.49 -0.39 1.20 16 37 H 0.41 3.75 8.83 -40.82 -0.36 3.39 16 38 H 0.35 4.81 8.58 -39.30 -0.34 4.47 16 39 H 0.34 3.90 9.06 -39.29 -0.36 3.54 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 1.33 7.75 -51.93 -0.40 0.93 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.21 2.97 5.92 -52.49 -0.31 2.66 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -36.40 397.03 -6.62 -43.03 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.35 Total: 8.09 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -1.32 Total: -5.38 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.83 Total: -52.21 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.73 Total: -16.39 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.40 -6.62 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589659920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.348 kcal (2) G-P(sol) polarization free energy of solvation -36.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds