Wall clock time and date at job start Tue Mar 31 2020 21:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47454 * 2 1 4 4 C 1.50698 * 109.46950 * 240.00183 * 2 1 3 5 5 O 1.20827 * 120.00181 * 240.00206 * 4 2 1 6 6 O 1.34232 * 120.00304 * 59.99670 * 4 2 1 7 7 N 1.46500 * 109.47155 * 120.00546 * 2 1 3 8 8 C 1.35810 * 126.05601 * 165.26817 * 7 2 1 9 9 C 1.35755 * 107.56221 * 180.11483 * 8 7 2 10 10 N 1.40766 * 126.07891 * 179.89844 * 9 8 7 11 11 C 1.34772 * 120.00072 * 179.71231 * 10 9 8 12 12 O 1.21307 * 120.00125 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99971 * 180.02562 * 11 10 9 14 14 H 1.09001 * 109.46817 * 319.98961 * 13 11 10 15 15 N 1.46910 * 109.46728 * 199.99907 * 13 11 10 16 16 C 1.52992 * 109.47798 * 79.99728 * 13 11 10 17 17 C 1.52997 * 109.47482 * 185.00026 * 16 13 11 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.46912 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99776 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00001 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00114 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99955 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46725 * 60.00489 * 23 21 19 25 25 H 1.48505 * 109.46988 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47116 * 300.00464 * 23 21 19 27 27 C 1.40254 * 107.83837 * 359.63026 * 9 8 7 28 28 N 1.30827 * 108.33593 * 0.23050 * 27 9 8 29 29 H 1.08998 * 109.47040 * 300.00075 * 1 2 3 30 30 H 1.09006 * 109.47092 * 59.99320 * 1 2 3 31 31 H 1.08997 * 109.47604 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47085 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47196 * 300.00440 * 3 2 1 34 34 H 1.08998 * 109.47058 * 59.99937 * 3 2 1 35 35 H 0.96697 * 117.00448 * 179.97438 * 6 4 2 36 36 H 1.07998 * 126.21787 * 359.97438 * 8 7 2 37 37 H 0.97003 * 119.99528 * 359.71178 * 10 9 8 38 38 H 1.00892 * 110.99957 * 299.99600 * 15 13 11 39 39 H 1.00899 * 110.99816 * 63.94833 * 15 13 11 40 40 H 1.09002 * 109.47103 * 64.99779 * 16 13 11 41 41 H 1.08998 * 109.46862 * 305.00591 * 16 13 11 42 42 H 1.09002 * 109.47153 * 59.99783 * 17 16 13 43 43 H 1.09001 * 109.46832 * 299.99974 * 17 16 13 44 44 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 45 45 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 46 46 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 47 47 H 1.07999 * 125.82914 * 180.25045 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7269 -1.6928 -1.1197 6 8 1.7079 -0.2518 -2.4497 7 7 2.0183 -0.6907 1.1961 8 6 3.2859 -1.1324 1.4026 9 6 3.3218 -1.7163 2.6276 10 7 4.4475 -2.3078 3.2314 11 6 4.3459 -2.8495 4.4612 12 8 3.2845 -2.8270 5.0481 13 6 5.5511 -3.4823 5.1078 14 1 6.1129 -4.0417 4.3597 15 7 5.1132 -4.3934 6.1737 16 6 6.4422 -2.3908 5.7039 17 6 7.7249 -3.0212 6.2499 18 6 8.6156 -1.9297 6.8466 19 6 9.8788 -2.5507 7.3849 20 1 10.0312 -3.6172 7.3086 21 6 10.8404 -1.7573 7.9739 22 7 10.6550 -0.4586 8.0664 23 14 12.4058 -2.5272 8.6418 24 1 13.1302 -3.2108 7.5403 25 1 13.2704 -1.4677 9.2209 26 1 12.0611 -3.5151 9.6955 27 6 2.0394 -1.6198 3.1873 28 7 1.2619 -1.0073 2.3317 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.0540 -0.7405 -3.2089 36 1 4.1142 -1.0384 0.7159 37 1 5.2963 -2.3254 2.7621 38 1 4.5897 -3.8984 6.8800 39 1 4.5762 -5.1598 5.7963 40 1 5.9108 -1.8896 6.5130 41 1 6.6944 -1.6652 4.9307 42 1 8.2563 -3.5224 5.4408 43 1 7.4725 -3.7468 7.0231 44 1 8.8680 -1.2037 6.0737 45 1 8.0840 -1.4289 7.6557 46 1 11.3316 0.0997 8.4804 47 1 1.7442 -1.9880 4.1587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589659920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:57 Heat of formation + Delta-G solvation = -82.705959 kcal Electronic energy + Delta-G solvation = -28844.909337 eV Core-core repulsion = 24642.131814 eV Total energy + Delta-G solvation = -4202.777523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.79792 -41.52311 -40.71258 -37.43144 -37.23470 -36.84215 -35.54524 -35.21731 -33.10211 -31.70048 -30.26952 -29.33405 -28.50011 -26.68137 -25.81110 -24.39858 -23.72634 -22.15178 -21.82014 -21.56581 -20.46614 -19.10484 -18.71159 -18.42478 -18.27174 -17.68402 -17.09396 -16.95745 -16.57993 -16.46159 -16.22172 -15.68204 -15.46239 -15.37773 -15.23516 -14.80684 -14.52800 -14.25054 -14.01456 -13.97967 -13.61935 -13.48354 -13.26537 -13.21303 -13.08874 -12.82115 -12.74047 -12.59855 -12.45653 -12.37887 -12.15583 -12.06237 -11.88892 -11.58500 -11.44386 -11.34092 -11.20882 -10.92150 -10.54131 -10.49465 -9.70921 -8.83477 -8.15116 -6.25370 0.54289 0.86207 0.97985 1.22879 1.42439 1.45805 1.53416 1.80377 2.03257 2.19140 2.44986 3.17781 3.32235 3.47177 3.50404 3.64129 3.80429 3.89686 3.99888 4.03419 4.18786 4.40380 4.42439 4.53161 4.54901 4.56560 4.61435 4.66782 4.72858 4.96122 5.01559 5.03729 5.11830 5.17776 5.30794 5.35613 5.37748 5.63369 5.67598 5.84890 5.87747 5.96685 6.06060 6.32867 6.35589 6.49547 6.56413 6.73784 6.92547 7.09822 7.43427 8.96410 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017828 B = 0.001926 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.170751 B =14537.338179 C =15265.491134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.197 3.803 3 C -0.154 4.154 4 C 0.484 3.516 5 O -0.531 6.531 6 O -0.489 6.489 7 N -0.365 5.365 8 C 0.054 3.946 9 C -0.019 4.019 10 N -0.630 5.630 11 C 0.486 3.514 12 O -0.564 6.564 13 C 0.094 3.906 14 H 0.126 0.874 15 N -0.816 5.816 16 C -0.095 4.095 17 C -0.084 4.084 18 C 0.021 3.979 19 C -0.539 4.539 20 H 0.060 0.940 21 C -0.004 4.004 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.265 1.265 25 H -0.285 1.285 26 H -0.269 1.269 27 C 0.041 3.959 28 N -0.292 5.292 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.437 0.563 36 H 0.193 0.807 37 H 0.425 0.575 38 H 0.347 0.653 39 H 0.350 0.650 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.057 0.943 44 H -0.008 1.008 45 H -0.016 1.016 46 H 0.262 0.738 47 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.367 1.722 -25.026 32.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.112 3.888 3 C -0.211 4.211 4 C 0.325 3.675 5 O -0.420 6.420 6 O -0.303 6.303 7 N -0.151 5.151 8 C -0.094 4.094 9 C -0.123 4.123 10 N -0.276 5.276 11 C 0.272 3.728 12 O -0.443 6.443 13 C -0.022 4.022 14 H 0.144 0.856 15 N -0.345 5.345 16 C -0.133 4.133 17 C -0.122 4.122 18 C -0.016 4.016 19 C -0.577 4.577 20 H 0.079 0.921 21 C -0.201 4.201 22 N -0.576 5.576 23 Si 0.788 3.212 24 H -0.190 1.190 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.146 4.146 28 N -0.114 5.114 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.139 0.861 34 H 0.100 0.900 35 H 0.300 0.700 36 H 0.210 0.790 37 H 0.263 0.737 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.011 0.989 45 H 0.002 0.998 46 H 0.071 0.929 47 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -22.405 2.167 -24.401 33.198 hybrid contribution 1.416 -0.576 -0.130 1.534 sum -20.989 1.591 -24.531 32.324 Atomic orbital electron populations 1.21983 0.87478 1.03937 1.06220 1.20334 0.98891 0.92502 0.77103 1.22335 1.02574 0.89831 1.06404 1.23149 0.76624 0.81751 0.85980 1.90805 1.36814 1.26888 1.87519 1.84413 1.71494 1.58562 1.15800 1.48335 1.06553 1.46677 1.13558 1.22136 0.90158 1.00518 0.96562 1.17930 0.89909 1.09305 0.95194 1.42946 1.11384 1.55942 1.17307 1.22650 0.91910 0.77684 0.80536 1.90544 1.31049 1.59080 1.63621 1.21591 0.91572 0.94536 0.94470 0.85587 1.59057 1.49647 1.12523 1.13284 1.21474 0.95518 0.96161 1.00153 1.21284 0.93468 0.97703 0.99698 1.19057 0.93871 0.94423 0.94244 1.21718 1.03788 0.94301 1.37877 0.92144 1.25998 1.02302 0.95326 0.96518 1.70096 1.36263 1.05478 1.45779 0.85527 0.78748 0.77998 0.78931 1.18956 1.21034 1.19379 1.24433 0.90930 0.98896 1.00391 1.77299 1.19456 1.20405 0.94197 0.89532 0.86367 0.92565 0.91185 0.86141 0.89983 0.69951 0.78982 0.73678 0.83885 0.83637 0.93397 0.90837 0.92464 0.92452 0.98941 0.99795 0.92929 0.78910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.02 71.98 0.58 -0.88 16 2 C 0.20 2.59 1.18 2.86 0.00 2.59 16 3 C -0.15 -1.26 8.66 71.98 0.62 -0.64 16 4 C 0.48 6.15 6.86 71.24 0.49 6.64 16 5 O -0.53 -10.55 15.25 21.96 0.33 -10.22 16 6 O -0.49 -2.35 13.23 -51.44 -0.68 -3.03 16 7 N -0.36 -7.57 3.36 -310.21 -1.04 -8.61 16 8 C 0.05 1.14 9.67 83.50 0.81 1.95 16 9 C -0.02 -0.48 6.90 37.62 0.26 -0.22 16 10 N -0.63 -14.21 5.47 -304.05 -1.66 -15.87 16 11 C 0.49 12.81 7.04 87.66 0.62 13.43 16 12 O -0.56 -17.88 13.41 -3.11 -0.04 -17.92 16 13 C 0.09 2.38 3.15 44.16 0.14 2.52 16 14 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 15 N -0.82 -21.05 8.44 -171.79 -1.45 -22.50 16 16 C -0.09 -3.02 4.84 30.59 0.15 -2.88 16 17 C -0.08 -3.35 5.04 30.59 0.15 -3.20 16 18 C 0.02 1.12 4.97 29.85 0.15 1.27 16 19 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 20 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 21 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 22 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 23 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 24 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 27 C 0.04 1.15 10.84 85.33 0.92 2.07 16 28 N -0.29 -7.55 11.65 -56.77 -0.66 -8.21 16 29 H 0.09 1.01 8.04 -2.39 -0.02 0.99 16 30 H 0.12 0.50 8.11 -2.38 -0.02 0.48 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.12 0.33 8.11 -2.39 -0.02 0.32 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.44 -1.26 9.10 -74.06 -0.67 -1.94 16 36 H 0.19 3.22 7.50 -2.91 -0.02 3.20 16 37 H 0.43 7.09 8.83 -92.71 -0.82 6.27 16 38 H 0.35 9.53 8.58 -89.70 -0.77 8.76 16 39 H 0.35 7.71 9.06 -89.69 -0.81 6.89 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.06 2.37 7.75 -2.39 -0.02 2.35 16 44 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 45 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 46 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 47 H 0.19 5.90 5.92 -2.91 -0.02 5.88 16 Total: -1.00 -80.01 397.03 0.66 -79.35 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -2.04 Total: 25.58 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 5.59 Total: -7.90 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -4.53 Total: -112.68 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.39 Total: -31.17 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -80.01 0.66 -79.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589659920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.355 kcal (2) G-P(sol) polarization free energy of solvation -80.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds