Wall clock time and date at job start Tue Mar 31 2020 20:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46774 * 2 1 4 4 C 1.53007 * 109.46604 * 185.00207 * 3 2 1 5 5 C 1.52998 * 109.46726 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47212 * 65.00422 * 3 2 1 7 7 C 1.50697 * 109.47657 * 59.99377 * 6 3 2 8 8 O 1.20830 * 119.99938 * 0.02562 * 7 6 3 9 9 O 1.34227 * 120.00514 * 179.97438 * 7 6 3 10 10 N 1.46499 * 109.47313 * 304.99670 * 3 2 1 11 11 C 1.34774 * 119.99813 * 300.00815 * 10 3 2 12 12 O 1.21591 * 120.00400 * 359.97438 * 11 10 3 13 13 N 1.34786 * 119.99447 * 179.97438 * 11 10 3 14 14 C 1.40193 * 119.99510 * 179.97438 * 13 11 10 15 15 C 1.40403 * 125.97737 * 359.97438 * 14 13 11 16 16 C 1.35245 * 107.86997 * 179.71791 * 15 14 13 17 17 N 1.34965 * 107.85767 * 0.42139 * 16 15 14 18 18 C 1.46495 * 125.97869 * 179.83915 * 17 16 15 19 19 C 1.50702 * 109.47571 * 124.71943 * 18 17 16 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 N 1.31216 * 125.97104 * 179.97438 * 14 13 11 28 28 H 1.09001 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47213 * 299.99951 * 1 2 3 30 30 H 1.09006 * 109.47287 * 60.00046 * 1 2 3 31 31 H 1.08998 * 109.47213 * 240.00049 * 2 1 3 32 32 H 1.08995 * 109.47073 * 119.99529 * 2 1 3 33 33 H 1.09000 * 109.47066 * 299.99389 * 4 3 2 34 34 H 1.08998 * 109.47293 * 60.00089 * 4 3 2 35 35 H 1.09004 * 109.47514 * 59.99934 * 5 4 3 36 36 H 1.09005 * 109.46932 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.47593 * 299.99600 * 5 4 3 38 38 H 1.09001 * 109.46970 * 179.97438 * 6 3 2 39 39 H 1.08998 * 109.46850 * 299.99585 * 6 3 2 40 40 H 0.96693 * 117.00531 * 180.02562 * 9 7 6 41 41 H 0.97000 * 119.99893 * 119.99707 * 10 3 2 42 42 H 0.96996 * 119.99831 * 359.97438 * 13 11 10 43 43 H 1.07997 * 126.06240 * 0.02562 * 15 14 13 44 44 H 1.07995 * 126.07276 * 180.26338 * 16 15 14 45 45 H 1.09000 * 109.47378 * 4.71603 * 18 17 16 46 46 H 1.09001 * 109.47153 * 244.71723 * 18 17 16 47 47 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5648 1.4444 -0.1258 5 6 4.0747 2.8869 -0.1264 6 6 1.6352 2.1266 1.3073 7 6 2.2360 1.3814 2.4712 8 8 2.9184 0.4036 2.2752 9 8 2.0141 1.8042 3.7257 10 7 1.4558 2.1671 -1.1315 11 6 1.6791 1.7426 -2.3910 12 8 2.3658 0.7588 -2.5883 13 7 1.1413 2.4089 -3.4319 14 6 1.3740 1.9678 -4.7421 15 6 2.1438 0.8536 -5.1127 16 6 2.1179 0.7616 -6.4618 17 7 1.3698 1.7818 -6.9320 18 6 1.0834 2.0608 -8.3413 19 6 -0.4080 2.1292 -8.5469 20 1 -1.0756 1.9794 -7.7113 21 6 -0.9200 2.3821 -9.8018 22 7 -2.2215 2.4363 -9.9823 23 14 0.2349 2.6405 -11.2472 24 1 0.5614 4.0842 -11.3678 25 1 1.4835 1.8673 -11.0275 26 1 -0.4221 2.1756 -12.4951 27 7 0.9105 2.5240 -5.8364 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 3.9994 0.9054 0.7161 34 1 3.8531 0.9571 -1.0572 35 1 3.7863 3.3747 0.8048 36 1 5.1611 2.8882 -0.2156 37 1 3.6401 3.4256 -0.9684 38 1 1.9989 3.1541 1.3075 39 1 0.5489 2.1252 1.3969 40 1 2.4207 1.2941 4.4394 41 1 0.9082 2.9521 -0.9741 42 1 0.5932 3.1936 -3.2744 43 1 2.6604 0.1854 -4.4397 44 1 2.6107 0.0074 -7.0573 45 1 1.4995 1.2664 -8.9609 46 1 1.5328 3.0134 -8.6217 47 1 -2.5819 2.6103 -10.8659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595050265.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:44 Heat of formation + Delta-G solvation = -27.506251 kcal Electronic energy + Delta-G solvation = -29958.523281 eV Core-core repulsion = 25758.139397 eV Total energy + Delta-G solvation = -4200.383884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46800 -40.66190 -39.81539 -37.63838 -36.29995 -34.63918 -33.39879 -32.44783 -32.32952 -30.96379 -30.03181 -29.33262 -27.12603 -26.11539 -23.46117 -22.57661 -22.08076 -21.80117 -20.52234 -19.81921 -19.44725 -18.55784 -18.01933 -17.03226 -16.70662 -16.67255 -16.57519 -15.87091 -15.56150 -14.98974 -14.94277 -14.54812 -14.37623 -13.85568 -13.72961 -13.58360 -13.42919 -13.05349 -12.97165 -12.85455 -12.54871 -12.42201 -12.31277 -12.14141 -12.05857 -11.64914 -11.61998 -11.20928 -11.03329 -10.93606 -10.83780 -10.63910 -10.52916 -10.40401 -10.02390 -9.93024 -9.54962 -9.47012 -9.17338 -8.75506 -8.13708 -7.44864 -6.22364 -4.24387 1.75240 2.12344 2.62685 2.77433 3.09694 3.17098 3.22260 3.24624 3.57628 3.82866 4.04282 4.23788 4.31300 4.44584 4.53607 4.89944 4.98144 5.03710 5.05759 5.21951 5.25073 5.32763 5.39125 5.45108 5.64214 5.73794 5.74269 5.86821 5.92419 6.01613 6.07193 6.13189 6.21079 6.31562 6.34034 6.43217 6.48031 6.50762 6.60348 6.77103 6.98595 7.29700 7.45881 7.48217 7.85154 7.93531 8.35627 8.62403 8.63038 8.87730 9.32823 10.90347 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029378 B = 0.002172 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.862842 B =12888.372644 C =13153.293417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.150 4.150 3 C 0.219 3.781 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.126 4.126 7 C 0.486 3.514 8 O -0.497 6.497 9 O -0.518 6.518 10 N -0.736 5.736 11 C 0.720 3.280 12 O -0.558 6.558 13 N -0.644 5.644 14 C 0.280 3.720 15 C -0.281 4.281 16 C 0.050 3.950 17 N -0.321 5.321 18 C 0.232 3.768 19 C -0.533 4.533 20 H 0.085 0.915 21 C 0.075 3.925 22 N -0.888 5.888 23 Si 0.875 3.125 24 H -0.272 1.272 25 H -0.265 1.265 26 H -0.281 1.281 27 N -0.302 5.302 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.412 0.588 41 H 0.395 0.605 42 H 0.406 0.594 43 H 0.163 0.837 44 H 0.167 0.833 45 H 0.053 0.947 46 H 0.037 0.963 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.557 0.141 26.179 27.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C 0.132 3.868 4 C -0.190 4.190 5 C -0.207 4.207 6 C -0.164 4.164 7 C 0.328 3.672 8 O -0.385 6.385 9 O -0.330 6.330 10 N -0.392 5.392 11 C 0.419 3.581 12 O -0.433 6.433 13 N -0.295 5.295 14 C 0.026 3.974 15 C -0.312 4.312 16 C -0.099 4.099 17 N -0.103 5.103 18 C 0.113 3.887 19 C -0.571 4.571 20 H 0.103 0.897 21 C -0.128 4.128 22 N -0.526 5.526 23 Si 0.701 3.299 24 H -0.197 1.197 25 H -0.190 1.190 26 H -0.206 1.206 27 N -0.132 5.132 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.271 0.729 41 H 0.229 0.771 42 H 0.241 0.759 43 H 0.181 0.819 44 H 0.185 0.815 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.330 0.181 24.871 26.564 hybrid contribution 0.445 0.104 0.017 0.458 sum 9.775 0.285 24.888 26.740 Atomic orbital electron populations 1.21771 0.96067 1.01703 1.01130 1.22251 0.95688 0.95371 1.05511 1.19803 0.93766 0.91539 0.81673 1.22265 0.93226 0.97741 1.05735 1.21789 1.01075 0.96910 1.00944 1.21613 1.03559 1.01170 0.90046 1.22940 0.77814 0.82766 0.83665 1.90673 1.36361 1.26318 1.85125 1.84514 1.72133 1.59191 1.17164 1.45016 1.56879 1.33367 1.03936 1.15472 0.80198 0.82674 0.79716 1.90813 1.42231 1.26880 1.83411 1.41420 1.53971 1.32042 1.02019 1.18775 0.98988 0.95714 0.83940 1.21537 1.12029 1.03628 0.94037 1.22548 0.98018 0.94303 0.95065 1.48572 1.35777 1.19513 1.06440 1.20030 0.99340 0.97455 0.71836 1.21115 0.88754 1.50435 0.96807 0.89663 1.24840 0.95169 0.94436 0.98390 1.69875 1.11128 1.48220 1.23345 0.86887 0.81225 0.79281 0.82534 1.19735 1.18954 1.20625 1.77384 1.23909 1.20539 0.91414 0.92742 0.93646 0.92543 0.88965 0.89281 0.89129 0.88861 0.93627 0.92764 0.92625 0.86714 0.86751 0.72863 0.77113 0.75919 0.81936 0.81540 0.92953 0.94557 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.45 37.16 0.35 -1.07 16 2 C -0.15 -1.58 4.44 -26.73 -0.12 -1.70 16 3 C 0.22 1.91 0.19 -131.82 -0.02 1.88 16 4 C -0.15 -1.55 4.48 -26.73 -0.12 -1.67 16 5 C -0.15 -1.30 9.40 37.16 0.35 -0.95 16 6 C -0.13 -0.73 4.40 -27.89 -0.12 -0.85 16 7 C 0.49 3.33 7.71 36.00 0.28 3.61 16 8 O -0.50 -4.77 12.12 -18.75 -0.23 -4.99 16 9 O -0.52 -2.45 13.42 -39.25 -0.53 -2.97 16 10 N -0.74 -6.54 3.41 -52.41 -0.18 -6.72 16 11 C 0.72 9.65 7.74 -86.91 -0.67 8.98 16 12 O -0.56 -9.12 9.73 5.29 0.05 -9.07 16 13 N -0.64 -9.48 5.46 -15.50 -0.08 -9.57 16 14 C 0.28 5.47 8.11 -154.36 -1.25 4.22 16 15 C -0.28 -5.41 9.61 -39.83 -0.38 -5.79 16 16 C 0.05 0.96 11.44 -17.24 -0.20 0.77 16 17 N -0.32 -7.26 3.67 -62.56 -0.23 -7.49 16 18 C 0.23 5.52 5.33 -5.20 -0.03 5.49 16 19 C -0.53 -15.04 9.79 -34.44 -0.34 -15.38 16 20 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 21 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 22 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 23 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 N -0.30 -6.84 12.42 31.44 0.39 -6.45 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.34 6.56 -51.93 -0.34 0.00 16 30 H 0.06 0.60 7.29 -51.93 -0.38 0.22 16 31 H 0.09 1.25 6.32 -51.93 -0.33 0.92 16 32 H 0.09 0.96 5.42 -51.93 -0.28 0.68 16 33 H 0.09 0.97 5.52 -51.93 -0.29 0.69 16 34 H 0.09 1.24 6.16 -51.93 -0.32 0.92 16 35 H 0.04 0.31 6.43 -51.93 -0.33 -0.02 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.52 7.60 -51.93 -0.39 0.13 16 38 H 0.11 0.47 6.43 -51.93 -0.33 0.14 16 39 H 0.11 0.49 6.56 -51.93 -0.34 0.15 16 40 H 0.41 0.39 9.10 45.56 0.41 0.80 16 41 H 0.39 2.31 8.49 -40.82 -0.35 1.97 16 42 H 0.41 4.84 8.84 -40.82 -0.36 4.48 16 43 H 0.16 3.05 5.91 -52.49 -0.31 2.74 16 44 H 0.17 2.58 8.06 -52.49 -0.42 2.15 16 45 H 0.05 1.15 7.12 -51.93 -0.37 0.78 16 46 H 0.04 0.85 7.57 -51.93 -0.39 0.45 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -35.80 372.00 -7.03 -42.83 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.56 Total: 9.60 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.37 Total: -0.45 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.67 Total: -56.08 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.70 Total: -17.03 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.80 -7.03 -42.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595050265.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.328 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds