Wall clock time and date at job start Tue Mar 31 2020 20:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46774 * 2 1 4 4 C 1.53007 * 109.46604 * 185.00207 * 3 2 1 5 5 C 1.52998 * 109.46726 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47212 * 65.00422 * 3 2 1 7 7 C 1.50697 * 109.47657 * 59.99377 * 6 3 2 8 8 O 1.20830 * 119.99938 * 0.02562 * 7 6 3 9 9 O 1.34227 * 120.00514 * 179.97438 * 7 6 3 10 10 N 1.46499 * 109.47313 * 304.99670 * 3 2 1 11 11 C 1.34774 * 119.99813 * 300.00815 * 10 3 2 12 12 O 1.21591 * 120.00400 * 359.97438 * 11 10 3 13 13 N 1.34786 * 119.99447 * 179.97438 * 11 10 3 14 14 C 1.40193 * 119.99510 * 179.97438 * 13 11 10 15 15 C 1.40403 * 125.97737 * 359.97438 * 14 13 11 16 16 C 1.35245 * 107.86997 * 179.71791 * 15 14 13 17 17 N 1.34965 * 107.85767 * 0.42139 * 16 15 14 18 18 C 1.46495 * 125.97869 * 179.83915 * 17 16 15 19 19 C 1.50702 * 109.47571 * 124.71943 * 18 17 16 20 20 H 1.08002 * 119.99446 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00072 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 179.72119 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72576 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72423 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72459 * 23 21 19 27 27 N 1.31216 * 125.97104 * 179.97438 * 14 13 11 28 28 H 1.09001 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47213 * 299.99951 * 1 2 3 30 30 H 1.09006 * 109.47287 * 60.00046 * 1 2 3 31 31 H 1.08998 * 109.47213 * 240.00049 * 2 1 3 32 32 H 1.08995 * 109.47073 * 119.99529 * 2 1 3 33 33 H 1.09000 * 109.47066 * 299.99389 * 4 3 2 34 34 H 1.08998 * 109.47293 * 60.00089 * 4 3 2 35 35 H 1.09004 * 109.47514 * 59.99934 * 5 4 3 36 36 H 1.09005 * 109.46932 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.47593 * 299.99600 * 5 4 3 38 38 H 1.09001 * 109.46970 * 179.97438 * 6 3 2 39 39 H 1.08998 * 109.46850 * 299.99585 * 6 3 2 40 40 H 0.96693 * 117.00531 * 180.02562 * 9 7 6 41 41 H 0.97000 * 119.99893 * 119.99707 * 10 3 2 42 42 H 0.96996 * 119.99831 * 359.97438 * 13 11 10 43 43 H 1.07997 * 126.06240 * 0.02562 * 15 14 13 44 44 H 1.07995 * 126.07276 * 180.26338 * 16 15 14 45 45 H 1.09000 * 109.47378 * 4.71603 * 18 17 16 46 46 H 1.09001 * 109.47153 * 244.71723 * 18 17 16 47 47 H 0.96999 * 120.00128 * 180.27192 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5648 1.4444 -0.1258 5 6 4.0747 2.8869 -0.1264 6 6 1.6352 2.1266 1.3073 7 6 2.2360 1.3814 2.4712 8 8 2.9184 0.4036 2.2752 9 8 2.0141 1.8042 3.7257 10 7 1.4558 2.1671 -1.1315 11 6 1.6791 1.7426 -2.3910 12 8 2.3658 0.7588 -2.5883 13 7 1.1413 2.4089 -3.4319 14 6 1.3740 1.9678 -4.7421 15 6 2.1438 0.8536 -5.1127 16 6 2.1179 0.7616 -6.4618 17 7 1.3698 1.7818 -6.9320 18 6 1.0834 2.0608 -8.3413 19 6 -0.4080 2.1292 -8.5469 20 1 -1.0756 1.9794 -7.7113 21 6 -0.9200 2.3821 -9.8018 22 7 -2.2215 2.4363 -9.9823 23 14 0.2349 2.6405 -11.2472 24 1 0.5614 4.0842 -11.3678 25 1 1.4835 1.8673 -11.0275 26 1 -0.4221 2.1756 -12.4951 27 7 0.9105 2.5240 -5.8364 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 3.9994 0.9054 0.7161 34 1 3.8531 0.9571 -1.0572 35 1 3.7863 3.3747 0.8048 36 1 5.1611 2.8882 -0.2156 37 1 3.6401 3.4256 -0.9684 38 1 1.9989 3.1541 1.3075 39 1 0.5489 2.1252 1.3969 40 1 2.4207 1.2941 4.4394 41 1 0.9082 2.9521 -0.9741 42 1 0.5932 3.1936 -3.2744 43 1 2.6604 0.1854 -4.4397 44 1 2.6107 0.0074 -7.0573 45 1 1.4995 1.2664 -8.9609 46 1 1.5328 3.0134 -8.6217 47 1 -2.5819 2.6103 -10.8659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595050265.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:43 Heat of formation + Delta-G solvation = -54.091182 kcal Electronic energy + Delta-G solvation = -29959.676090 eV Core-core repulsion = 25758.139397 eV Total energy + Delta-G solvation = -4201.536693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.38330 -41.86177 -40.81974 -38.47018 -36.88394 -36.03342 -35.20469 -33.71275 -33.13353 -32.53634 -30.90286 -30.63198 -28.91281 -26.90273 -24.84342 -23.80620 -22.88957 -22.86011 -21.92065 -21.16056 -20.38947 -19.19704 -19.04880 -18.99774 -18.10745 -17.25077 -17.21967 -17.00493 -16.87056 -16.26044 -15.93542 -15.84270 -15.61169 -15.26359 -14.81779 -14.55102 -14.51725 -14.36835 -14.09238 -13.82028 -13.73484 -13.68638 -13.57938 -12.99910 -12.93150 -12.72581 -12.64435 -12.37099 -12.35157 -12.16870 -11.83973 -11.80799 -11.79716 -11.60672 -11.39536 -11.27384 -11.20003 -10.86316 -10.63863 -10.09511 -9.69617 -8.99462 -8.36263 -6.46174 1.06021 1.13761 1.26166 1.37555 1.40217 1.49390 1.76405 1.95002 2.29759 2.39679 2.48354 2.96300 3.22196 3.44820 3.82397 3.84370 3.96594 4.24751 4.33178 4.36018 4.50299 4.52319 4.54970 4.60889 4.62254 4.62448 4.80311 4.85719 4.92144 4.97204 4.97510 5.13190 5.15955 5.18839 5.25284 5.30058 5.31094 5.46600 5.49849 5.59717 5.83943 5.88248 5.98700 6.05906 6.44089 6.59326 6.80474 7.06943 7.16233 7.20105 7.54603 8.80708 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029378 B = 0.002172 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.862842 B =12888.372644 C =13153.293417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.146 4.146 3 C 0.220 3.780 4 C -0.148 4.148 5 C -0.145 4.145 6 C -0.122 4.122 7 C 0.491 3.509 8 O -0.531 6.531 9 O -0.511 6.511 10 N -0.712 5.712 11 C 0.718 3.282 12 O -0.587 6.587 13 N -0.639 5.639 14 C 0.289 3.711 15 C -0.291 4.291 16 C 0.057 3.943 17 N -0.346 5.346 18 C 0.240 3.760 19 C -0.545 4.545 20 H 0.026 0.974 21 C 0.013 3.987 22 N -0.942 5.942 23 Si 0.955 3.045 24 H -0.265 1.265 25 H -0.231 1.231 26 H -0.279 1.279 27 N -0.351 5.351 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.429 0.571 41 H 0.415 0.585 42 H 0.419 0.581 43 H 0.167 0.833 44 H 0.206 0.794 45 H 0.081 0.919 46 H 0.044 0.956 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.983 1.090 27.271 29.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.185 4.185 3 C 0.134 3.866 4 C -0.186 4.186 5 C -0.202 4.202 6 C -0.159 4.159 7 C 0.334 3.666 8 O -0.422 6.422 9 O -0.325 6.325 10 N -0.369 5.369 11 C 0.418 3.582 12 O -0.464 6.464 13 N -0.291 5.291 14 C 0.033 3.967 15 C -0.322 4.322 16 C -0.090 4.090 17 N -0.128 5.128 18 C 0.120 3.880 19 C -0.583 4.583 20 H 0.045 0.955 21 C -0.185 4.185 22 N -0.581 5.581 23 Si 0.776 3.224 24 H -0.190 1.190 25 H -0.153 1.153 26 H -0.204 1.204 27 N -0.181 5.181 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.291 0.709 41 H 0.252 0.748 42 H 0.256 0.744 43 H 0.184 0.816 44 H 0.223 0.777 45 H 0.099 0.901 46 H 0.062 0.938 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.750 1.158 26.063 28.217 hybrid contribution -0.040 -0.253 -0.074 0.266 sum 10.710 0.905 25.989 28.124 Atomic orbital electron populations 1.21743 0.95094 1.01593 1.01837 1.22153 0.96428 0.96327 1.03561 1.19775 0.92814 0.91003 0.82983 1.22158 0.94395 0.98481 1.03570 1.21756 1.00748 0.95725 1.02012 1.21601 1.05045 1.01714 0.87585 1.23034 0.77038 0.82111 0.84428 1.90680 1.37989 1.27865 1.85652 1.84471 1.71921 1.59214 1.16900 1.44798 1.56201 1.33585 1.02282 1.15641 0.79796 0.82241 0.80556 1.90806 1.43394 1.28171 1.83997 1.41452 1.54295 1.32632 1.00705 1.19097 0.97465 0.95161 0.85015 1.21717 1.12350 1.03809 0.94354 1.23202 0.96632 0.93701 0.95510 1.48460 1.37414 1.20900 1.06067 1.19868 0.96062 0.98767 0.73311 1.21232 0.90870 1.50738 0.95425 0.95522 1.25922 0.97080 0.93567 1.01975 1.70050 1.13863 1.49698 1.24510 0.85620 0.79624 0.79863 0.77280 1.19005 1.15336 1.20396 1.77300 1.26082 1.22376 0.92388 0.93446 0.90792 0.93768 0.92679 0.89472 0.89607 0.92470 0.90981 0.93238 0.93245 0.84144 0.84382 0.70900 0.74790 0.74416 0.81557 0.77697 0.90128 0.93825 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.45 71.98 0.68 -1.93 16 2 C -0.15 -3.07 4.44 30.60 0.14 -2.93 16 3 C 0.22 3.56 0.19 3.61 0.00 3.56 16 4 C -0.15 -2.97 4.48 30.60 0.14 -2.84 16 5 C -0.15 -2.29 9.40 71.98 0.68 -1.62 16 6 C -0.12 -1.00 4.40 29.85 0.13 -0.87 16 7 C 0.49 5.45 7.71 71.24 0.55 6.00 16 8 O -0.53 -9.56 12.12 21.95 0.27 -9.30 16 9 O -0.51 -3.18 13.42 -51.39 -0.69 -3.87 16 10 N -0.71 -11.65 3.41 -437.99 -1.49 -13.14 16 11 C 0.72 19.13 7.74 179.05 1.39 20.51 16 12 O -0.59 -19.65 9.73 -4.00 -0.04 -19.69 16 13 N -0.64 -18.76 5.46 -321.22 -1.75 -20.52 16 14 C 0.29 11.40 8.11 133.31 1.08 12.48 16 15 C -0.29 -11.22 9.61 22.11 0.21 -11.00 16 16 C 0.06 2.16 11.44 83.52 0.96 3.12 16 17 N -0.35 -15.66 3.67 -351.85 -1.29 -16.95 16 18 C 0.24 11.18 5.33 85.63 0.46 11.64 16 19 C -0.54 -31.56 9.79 25.60 0.25 -31.31 16 20 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 21 C 0.01 0.75 5.47 84.65 0.46 1.22 16 22 N -0.94 -58.22 13.96 21.45 0.30 -57.92 16 23 Si 0.96 40.92 27.47 68.60 1.88 42.81 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.23 -8.56 6.54 99.48 0.65 -7.91 16 26 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 27 N -0.35 -16.25 12.42 -54.43 -0.68 -16.92 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.89 6.56 -2.39 -0.02 0.87 16 30 H 0.04 0.90 7.29 -2.38 -0.02 0.88 16 31 H 0.05 1.58 6.32 -2.39 -0.02 1.56 16 32 H 0.09 1.89 5.42 -2.39 -0.01 1.87 16 33 H 0.09 1.84 5.52 -2.39 -0.01 1.83 16 34 H 0.06 1.58 6.16 -2.39 -0.01 1.57 16 35 H 0.07 0.75 6.43 -2.39 -0.02 0.73 16 36 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.05 0.84 7.60 -2.39 -0.02 0.82 16 38 H 0.14 0.51 6.43 -2.39 -0.02 0.49 16 39 H 0.14 0.56 6.56 -2.39 -0.02 0.54 16 40 H 0.43 -0.38 9.10 -74.06 -0.67 -1.05 16 41 H 0.41 3.74 8.49 -92.71 -0.79 2.95 16 42 H 0.42 9.80 8.84 -92.71 -0.82 8.98 16 43 H 0.17 6.30 5.91 -2.91 -0.02 6.28 16 44 H 0.21 5.81 8.06 -2.91 -0.02 5.79 16 45 H 0.08 3.29 7.12 -2.39 -0.02 3.27 16 46 H 0.04 1.96 7.57 -2.39 -0.02 1.95 16 47 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -83.60 372.00 2.34 -81.26 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: -1.28 Total: 28.23 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 7.12 Total: 6.02 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -4.91 Total: -125.45 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.46 Total: -32.86 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.88 Total: 42.81 kcal Total: -83.60 2.34 -81.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595050265.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.165 kcal (2) G-P(sol) polarization free energy of solvation -83.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds