Wall clock time and date at job start Tue Mar 31 2020 21:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36454 * 127.14037 * 2 1 4 4 N 1.38580 * 126.47095 * 0.02562 * 3 2 1 5 5 C 1.47017 * 111.00282 * 56.64651 * 4 3 2 6 6 C 1.53097 * 109.25803 * 182.39295 * 5 4 3 7 7 O 1.43013 * 109.26018 * 303.15215 * 6 5 4 8 8 C 1.43019 * 113.73451 * 58.67164 * 7 6 5 9 9 H 1.08993 * 109.54195 * 61.28958 * 8 7 6 10 10 C 1.53005 * 109.50073 * 181.39437 * 8 7 6 11 11 C 1.50696 * 109.47237 * 294.77858 * 10 8 7 12 12 O 1.20820 * 120.00134 * 0.02562 * 11 10 8 13 13 O 1.34226 * 119.99815 * 180.02562 * 11 10 8 14 14 C 1.47007 * 111.00182 * 180.28732 * 4 3 2 15 15 N 1.31214 * 107.05543 * 180.26645 * 3 2 1 16 16 N 1.28529 * 109.86230 * 359.73772 * 15 3 2 17 17 C 1.30301 * 110.05096 * 0.02562 * 16 15 3 18 18 C 1.50706 * 126.34374 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.46605 * 117.54207 * 18 17 16 20 20 C 1.52998 * 109.47326 * 357.54481 * 18 17 16 21 21 C 1.50700 * 109.46960 * 237.53922 * 18 17 16 22 22 H 1.07997 * 119.99781 * 0.15461 * 21 18 17 23 23 C 1.37880 * 119.99893 * 180.14986 * 21 18 17 24 24 N 1.31511 * 119.99709 * 0.38840 * 23 21 18 25 25 Si 1.86798 * 119.99795 * 180.38727 * 23 21 18 26 26 H 1.48499 * 109.46803 * 269.99814 * 25 23 21 27 27 H 1.48496 * 109.47537 * 30.00102 * 25 23 21 28 28 H 1.48504 * 109.47051 * 150.00439 * 25 23 21 29 29 H 1.09005 * 109.47120 * 274.92123 * 1 2 3 30 30 H 1.08999 * 109.47117 * 34.92444 * 1 2 3 31 31 H 1.09003 * 109.47229 * 154.92207 * 1 2 3 32 32 H 1.08998 * 109.50791 * 302.33297 * 5 4 3 33 33 H 1.08999 * 109.50132 * 62.46116 * 5 4 3 34 34 H 1.08996 * 109.50434 * 183.21890 * 6 5 4 35 35 H 1.08999 * 109.50748 * 63.09053 * 6 5 4 36 36 H 1.08994 * 109.47199 * 54.78573 * 10 8 7 37 37 H 1.09004 * 109.46876 * 174.78203 * 10 8 7 38 38 H 0.96705 * 117.00208 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.50636 * 297.53816 * 14 4 3 40 40 H 1.08997 * 109.51073 * 57.62575 * 14 4 3 41 41 H 1.09002 * 109.46828 * 186.18948 * 19 18 17 42 42 H 1.08991 * 109.47409 * 306.18733 * 19 18 17 43 43 H 1.09001 * 109.46915 * 66.19559 * 19 18 17 44 44 H 1.09000 * 109.46940 * 307.21773 * 20 18 17 45 45 H 1.08995 * 109.47282 * 67.21485 * 20 18 17 46 46 H 1.09002 * 109.47066 * 187.21933 * 20 18 17 47 47 H 0.97003 * 120.00658 * 357.75400 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2889 1.0878 0.0000 4 7 1.8979 2.4172 0.0005 5 6 1.0257 2.7095 1.1473 6 6 0.5702 4.1695 1.0761 7 8 1.7188 5.0207 1.0387 8 6 2.5899 4.7638 -0.0661 9 1 2.0540 4.9334 -1.0000 10 6 3.7977 5.7003 0.0072 11 6 3.3407 7.1247 -0.1747 12 8 2.1692 7.3662 -0.3451 13 8 4.2352 8.1251 -0.1475 14 6 3.0658 3.3099 -0.0066 15 7 3.5212 0.6372 -0.0058 16 7 3.5162 -0.6481 -0.0039 17 6 2.2905 -1.0901 0.0027 18 6 1.8621 -2.5350 0.0064 19 6 1.0840 -2.8329 1.2897 20 6 3.0985 -3.4337 -0.0606 21 6 0.9822 -2.8011 -1.1878 22 1 0.7579 -2.0043 -1.8815 23 6 0.4636 -4.0618 -1.3948 24 7 0.7307 -5.0301 -0.5459 25 14 -0.6182 -4.3942 -2.8809 26 1 -2.0376 -4.1392 -2.5268 27 1 -0.2173 -3.4985 -3.9954 28 1 -0.4597 -5.8095 -3.3018 29 1 -0.3633 0.0882 1.0239 30 1 -0.3633 0.8426 -0.5883 31 1 -0.3634 -0.9308 -0.4356 32 1 0.1548 2.0547 1.1185 33 1 1.5754 2.5446 2.0739 34 1 -0.0301 4.4066 1.9545 35 1 -0.0251 4.3216 0.1758 36 1 4.2807 5.5948 0.9786 37 1 4.5057 5.4424 -0.7805 38 1 3.8945 9.0221 -0.2685 39 1 3.6482 3.1546 0.9017 40 1 3.6846 3.0929 -0.8772 41 1 0.8693 -3.9001 1.3449 42 1 1.6800 -2.5370 2.1529 43 1 0.1483 -2.2738 1.2853 44 1 3.7194 -3.1351 -0.9052 45 1 3.6694 -3.3357 0.8626 46 1 2.7874 -4.4707 -0.1871 47 1 1.3187 -4.8659 0.2079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600919741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:38 Heat of formation + Delta-G solvation = -36.347443 kcal Electronic energy + Delta-G solvation = -30716.892199 eV Core-core repulsion = 26516.124932 eV Total energy + Delta-G solvation = -4200.767267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.44408 -40.69362 -39.62062 -36.63165 -36.37232 -35.81653 -34.23316 -33.32373 -31.27273 -29.74282 -28.34455 -27.29461 -26.34008 -25.92137 -25.38378 -24.03641 -22.07497 -21.79749 -20.80713 -20.34969 -19.14731 -18.32135 -17.62320 -17.10026 -16.92805 -16.86283 -15.95791 -15.79570 -15.71103 -15.14457 -14.97687 -14.56855 -14.31702 -13.97501 -13.82210 -13.33067 -13.20616 -13.05856 -12.74484 -12.62013 -12.41915 -12.00008 -11.83922 -11.77105 -11.57882 -11.45191 -11.38522 -11.02825 -10.90209 -10.85751 -10.82009 -10.69575 -10.36327 -10.23143 -10.20223 -10.12736 -9.83097 -9.59910 -9.27978 -8.68565 -8.49488 -7.76376 -6.42687 -4.30933 1.95748 2.32614 2.54273 2.83021 3.30639 3.35691 3.37063 3.49035 3.51725 3.79352 4.36644 4.38215 4.45937 4.60290 4.76337 4.81676 4.95395 5.00727 5.11477 5.18179 5.19440 5.25121 5.32747 5.37047 5.42381 5.47602 5.57822 5.63704 5.76566 5.95601 5.97640 6.20561 6.24087 6.34618 6.44744 6.54857 6.71277 6.73535 6.84957 6.94116 6.95678 7.03966 7.28596 7.54693 7.61154 7.63951 7.93815 8.17114 8.64618 9.38452 9.44044 10.82429 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022715 B = 0.002652 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.345621 B =10555.862283 C =10850.425477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.471 5.471 3 C 0.317 3.683 4 N -0.444 5.444 5 C 0.010 3.990 6 C 0.072 3.928 7 O -0.372 6.372 8 C 0.104 3.896 9 H 0.081 0.919 10 C -0.106 4.106 11 C 0.481 3.519 12 O -0.503 6.503 13 O -0.520 6.520 14 C 0.045 3.955 15 N -0.326 5.326 16 N -0.311 5.311 17 C 0.252 3.748 18 C 0.131 3.869 19 C -0.143 4.143 20 C -0.132 4.132 21 C -0.595 4.595 22 H 0.051 0.949 23 C 0.034 3.966 24 N -0.908 5.908 25 Si 1.067 2.933 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.282 1.282 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.410 0.590 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.022 0.978 43 H 0.041 0.959 44 H 0.047 0.953 45 H 0.027 0.973 46 H 0.074 0.926 47 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.484 20.054 3.301 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.165 5.165 3 C -0.040 4.040 4 N -0.168 5.168 5 C -0.118 4.118 6 C -0.005 4.005 7 O -0.291 6.291 8 C 0.045 3.955 9 H 0.099 0.901 10 C -0.144 4.144 11 C 0.323 3.677 12 O -0.389 6.389 13 O -0.333 6.333 14 C -0.083 4.083 15 N -0.171 5.171 16 N -0.149 5.149 17 C -0.015 4.015 18 C 0.128 3.872 19 C -0.201 4.201 20 C -0.191 4.191 21 C -0.633 4.633 22 H 0.070 0.930 23 C -0.172 4.172 24 N -0.547 5.547 25 Si 0.895 3.105 26 H -0.213 1.213 27 H -0.215 1.215 28 H -0.207 1.207 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.139 0.861 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.083 0.917 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.269 0.731 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.093 0.907 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.689 18.793 2.271 18.943 hybrid contribution -0.496 1.570 1.064 1.960 sum 0.194 20.364 3.334 20.636 Atomic orbital electron populations 1.22273 0.75940 1.06607 1.02402 1.45883 1.08546 1.05426 1.56615 1.22290 0.87779 0.86512 1.07415 1.58771 1.18945 0.98009 1.41078 1.23111 0.97993 0.99107 0.91578 1.22618 0.87866 0.86842 1.03153 1.88003 1.35283 1.58474 1.47303 1.21939 0.90228 0.91681 0.91632 0.90150 1.21327 0.98888 0.87071 1.07148 1.23215 0.83867 0.88229 0.72391 1.90753 1.18970 1.84902 1.44318 1.84528 1.43844 1.19969 1.84938 1.22629 0.90884 0.90192 1.04577 1.74403 1.15350 1.04686 1.22647 1.73968 1.18101 1.01429 1.21355 1.25661 0.85196 0.92359 0.98317 1.17042 0.94202 0.80241 0.95721 1.22103 0.98726 1.03453 0.95868 1.21836 0.96503 1.01280 0.99461 1.21705 1.33324 0.98771 1.09531 0.93031 1.25678 0.97828 0.91917 1.01740 1.70862 1.34626 1.34836 1.14384 0.83563 0.75677 0.76349 0.74921 1.21337 1.21466 1.20731 0.91584 0.90333 0.86107 0.88881 0.92688 0.87716 0.91706 0.86448 0.85627 0.73132 0.91782 0.87946 0.90325 0.95934 0.94002 0.93413 0.95391 0.90713 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 8.15 59.85 0.49 1.59 16 2 N -0.47 -9.13 3.21 -121.45 -0.39 -9.52 16 3 C 0.32 5.90 7.22 -318.88 -2.30 3.60 16 4 N -0.44 -6.44 4.77 -174.21 -0.83 -7.27 16 5 C 0.01 0.12 5.48 -3.71 -0.02 0.10 16 6 C 0.07 0.73 7.01 37.21 0.26 1.00 16 7 O -0.37 -4.35 9.72 -49.41 -0.48 -4.83 16 8 C 0.10 1.09 2.35 -26.68 -0.06 1.02 16 9 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 10 C -0.11 -0.83 5.53 -27.88 -0.15 -0.99 16 11 C 0.48 4.42 8.21 36.00 0.30 4.72 16 12 O -0.50 -6.34 16.19 -23.99 -0.39 -6.73 16 13 O -0.52 -3.50 13.42 -39.25 -0.53 -4.03 16 14 C 0.04 0.56 4.30 -3.72 -0.02 0.54 16 15 N -0.33 -6.96 11.31 30.31 0.34 -6.62 16 16 N -0.31 -7.33 11.44 32.99 0.38 -6.96 16 17 C 0.25 5.71 6.27 -154.01 -0.97 4.74 16 18 C 0.13 3.06 0.52 -156.81 -0.08 2.98 16 19 C -0.14 -3.09 7.99 37.16 0.30 -2.79 16 20 C -0.13 -3.13 7.71 37.16 0.29 -2.84 16 21 C -0.59 -14.88 6.30 -34.44 -0.22 -15.10 16 22 H 0.05 1.33 7.29 -52.49 -0.38 0.94 16 23 C 0.03 0.87 5.12 -17.82 -0.09 0.78 16 24 N -0.91 -24.26 12.36 55.43 0.69 -23.58 16 25 Si 1.07 23.09 29.90 -169.99 -5.08 18.01 16 26 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.29 -6.14 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 30 H 0.08 1.05 7.90 -51.93 -0.41 0.64 16 31 H 0.12 2.14 5.53 -51.93 -0.29 1.85 16 32 H 0.09 1.04 5.39 -51.93 -0.28 0.76 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.41 1.14 9.10 45.56 0.41 1.56 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 1.29 8.05 -51.93 -0.42 0.87 16 41 H 0.08 1.80 5.34 -51.93 -0.28 1.53 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.04 0.84 6.72 -51.93 -0.35 0.49 16 44 H 0.05 1.16 8.05 -51.93 -0.42 0.74 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 1.84 5.22 -51.93 -0.27 1.57 16 47 H 0.28 7.38 3.31 -40.82 -0.13 7.25 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -33.51 368.36 -8.82 -42.33 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.80 Total: 4.30 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -2.28 Total: -0.65 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.18 Total: -53.95 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -1.40 Total: -15.60 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.08 Total: 18.01 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.51 -8.82 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600919741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.983 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds