Wall clock time and date at job start Tue Mar 31 2020 21:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36454 * 127.14037 * 2 1 4 4 N 1.38580 * 126.47095 * 0.02562 * 3 2 1 5 5 C 1.47017 * 111.00282 * 56.64651 * 4 3 2 6 6 C 1.53097 * 109.25803 * 182.39295 * 5 4 3 7 7 O 1.43013 * 109.26018 * 303.15215 * 6 5 4 8 8 C 1.43019 * 113.73451 * 58.67164 * 7 6 5 9 9 H 1.08993 * 109.54195 * 61.28958 * 8 7 6 10 10 C 1.53005 * 109.50073 * 181.39437 * 8 7 6 11 11 C 1.50696 * 109.47237 * 294.77858 * 10 8 7 12 12 O 1.20820 * 120.00134 * 0.02562 * 11 10 8 13 13 O 1.34226 * 119.99815 * 180.02562 * 11 10 8 14 14 C 1.47007 * 111.00182 * 180.28732 * 4 3 2 15 15 N 1.31214 * 107.05543 * 180.26645 * 3 2 1 16 16 N 1.28529 * 109.86230 * 359.73772 * 15 3 2 17 17 C 1.30301 * 110.05096 * 0.02562 * 16 15 3 18 18 C 1.50706 * 126.34374 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.46605 * 117.54207 * 18 17 16 20 20 C 1.52998 * 109.47326 * 357.54481 * 18 17 16 21 21 C 1.50700 * 109.46960 * 237.53922 * 18 17 16 22 22 H 1.07997 * 119.99781 * 0.15461 * 21 18 17 23 23 C 1.37880 * 119.99893 * 180.14986 * 21 18 17 24 24 N 1.31511 * 119.99709 * 0.38840 * 23 21 18 25 25 Si 1.86798 * 119.99795 * 180.38727 * 23 21 18 26 26 H 1.48499 * 109.46803 * 269.99814 * 25 23 21 27 27 H 1.48496 * 109.47537 * 30.00102 * 25 23 21 28 28 H 1.48504 * 109.47051 * 150.00439 * 25 23 21 29 29 H 1.09005 * 109.47120 * 274.92123 * 1 2 3 30 30 H 1.08999 * 109.47117 * 34.92444 * 1 2 3 31 31 H 1.09003 * 109.47229 * 154.92207 * 1 2 3 32 32 H 1.08998 * 109.50791 * 302.33297 * 5 4 3 33 33 H 1.08999 * 109.50132 * 62.46116 * 5 4 3 34 34 H 1.08996 * 109.50434 * 183.21890 * 6 5 4 35 35 H 1.08999 * 109.50748 * 63.09053 * 6 5 4 36 36 H 1.08994 * 109.47199 * 54.78573 * 10 8 7 37 37 H 1.09004 * 109.46876 * 174.78203 * 10 8 7 38 38 H 0.96705 * 117.00208 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.50636 * 297.53816 * 14 4 3 40 40 H 1.08997 * 109.51073 * 57.62575 * 14 4 3 41 41 H 1.09002 * 109.46828 * 186.18948 * 19 18 17 42 42 H 1.08991 * 109.47409 * 306.18733 * 19 18 17 43 43 H 1.09001 * 109.46915 * 66.19559 * 19 18 17 44 44 H 1.09000 * 109.46940 * 307.21773 * 20 18 17 45 45 H 1.08995 * 109.47282 * 67.21485 * 20 18 17 46 46 H 1.09002 * 109.47066 * 187.21933 * 20 18 17 47 47 H 0.97003 * 120.00658 * 357.75400 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2889 1.0878 0.0000 4 7 1.8979 2.4172 0.0005 5 6 1.0257 2.7095 1.1473 6 6 0.5702 4.1695 1.0761 7 8 1.7188 5.0207 1.0387 8 6 2.5899 4.7638 -0.0661 9 1 2.0540 4.9334 -1.0000 10 6 3.7977 5.7003 0.0072 11 6 3.3407 7.1247 -0.1747 12 8 2.1692 7.3662 -0.3451 13 8 4.2352 8.1251 -0.1475 14 6 3.0658 3.3099 -0.0066 15 7 3.5212 0.6372 -0.0058 16 7 3.5162 -0.6481 -0.0039 17 6 2.2905 -1.0901 0.0027 18 6 1.8621 -2.5350 0.0064 19 6 1.0840 -2.8329 1.2897 20 6 3.0985 -3.4337 -0.0606 21 6 0.9822 -2.8011 -1.1878 22 1 0.7579 -2.0043 -1.8815 23 6 0.4636 -4.0618 -1.3948 24 7 0.7307 -5.0301 -0.5459 25 14 -0.6182 -4.3942 -2.8809 26 1 -2.0376 -4.1392 -2.5268 27 1 -0.2173 -3.4985 -3.9954 28 1 -0.4597 -5.8095 -3.3018 29 1 -0.3633 0.0882 1.0239 30 1 -0.3633 0.8426 -0.5883 31 1 -0.3634 -0.9308 -0.4356 32 1 0.1548 2.0547 1.1185 33 1 1.5754 2.5446 2.0739 34 1 -0.0301 4.4066 1.9545 35 1 -0.0251 4.3216 0.1758 36 1 4.2807 5.5948 0.9786 37 1 4.5057 5.4424 -0.7805 38 1 3.8945 9.0221 -0.2685 39 1 3.6482 3.1546 0.9017 40 1 3.6846 3.0929 -0.8772 41 1 0.8693 -3.9001 1.3449 42 1 1.6800 -2.5370 2.1529 43 1 0.1483 -2.2738 1.2853 44 1 3.7194 -3.1351 -0.9052 45 1 3.6694 -3.3357 0.8626 46 1 2.7874 -4.4707 -0.1871 47 1 1.3187 -4.8659 0.2079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600919741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:37 Heat of formation + Delta-G solvation = -57.259684 kcal Electronic energy + Delta-G solvation = -30717.799022 eV Core-core repulsion = 26516.124932 eV Total energy + Delta-G solvation = -4201.674090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.99020 -41.46516 -40.52066 -38.27632 -37.25660 -36.87265 -35.67244 -34.15182 -33.09771 -30.84974 -29.58718 -28.65884 -27.92205 -27.33501 -27.26496 -24.97338 -23.42610 -23.03150 -21.72970 -21.54351 -20.83585 -19.39531 -19.00594 -18.24750 -17.85276 -17.60362 -17.37014 -17.05116 -16.49680 -16.20267 -16.18437 -15.69547 -15.55359 -15.50375 -15.33474 -14.95797 -14.33204 -13.99333 -13.91061 -13.69979 -13.56852 -13.35366 -13.24818 -13.19976 -12.75710 -12.66242 -12.58227 -12.46281 -12.45709 -12.39352 -12.06982 -12.01117 -11.93917 -11.82244 -11.64557 -11.51239 -11.18464 -10.94660 -10.65768 -10.44184 -10.41328 -9.27129 -8.41870 -6.30913 0.85713 1.26377 1.28195 1.57847 1.64980 1.81628 1.86789 2.09248 2.53118 2.58434 2.62581 3.21505 3.48934 3.60980 3.66505 3.70486 3.83345 3.92916 4.02322 4.08711 4.19869 4.27320 4.32843 4.37519 4.45584 4.49166 4.53920 4.58436 4.63215 4.69030 4.72015 4.73161 4.81573 4.87778 4.92201 5.06941 5.08763 5.16867 5.31194 5.45113 5.60970 5.67294 5.68053 6.01882 6.02499 6.16484 6.19808 6.66824 7.04747 7.44826 7.82288 8.84288 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022715 B = 0.002652 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.345621 B =10555.862283 C =10850.425477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.472 5.472 3 C 0.336 3.664 4 N -0.444 5.444 5 C 0.011 3.989 6 C 0.075 3.925 7 O -0.384 6.384 8 C 0.112 3.888 9 H 0.074 0.926 10 C -0.106 4.106 11 C 0.488 3.512 12 O -0.543 6.543 13 O -0.514 6.514 14 C 0.047 3.953 15 N -0.355 5.355 16 N -0.340 5.340 17 C 0.231 3.769 18 C 0.127 3.873 19 C -0.130 4.130 20 C -0.123 4.123 21 C -0.594 4.594 22 H 0.040 0.960 23 C -0.004 4.004 24 N -0.931 5.931 25 Si 1.106 2.894 26 H -0.268 1.268 27 H -0.284 1.284 28 H -0.288 1.288 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.048 0.952 34 H 0.130 0.870 35 H 0.069 0.931 36 H 0.131 0.869 37 H 0.151 0.849 38 H 0.427 0.573 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.052 0.948 44 H 0.030 0.970 45 H 0.035 0.965 46 H 0.061 0.939 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.504 22.195 3.534 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.166 5.166 3 C -0.021 4.021 4 N -0.169 5.169 5 C -0.116 4.116 6 C -0.002 4.002 7 O -0.303 6.303 8 C 0.053 3.947 9 H 0.091 0.909 10 C -0.143 4.143 11 C 0.331 3.669 12 O -0.433 6.433 13 O -0.328 6.328 14 C -0.080 4.080 15 N -0.199 5.199 16 N -0.178 5.178 17 C -0.038 4.038 18 C 0.124 3.876 19 C -0.189 4.189 20 C -0.181 4.181 21 C -0.632 4.632 22 H 0.059 0.941 23 C -0.205 4.205 24 N -0.571 5.571 25 Si 0.930 3.070 26 H -0.193 1.193 27 H -0.210 1.210 28 H -0.214 1.214 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.066 0.934 34 H 0.148 0.852 35 H 0.087 0.913 36 H 0.149 0.851 37 H 0.168 0.832 38 H 0.289 0.711 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.080 0.920 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.295 20.980 2.521 21.133 hybrid contribution -0.142 1.062 0.995 1.462 sum -0.437 22.042 3.516 22.325 Atomic orbital electron populations 1.22480 0.73861 1.06594 1.04549 1.46007 1.09724 1.04724 1.56096 1.22706 0.87002 0.87874 1.04510 1.58941 1.19800 0.95964 1.42164 1.23234 0.97581 1.00725 0.90031 1.22758 0.87633 0.85208 1.04599 1.88007 1.35796 1.58786 1.47669 1.21892 0.90954 0.90736 0.91116 0.90850 1.21392 0.98108 0.85924 1.08871 1.23352 0.83359 0.88945 0.71231 1.90743 1.20562 1.85539 1.46411 1.84489 1.43194 1.20893 1.84247 1.22695 0.90255 0.90962 1.04136 1.74312 1.16957 1.03851 1.24804 1.73866 1.19097 1.02735 1.22105 1.25375 0.85707 0.92697 1.00044 1.16975 0.93687 0.81005 0.95931 1.21940 0.99121 1.02513 0.95346 1.21712 0.96740 1.00583 0.99083 1.21801 1.33221 0.98397 1.09784 0.94119 1.26729 0.98666 0.91923 1.03201 1.70926 1.35648 1.35449 1.15094 0.83030 0.75515 0.75790 0.72634 1.19307 1.21025 1.21365 0.88780 0.87826 0.88130 0.87804 0.93354 0.85203 0.91313 0.85116 0.83158 0.71094 0.92245 0.88384 0.91835 0.95064 0.92856 0.95079 0.94597 0.92004 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.94 8.15 127.77 1.04 2.99 16 2 N -0.47 -17.80 3.21 -538.16 -1.73 -19.52 16 3 C 0.34 12.18 7.22 260.11 1.88 14.05 16 4 N -0.44 -12.10 4.77 -705.09 -3.36 -15.47 16 5 C 0.01 0.24 5.48 86.31 0.47 0.71 16 6 C 0.07 1.31 7.01 72.01 0.50 1.82 16 7 O -0.38 -8.12 9.72 -135.43 -1.32 -9.44 16 8 C 0.11 2.13 2.35 30.63 0.07 2.20 16 9 H 0.07 1.52 7.95 -2.39 -0.02 1.50 16 10 C -0.11 -1.41 5.53 29.85 0.16 -1.24 16 11 C 0.49 7.97 8.21 71.23 0.58 8.56 16 12 O -0.54 -12.92 16.19 26.99 0.44 -12.48 16 13 O -0.51 -5.68 13.42 -51.38 -0.69 -6.37 16 14 C 0.05 1.09 4.30 86.31 0.37 1.46 16 15 N -0.35 -15.10 11.31 -58.01 -0.66 -15.76 16 16 N -0.34 -16.21 11.44 -49.53 -0.57 -16.78 16 17 C 0.23 10.45 6.27 137.64 0.86 11.32 16 18 C 0.13 5.97 0.52 -53.67 -0.03 5.94 16 19 C -0.13 -5.61 7.99 71.98 0.58 -5.03 16 20 C -0.12 -5.94 7.71 71.98 0.55 -5.38 16 21 C -0.59 -29.79 6.30 25.60 0.16 -29.63 16 22 H 0.04 2.09 7.29 -2.91 -0.02 2.07 16 23 C 0.00 -0.20 5.12 84.66 0.43 0.24 16 24 N -0.93 -50.13 12.36 21.45 0.27 -49.86 16 25 Si 1.11 46.18 29.90 68.60 2.05 48.23 16 26 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 27 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 28 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 29 H 0.09 2.20 7.56 -2.38 -0.02 2.19 16 30 H 0.10 2.47 7.90 -2.39 -0.02 2.45 16 31 H 0.10 3.43 5.53 -2.39 -0.01 3.41 16 32 H 0.10 1.98 5.39 -2.39 -0.01 1.97 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.15 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.43 1.41 9.10 -74.05 -0.67 0.74 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.10 2.37 8.05 -2.39 -0.02 2.35 16 41 H 0.06 2.93 5.34 -2.39 -0.01 2.91 16 42 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.05 2.11 6.72 -2.39 -0.02 2.09 16 44 H 0.03 1.54 8.05 -2.39 -0.02 1.52 16 45 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.06 3.13 5.22 -2.39 -0.01 3.11 16 47 H 0.28 14.81 3.31 -92.71 -0.31 14.50 16 Total: -1.00 -72.67 368.36 2.89 -69.79 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.80 Total: 19.66 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 7.65 Total: 8.00 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -6.05 Total: -117.39 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -1.57 Total: -28.29 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.05 Total: 48.23 kcal Total: -72.67 2.89 -69.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600919741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.527 kcal (2) G-P(sol) polarization free energy of solvation -72.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds