Wall clock time and date at job start Tue Mar 31 2020 21:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36458 * 127.14079 * 2 1 4 4 N 1.38571 * 126.46730 * 359.97438 * 3 2 1 5 5 C 1.47017 * 111.00340 * 303.63246 * 4 3 2 6 6 C 1.53099 * 109.26060 * 177.61126 * 5 4 3 7 7 O 1.43017 * 109.25904 * 56.84696 * 6 5 4 8 8 C 1.43020 * 113.77797 * 301.35707 * 7 6 5 9 9 H 1.09003 * 109.46796 * 298.69391 * 8 7 6 10 10 C 1.52994 * 109.54868 * 178.55922 * 8 7 6 11 11 C 1.50696 * 109.47339 * 65.19220 * 10 8 7 12 12 O 1.20831 * 120.00050 * 0.02562 * 11 10 8 13 13 O 1.34230 * 120.00274 * 180.02562 * 11 10 8 14 14 C 1.47012 * 110.99924 * 179.97438 * 4 3 2 15 15 N 1.31215 * 107.05365 * 180.24092 * 3 2 1 16 16 N 1.28525 * 109.86438 * 359.56460 * 15 3 2 17 17 C 1.30295 * 110.05052 * 0.44999 * 16 15 3 18 18 C 1.50709 * 126.34849 * 179.76743 * 17 16 15 19 19 C 1.52994 * 109.46941 * 238.39488 * 18 17 16 20 20 C 1.52999 * 109.46528 * 358.39239 * 18 17 16 21 21 C 1.50694 * 109.47272 * 118.39032 * 18 17 16 22 22 H 1.08002 * 119.99885 * 0.02562 * 21 18 17 23 23 C 1.37870 * 119.99934 * 180.02562 * 21 18 17 24 24 N 1.31514 * 120.00016 * 0.02562 * 23 21 18 25 25 Si 1.86807 * 120.00229 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.47057 * 89.99712 * 25 23 21 27 27 H 1.48499 * 109.47387 * 209.99857 * 25 23 21 28 28 H 1.48501 * 109.46879 * 330.00033 * 25 23 21 29 29 H 1.09004 * 109.47434 * 89.91110 * 1 2 3 30 30 H 1.09002 * 109.47196 * 209.91174 * 1 2 3 31 31 H 1.09003 * 109.47178 * 329.90729 * 1 2 3 32 32 H 1.08998 * 109.50295 * 297.54606 * 5 4 3 33 33 H 1.09002 * 109.50501 * 57.67377 * 5 4 3 34 34 H 1.09000 * 109.50940 * 176.78706 * 6 5 4 35 35 H 1.09007 * 109.50450 * 296.91768 * 6 5 4 36 36 H 1.08996 * 109.47571 * 185.19567 * 10 8 7 37 37 H 1.09004 * 109.47155 * 305.19644 * 10 8 7 38 38 H 0.96706 * 116.99915 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.50550 * 302.32738 * 14 4 3 40 40 H 1.09001 * 109.50745 * 62.41199 * 14 4 3 41 41 H 1.09001 * 109.47451 * 53.91263 * 19 18 17 42 42 H 1.09001 * 109.47090 * 173.91057 * 19 18 17 43 43 H 1.08998 * 109.47176 * 293.90529 * 19 18 17 44 44 H 1.09001 * 109.47583 * 60.00624 * 20 18 17 45 45 H 1.09003 * 109.46729 * 180.02562 * 20 18 17 46 46 H 1.09000 * 109.47509 * 300.00184 * 20 18 17 47 47 H 0.97007 * 120.00324 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2888 1.0878 0.0000 4 7 1.8978 2.4172 -0.0005 5 6 1.0202 2.7079 -1.1436 6 6 0.5650 4.1679 -1.0724 7 8 1.7138 5.0192 -1.0416 8 6 2.5911 4.7642 0.0589 9 1 2.0592 4.9356 0.9947 10 6 3.7990 5.6997 -0.0220 11 6 3.3438 7.1248 0.1594 12 8 2.1733 7.3673 0.3358 13 8 4.2386 8.1247 0.1251 14 6 3.0658 3.3099 0.0003 15 7 3.5212 0.6371 -0.0053 16 7 3.5162 -0.6481 0.0007 17 6 2.2905 -1.0901 0.0004 18 6 1.8620 -2.5350 0.0013 19 6 0.9929 -2.8099 -1.2274 20 6 3.0995 -3.4338 -0.0378 21 6 1.0709 -2.8235 1.2510 22 1 0.8955 -2.0390 1.9723 23 6 0.5710 -4.0890 1.4736 24 7 0.7850 -5.0444 0.5956 25 14 -0.4103 -4.4466 3.0224 26 1 -1.8507 -4.1924 2.7655 27 1 -0.2202 -5.8668 3.4122 28 1 0.0597 -3.5646 4.1209 29 1 -0.3634 0.0016 -1.0277 30 1 -0.3634 -0.8908 0.5125 31 1 -0.3634 0.8892 0.5153 32 1 1.5656 2.5415 -2.0726 33 1 0.1495 2.0530 -1.1097 34 1 -0.0394 4.4039 -1.9482 35 1 -0.0259 4.3213 -0.1694 36 1 4.5106 5.4430 0.7627 37 1 4.2773 5.5923 -0.9956 38 1 3.8991 9.0220 0.2467 39 1 3.6879 3.0945 0.8690 40 1 3.6447 3.1528 -0.9099 41 1 1.5258 -2.4996 -2.1262 42 1 0.7726 -3.8759 -1.2854 43 1 0.0611 -2.2503 -1.1459 44 1 3.7187 -3.2380 0.8376 45 1 2.7896 -4.4789 -0.0375 46 1 3.6718 -3.2251 -0.9416 47 1 0.4330 -5.9347 0.7520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600919742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:42 Heat of formation + Delta-G solvation = -43.586140 kcal Electronic energy + Delta-G solvation = -30653.048395 eV Core-core repulsion = 26451.967234 eV Total energy + Delta-G solvation = -4201.081160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.35236 -40.66475 -39.57828 -36.49662 -36.10315 -35.57481 -34.08367 -33.28032 -31.47872 -29.73737 -28.32111 -27.26155 -26.22621 -25.65487 -25.34935 -24.03116 -22.03665 -21.89321 -20.77368 -20.27081 -19.03762 -18.29749 -17.14322 -17.01518 -16.83538 -16.52601 -15.80979 -15.71210 -15.65115 -15.17029 -15.02019 -14.74085 -14.48908 -14.24345 -13.46149 -13.19402 -13.12504 -12.96234 -12.65009 -12.60115 -12.36383 -11.85486 -11.75102 -11.61909 -11.51977 -11.45698 -11.14802 -10.99732 -10.95322 -10.83953 -10.79172 -10.58466 -10.36809 -10.31219 -9.99128 -9.88045 -9.72105 -9.50978 -9.23586 -8.96358 -8.53159 -7.69847 -6.17765 -4.29852 1.97777 2.39885 2.59378 2.88360 3.17284 3.26554 3.30004 3.38747 3.58825 3.85642 4.26849 4.41397 4.49676 4.64519 4.79640 4.85687 4.98779 5.03962 5.07572 5.19184 5.21493 5.28317 5.40091 5.46100 5.47982 5.52360 5.62103 5.72675 5.83661 5.98495 6.05142 6.22520 6.42795 6.57087 6.70249 6.76544 6.79254 6.88630 7.00062 7.15741 7.26361 7.47468 7.52362 7.63166 7.71240 7.85940 8.00028 8.17098 8.67449 9.36206 9.53011 10.83572 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022791 B = 0.002632 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.255960 B =10636.297135 C =10873.226720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.474 5.474 3 C 0.314 3.686 4 N -0.444 5.444 5 C 0.010 3.990 6 C 0.072 3.928 7 O -0.372 6.372 8 C 0.104 3.896 9 H 0.080 0.920 10 C -0.106 4.106 11 C 0.481 3.519 12 O -0.503 6.503 13 O -0.521 6.521 14 C 0.045 3.955 15 N -0.327 5.327 16 N -0.311 5.311 17 C 0.250 3.750 18 C 0.145 3.855 19 C -0.130 4.130 20 C -0.117 4.117 21 C -0.515 4.515 22 H 0.055 0.945 23 C 0.074 3.926 24 N -0.878 5.878 25 Si 0.895 3.105 26 H -0.280 1.280 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.410 0.590 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.011 0.989 42 H 0.093 0.907 43 H 0.030 0.970 44 H 0.036 0.964 45 H 0.088 0.912 46 H 0.017 0.983 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 19.226 -3.557 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.168 5.168 3 C -0.043 4.043 4 N -0.168 5.168 5 C -0.118 4.118 6 C -0.005 4.005 7 O -0.291 6.291 8 C 0.045 3.955 9 H 0.098 0.902 10 C -0.144 4.144 11 C 0.323 3.677 12 O -0.390 6.390 13 O -0.333 6.333 14 C -0.083 4.083 15 N -0.171 5.171 16 N -0.148 5.148 17 C -0.018 4.018 18 C 0.142 3.858 19 C -0.188 4.188 20 C -0.175 4.175 21 C -0.553 4.553 22 H 0.074 0.926 23 C -0.129 4.129 24 N -0.515 5.515 25 Si 0.723 3.277 26 H -0.206 1.206 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.082 0.918 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.268 0.732 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.030 0.970 42 H 0.112 0.888 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.107 0.893 46 H 0.037 0.963 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.092 18.944 -3.309 19.262 hybrid contribution -1.948 0.112 0.527 2.021 sum -0.856 19.056 -2.783 19.277 Atomic orbital electron populations 1.22201 0.76120 1.05741 1.02823 1.45940 1.08455 1.05547 1.56851 1.22283 0.87859 0.86446 1.07679 1.58775 1.18706 0.98120 1.41234 1.23114 0.97948 0.99027 0.91719 1.22620 0.87846 0.86911 1.03102 1.87996 1.35027 1.58534 1.47557 1.21939 0.90113 0.91748 0.91682 0.90197 1.21326 0.98908 0.87029 1.07155 1.23231 0.83837 0.88252 0.72391 1.90754 1.19033 1.84899 1.44279 1.84530 1.43899 1.19955 1.84900 1.22621 0.90931 0.90145 1.04565 1.74402 1.15366 1.04853 1.22519 1.73976 1.18208 1.01242 1.21413 1.26097 0.85157 0.92730 0.97807 1.16930 0.94273 0.78893 0.95717 1.21892 0.97481 1.04679 0.94768 1.21618 0.95356 1.02457 0.98089 1.20858 1.33933 0.96177 1.04370 0.92641 1.24840 0.95766 0.95812 0.96521 1.69812 1.44631 1.02421 1.34682 0.86536 0.80080 0.77846 0.83280 1.20565 1.20918 1.19887 0.91399 0.86692 0.90363 0.92680 0.88878 0.87753 0.91756 0.85624 0.86443 0.73154 0.87961 0.91785 0.96954 0.88793 0.95044 0.94521 0.89296 0.96345 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 7.90 59.84 0.47 1.62 16 2 N -0.47 -9.19 3.21 -121.46 -0.39 -9.58 16 3 C 0.31 5.87 7.22 -318.88 -2.30 3.57 16 4 N -0.44 -6.48 4.77 -174.21 -0.83 -7.31 16 5 C 0.01 0.12 5.46 -3.71 -0.02 0.10 16 6 C 0.07 0.74 7.01 37.21 0.26 1.00 16 7 O -0.37 -4.39 9.72 -49.38 -0.48 -4.87 16 8 C 0.10 1.09 2.35 -26.68 -0.06 1.03 16 9 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 10 C -0.11 -0.84 5.53 -27.89 -0.15 -0.99 16 11 C 0.48 4.46 8.21 36.00 0.30 4.76 16 12 O -0.50 -6.39 16.19 -23.99 -0.39 -6.77 16 13 O -0.52 -3.54 13.42 -39.26 -0.53 -4.07 16 14 C 0.05 0.56 4.30 -3.71 -0.02 0.55 16 15 N -0.33 -7.02 11.31 30.31 0.34 -6.68 16 16 N -0.31 -7.40 11.50 32.99 0.38 -7.02 16 17 C 0.25 5.67 6.28 -154.01 -0.97 4.71 16 18 C 0.14 3.41 0.52 -156.81 -0.08 3.33 16 19 C -0.13 -2.85 7.96 37.15 0.30 -2.55 16 20 C -0.12 -2.83 7.75 37.16 0.29 -2.54 16 21 C -0.51 -12.81 6.51 -34.45 -0.22 -13.03 16 22 H 0.06 1.42 7.53 -52.49 -0.40 1.02 16 23 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 24 N -0.88 -22.24 9.42 55.43 0.52 -21.71 16 25 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.07 0.90 7.70 -51.93 -0.40 0.50 16 30 H 0.11 1.98 5.96 -51.93 -0.31 1.67 16 31 H 0.08 1.02 7.64 -51.93 -0.40 0.62 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.04 5.37 -51.93 -0.28 0.76 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.13 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.41 1.17 9.10 45.56 0.41 1.59 16 39 H 0.10 1.30 8.05 -51.93 -0.42 0.88 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.09 2.22 6.26 -51.93 -0.33 1.90 16 43 H 0.03 0.63 6.30 -51.93 -0.33 0.30 16 44 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -32.48 372.06 -9.19 -41.67 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.10 Total: 2.82 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -2.31 Total: 3.27 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.02 Total: -52.30 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -1.40 Total: -15.72 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.48 -9.19 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600919742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.913 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds