Wall clock time and date at job start Tue Mar 31 2020 21:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36458 * 127.14079 * 2 1 4 4 N 1.38571 * 126.46730 * 359.97438 * 3 2 1 5 5 C 1.47017 * 111.00340 * 303.63246 * 4 3 2 6 6 C 1.53099 * 109.26060 * 177.61126 * 5 4 3 7 7 O 1.43017 * 109.25904 * 56.84696 * 6 5 4 8 8 C 1.43020 * 113.77797 * 301.35707 * 7 6 5 9 9 H 1.09003 * 109.46796 * 298.69391 * 8 7 6 10 10 C 1.52994 * 109.54868 * 178.55922 * 8 7 6 11 11 C 1.50696 * 109.47339 * 65.19220 * 10 8 7 12 12 O 1.20831 * 120.00050 * 0.02562 * 11 10 8 13 13 O 1.34230 * 120.00274 * 180.02562 * 11 10 8 14 14 C 1.47012 * 110.99924 * 179.97438 * 4 3 2 15 15 N 1.31215 * 107.05365 * 180.24092 * 3 2 1 16 16 N 1.28525 * 109.86438 * 359.56460 * 15 3 2 17 17 C 1.30295 * 110.05052 * 0.44999 * 16 15 3 18 18 C 1.50709 * 126.34849 * 179.76743 * 17 16 15 19 19 C 1.52994 * 109.46941 * 238.39488 * 18 17 16 20 20 C 1.52999 * 109.46528 * 358.39239 * 18 17 16 21 21 C 1.50694 * 109.47272 * 118.39032 * 18 17 16 22 22 H 1.08002 * 119.99885 * 0.02562 * 21 18 17 23 23 C 1.37870 * 119.99934 * 180.02562 * 21 18 17 24 24 N 1.31514 * 120.00016 * 0.02562 * 23 21 18 25 25 Si 1.86807 * 120.00229 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.47057 * 89.99712 * 25 23 21 27 27 H 1.48499 * 109.47387 * 209.99857 * 25 23 21 28 28 H 1.48501 * 109.46879 * 330.00033 * 25 23 21 29 29 H 1.09004 * 109.47434 * 89.91110 * 1 2 3 30 30 H 1.09002 * 109.47196 * 209.91174 * 1 2 3 31 31 H 1.09003 * 109.47178 * 329.90729 * 1 2 3 32 32 H 1.08998 * 109.50295 * 297.54606 * 5 4 3 33 33 H 1.09002 * 109.50501 * 57.67377 * 5 4 3 34 34 H 1.09000 * 109.50940 * 176.78706 * 6 5 4 35 35 H 1.09007 * 109.50450 * 296.91768 * 6 5 4 36 36 H 1.08996 * 109.47571 * 185.19567 * 10 8 7 37 37 H 1.09004 * 109.47155 * 305.19644 * 10 8 7 38 38 H 0.96706 * 116.99915 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.50550 * 302.32738 * 14 4 3 40 40 H 1.09001 * 109.50745 * 62.41199 * 14 4 3 41 41 H 1.09001 * 109.47451 * 53.91263 * 19 18 17 42 42 H 1.09001 * 109.47090 * 173.91057 * 19 18 17 43 43 H 1.08998 * 109.47176 * 293.90529 * 19 18 17 44 44 H 1.09001 * 109.47583 * 60.00624 * 20 18 17 45 45 H 1.09003 * 109.46729 * 180.02562 * 20 18 17 46 46 H 1.09000 * 109.47509 * 300.00184 * 20 18 17 47 47 H 0.97007 * 120.00324 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2888 1.0878 0.0000 4 7 1.8978 2.4172 -0.0005 5 6 1.0202 2.7079 -1.1436 6 6 0.5650 4.1679 -1.0724 7 8 1.7138 5.0192 -1.0416 8 6 2.5911 4.7642 0.0589 9 1 2.0592 4.9356 0.9947 10 6 3.7990 5.6997 -0.0220 11 6 3.3438 7.1248 0.1594 12 8 2.1733 7.3673 0.3358 13 8 4.2386 8.1247 0.1251 14 6 3.0658 3.3099 0.0003 15 7 3.5212 0.6371 -0.0053 16 7 3.5162 -0.6481 0.0007 17 6 2.2905 -1.0901 0.0004 18 6 1.8620 -2.5350 0.0013 19 6 0.9929 -2.8099 -1.2274 20 6 3.0995 -3.4338 -0.0378 21 6 1.0709 -2.8235 1.2510 22 1 0.8955 -2.0390 1.9723 23 6 0.5710 -4.0890 1.4736 24 7 0.7850 -5.0444 0.5956 25 14 -0.4103 -4.4466 3.0224 26 1 -1.8507 -4.1924 2.7655 27 1 -0.2202 -5.8668 3.4122 28 1 0.0597 -3.5646 4.1209 29 1 -0.3634 0.0016 -1.0277 30 1 -0.3634 -0.8908 0.5125 31 1 -0.3634 0.8892 0.5153 32 1 1.5656 2.5415 -2.0726 33 1 0.1495 2.0530 -1.1097 34 1 -0.0394 4.4039 -1.9482 35 1 -0.0259 4.3213 -0.1694 36 1 4.5106 5.4430 0.7627 37 1 4.2773 5.5923 -0.9956 38 1 3.8991 9.0220 0.2467 39 1 3.6879 3.0945 0.8690 40 1 3.6447 3.1528 -0.9099 41 1 1.5258 -2.4996 -2.1262 42 1 0.7726 -3.8759 -1.2854 43 1 0.0611 -2.2503 -1.1459 44 1 3.7187 -3.2380 0.8376 45 1 2.7896 -4.4789 -0.0375 46 1 3.6718 -3.2251 -0.9416 47 1 0.4330 -5.9347 0.7520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600919742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:41 Heat of formation + Delta-G solvation = -63.690852 kcal Electronic energy + Delta-G solvation = -30653.920200 eV Core-core repulsion = 26451.967234 eV Total energy + Delta-G solvation = -4201.952966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.90112 -41.44022 -40.48548 -37.73772 -37.17885 -36.82868 -35.53068 -34.12415 -33.32228 -30.84226 -29.55828 -28.61043 -27.65903 -27.30516 -27.18050 -24.97507 -23.52058 -22.98303 -21.67627 -21.49313 -20.69609 -18.99080 -18.57909 -18.09399 -17.81427 -17.57896 -17.20568 -17.06925 -16.78945 -16.46027 -16.11980 -15.91657 -15.49456 -15.38018 -15.06373 -14.76183 -14.19114 -13.96196 -13.88571 -13.57614 -13.38636 -13.31168 -13.24412 -12.95028 -12.78577 -12.65348 -12.58680 -12.44702 -12.40178 -12.33195 -12.24591 -11.93149 -11.83040 -11.68748 -11.59526 -11.43247 -11.12546 -10.96547 -10.78687 -10.48926 -10.41393 -9.20783 -8.07315 -6.24732 0.93623 1.29428 1.33601 1.43182 1.48215 1.55132 1.95957 2.11462 2.43899 2.57790 2.66136 3.16734 3.54719 3.63999 3.70154 3.81820 3.91551 3.97280 4.05484 4.14659 4.26519 4.32799 4.39932 4.42950 4.51257 4.59690 4.64055 4.67169 4.72484 4.74998 4.81530 4.90573 4.96162 4.97737 5.12353 5.17959 5.35665 5.47254 5.53474 5.58538 5.67804 5.68965 5.97405 6.05151 6.06392 6.25893 6.28725 6.74153 7.06029 7.43088 7.91476 8.92893 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022791 B = 0.002632 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.255960 B =10636.297135 C =10873.226720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.475 5.475 3 C 0.334 3.666 4 N -0.444 5.444 5 C 0.011 3.989 6 C 0.075 3.925 7 O -0.384 6.384 8 C 0.112 3.888 9 H 0.073 0.927 10 C -0.105 4.105 11 C 0.488 3.512 12 O -0.543 6.543 13 O -0.514 6.514 14 C 0.047 3.953 15 N -0.356 5.356 16 N -0.343 5.343 17 C 0.230 3.770 18 C 0.142 3.858 19 C -0.117 4.117 20 C -0.106 4.106 21 C -0.522 4.522 22 H 0.043 0.957 23 C 0.039 3.961 24 N -0.895 5.895 25 Si 0.949 3.051 26 H -0.268 1.268 27 H -0.285 1.285 28 H -0.282 1.282 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.130 0.870 35 H 0.068 0.932 36 H 0.151 0.849 37 H 0.131 0.869 38 H 0.427 0.573 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.017 0.983 42 H 0.075 0.925 43 H 0.045 0.955 44 H 0.018 0.982 45 H 0.075 0.925 46 H 0.020 0.980 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 21.149 -3.753 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.168 5.168 3 C -0.023 4.023 4 N -0.169 5.169 5 C -0.116 4.116 6 C -0.002 4.002 7 O -0.303 6.303 8 C 0.053 3.947 9 H 0.091 0.909 10 C -0.143 4.143 11 C 0.331 3.669 12 O -0.433 6.433 13 O -0.328 6.328 14 C -0.080 4.080 15 N -0.201 5.201 16 N -0.180 5.180 17 C -0.040 4.040 18 C 0.139 3.861 19 C -0.176 4.176 20 C -0.165 4.165 21 C -0.560 4.560 22 H 0.062 0.938 23 C -0.162 4.162 24 N -0.532 5.532 25 Si 0.775 3.225 26 H -0.194 1.194 27 H -0.210 1.210 28 H -0.207 1.207 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.123 0.877 34 H 0.148 0.852 35 H 0.087 0.913 36 H 0.168 0.832 37 H 0.149 0.851 38 H 0.289 0.711 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.094 0.906 46 H 0.040 0.960 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.004 20.903 -3.517 21.196 hybrid contribution -1.580 -0.353 0.591 1.724 sum -1.576 20.549 -2.926 20.816 Atomic orbital electron populations 1.22436 0.73929 1.06181 1.04682 1.46056 1.09694 1.04782 1.56285 1.22693 0.87088 0.87828 1.04734 1.58941 1.19559 0.96064 1.42333 1.23239 0.97539 1.00668 0.90150 1.22762 0.87612 0.85269 1.04559 1.87999 1.35549 1.58852 1.47922 1.21890 0.90839 0.90786 0.91174 0.90889 1.21390 0.98135 0.85895 1.08866 1.23364 0.83329 0.88962 0.71232 1.90745 1.20622 1.85534 1.46369 1.84492 1.43243 1.20883 1.84209 1.22684 0.90312 0.90938 1.04097 1.74307 1.17025 1.04001 1.24721 1.73871 1.19297 1.02590 1.22272 1.25783 0.85643 0.93100 0.99452 1.16841 0.93721 0.79596 0.95897 1.21721 0.97925 1.03614 0.94308 1.21480 0.95703 1.01932 0.97342 1.20907 1.34300 0.96086 1.04727 0.93828 1.25395 0.96528 0.95650 0.98671 1.69903 1.45054 1.02574 1.35698 0.85701 0.79443 0.77152 0.80171 1.19355 1.21036 1.20716 0.88812 0.88462 0.87681 0.93394 0.87729 0.85232 0.91337 0.83163 0.85122 0.71112 0.88412 0.92293 0.96419 0.90583 0.93555 0.96257 0.90599 0.96048 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.00 7.90 127.77 1.01 3.01 16 2 N -0.47 -17.94 3.21 -538.18 -1.73 -19.66 16 3 C 0.33 12.18 7.22 260.11 1.88 14.06 16 4 N -0.44 -12.22 4.77 -705.06 -3.36 -15.58 16 5 C 0.01 0.24 5.46 86.31 0.47 0.71 16 6 C 0.07 1.32 7.01 72.02 0.50 1.83 16 7 O -0.38 -8.22 9.72 -135.45 -1.32 -9.54 16 8 C 0.11 2.16 2.35 30.62 0.07 2.23 16 9 H 0.07 1.53 7.95 -2.39 -0.02 1.51 16 10 C -0.11 -1.43 5.53 29.84 0.16 -1.27 16 11 C 0.49 8.07 8.21 71.23 0.58 8.66 16 12 O -0.54 -13.03 16.19 26.95 0.44 -12.59 16 13 O -0.51 -5.78 13.42 -51.42 -0.69 -6.47 16 14 C 0.05 1.11 4.30 86.31 0.37 1.48 16 15 N -0.36 -15.33 11.31 -58.01 -0.66 -15.99 16 16 N -0.34 -16.56 11.50 -49.53 -0.57 -17.12 16 17 C 0.23 10.47 6.28 137.64 0.86 11.33 16 18 C 0.14 6.76 0.52 -53.68 -0.03 6.73 16 19 C -0.12 -5.11 7.96 71.98 0.57 -4.54 16 20 C -0.11 -5.26 7.75 71.98 0.56 -4.71 16 21 C -0.52 -26.08 6.51 25.60 0.17 -25.91 16 22 H 0.04 2.24 7.53 -2.91 -0.02 2.22 16 23 C 0.04 1.93 5.15 84.65 0.44 2.37 16 24 N -0.89 -45.43 9.42 21.44 0.20 -45.23 16 25 Si 0.95 40.12 29.54 68.60 2.03 42.15 16 26 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 27 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 28 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 29 H 0.09 2.21 7.70 -2.39 -0.02 2.19 16 30 H 0.10 3.23 5.96 -2.39 -0.01 3.22 16 31 H 0.10 2.43 7.64 -2.39 -0.02 2.42 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.10 2.00 5.37 -2.39 -0.01 1.99 16 34 H 0.13 1.65 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.43 1.49 9.10 -74.05 -0.67 0.81 16 39 H 0.10 2.39 8.05 -2.39 -0.02 2.37 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 3.60 6.26 -2.39 -0.01 3.59 16 43 H 0.05 1.82 6.30 -2.39 -0.02 1.81 16 44 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.08 3.92 6.07 -2.39 -0.01 3.91 16 46 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.27 12.92 8.31 -92.70 -0.77 12.15 16 Total: -1.00 -70.39 372.06 2.30 -68.09 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.33 Total: 15.97 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 7.63 Total: 15.97 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -6.11 Total: -113.58 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -1.57 Total: -28.60 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -70.39 2.30 -68.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600919742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.398 kcal (2) G-P(sol) polarization free energy of solvation -70.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds