Wall clock time and date at job start Tue Mar 31 2020 20:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47289 * 2 1 4 4 N 1.29948 * 126.29045 * 89.96852 * 3 2 1 5 5 O 1.21297 * 110.25402 * 179.97438 * 4 3 2 6 6 C 1.33644 * 109.80913 * 0.02562 * 5 4 3 7 7 C 1.50702 * 126.54815 * 179.73250 * 6 5 4 8 8 O 1.42897 * 109.47096 * 270.02591 * 7 6 5 9 9 C 1.42905 * 113.99873 * 180.02562 * 8 7 6 10 10 C 1.50709 * 109.47083 * 179.97438 * 9 8 7 11 11 O 1.21276 * 119.99801 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99672 * 180.02562 * 10 9 8 13 13 C 1.47074 * 120.88623 * 359.71904 * 12 10 9 14 14 C 1.53695 * 108.27749 * 128.75584 * 13 12 10 15 15 N 1.46898 * 109.25710 * 54.08520 * 14 13 12 16 16 C 1.46897 * 111.00374 * 172.60625 * 15 14 13 17 17 C 1.50696 * 109.47181 * 294.30164 * 16 15 14 18 18 H 1.07999 * 120.00088 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00120 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99985 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00341 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46993 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47416 * 119.99837 * 21 19 17 24 24 H 1.48501 * 109.47250 * 240.00431 * 21 19 17 25 25 C 1.46903 * 111.26978 * 296.75965 * 15 14 13 26 26 C 1.47086 * 120.87915 * 180.02562 * 12 10 9 27 27 N 1.31126 * 106.89983 * 0.02562 * 6 5 4 28 28 H 1.08999 * 109.47385 * 300.00564 * 1 2 3 29 29 H 1.09003 * 109.46804 * 60.00280 * 1 2 3 30 30 H 1.09004 * 109.47260 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47385 * 239.99436 * 2 1 3 32 32 H 1.09003 * 109.46804 * 119.99720 * 2 1 3 33 33 H 1.08999 * 109.47336 * 30.02546 * 7 6 5 34 34 H 1.09003 * 109.47254 * 150.02825 * 7 6 5 35 35 H 1.08996 * 109.47158 * 300.00020 * 9 8 7 36 36 H 1.09000 * 109.47178 * 60.00755 * 9 8 7 37 37 H 1.09000 * 109.63281 * 248.52921 * 13 12 10 38 38 H 1.09007 * 109.62783 * 9.10567 * 13 12 10 39 39 H 1.09002 * 109.65044 * 294.08756 * 14 13 12 40 40 H 1.09000 * 109.42571 * 173.95183 * 14 13 12 41 41 H 1.09004 * 109.46998 * 54.30340 * 16 15 14 42 42 H 1.09007 * 109.47226 * 174.30190 * 16 15 14 43 43 H 0.96994 * 120.00296 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.48967 * 303.14478 * 25 15 14 45 45 H 1.09002 * 109.49737 * 183.06039 * 25 15 14 46 46 H 1.09002 * 109.62666 * 350.89249 * 26 12 10 47 47 H 1.09000 * 109.63114 * 111.47298 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2882 2.1461 1.0474 5 8 2.6775 3.2449 0.7123 6 6 2.7073 3.3276 -0.6212 7 6 3.1253 4.5238 -1.4370 8 8 1.9854 5.3460 -1.6953 9 6 2.2739 6.5137 -2.4670 10 6 1.0068 7.3018 -2.6784 11 8 -0.0399 6.9031 -2.2134 12 7 1.0371 8.4497 -3.3840 13 6 2.2968 8.9543 -3.9512 14 6 2.0681 9.2556 -5.4408 15 7 0.9184 10.1592 -5.5814 16 6 0.7718 10.6125 -6.9710 17 6 1.9555 11.4651 -7.3488 18 1 2.7387 11.6513 -6.6288 19 6 2.0392 12.0066 -8.6140 20 7 1.0863 11.7786 -9.4913 21 14 3.5068 13.0629 -9.0827 22 1 4.4324 13.1655 -7.9259 23 1 4.2159 12.4437 -10.2312 24 1 3.0387 14.4199 -9.4632 25 6 -0.3176 9.5277 -5.1004 26 6 -0.1877 9.2346 -3.6016 27 7 2.2974 2.1713 -1.0841 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8697 5.0978 -0.8853 34 1 3.5525 4.1879 -2.3819 35 1 3.0009 7.1290 -1.9371 36 1 2.6831 6.2186 -3.4333 37 1 2.5935 9.8653 -3.4315 38 1 3.0751 8.1985 -3.8444 39 1 1.8686 8.3274 -5.9762 40 1 2.9571 9.7311 -5.8551 41 1 0.7214 9.7472 -7.6320 42 1 -0.1430 11.1973 -7.0678 43 1 1.1450 12.1599 -10.3812 44 1 -0.4838 8.5956 -5.6404 45 1 -1.1588 10.2004 -5.2677 46 1 -1.0529 8.6642 -3.2636 47 1 -0.1249 10.1720 -3.0490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647481440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:29 Heat of formation + Delta-G solvation = 5.357905 kcal Electronic energy + Delta-G solvation = -28612.727251 eV Core-core repulsion = 24413.768464 eV Total energy + Delta-G solvation = -4198.958787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.96668 -40.19476 -38.45118 -37.33406 -36.72903 -34.49922 -34.24977 -32.52900 -32.08078 -31.11233 -29.39164 -28.26873 -27.01492 -25.48911 -25.29417 -23.58631 -23.32793 -22.12662 -21.55869 -20.74909 -18.92880 -18.56124 -18.02952 -17.41333 -16.82139 -16.70956 -16.41830 -15.97519 -15.44911 -15.21426 -14.88985 -14.76572 -14.50156 -14.44911 -13.99590 -13.69533 -13.63116 -13.48039 -13.25954 -12.84903 -12.57603 -12.37423 -12.29715 -12.14355 -11.96492 -11.80302 -11.68068 -11.36426 -11.35455 -11.14372 -11.04535 -10.82099 -10.70657 -10.57374 -10.39384 -10.32817 -9.96126 -9.70408 -9.32704 -8.59602 -8.50749 -7.40289 -6.11404 -4.13821 0.63098 1.74407 2.22536 2.55774 2.73185 3.16085 3.24708 3.32808 3.35936 3.57235 3.74068 4.29340 4.33842 4.45696 4.51463 4.64959 4.68991 4.72748 4.75687 4.77353 4.88726 4.95154 5.15936 5.24177 5.30056 5.33395 5.36983 5.42382 5.47822 5.56084 5.60780 5.67328 5.74748 5.77006 5.94987 6.21656 6.30234 6.36378 6.40505 6.60880 7.15480 7.21607 7.40471 7.68306 7.77096 7.95063 8.05360 8.14315 8.40764 8.93551 9.51036 10.99371 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022842 B = 0.001785 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.516906 B =15686.586877 C =15985.959105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.032 4.032 3 C 0.170 3.830 4 N -0.378 5.378 5 O 0.089 5.911 6 C 0.186 3.814 7 C 0.156 3.844 8 O -0.356 6.356 9 C 0.047 3.953 10 C 0.515 3.485 11 O -0.528 6.528 12 N -0.606 5.606 13 C 0.107 3.893 14 C 0.049 3.951 15 N -0.535 5.535 16 C 0.193 3.807 17 C -0.510 4.510 18 H 0.065 0.935 19 C 0.055 3.945 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.040 3.960 26 C 0.120 3.880 27 N -0.459 5.459 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.026 0.974 40 H 0.099 0.901 41 H -0.008 1.008 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.027 0.973 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.647 -17.849 17.350 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.071 4.071 3 C -0.102 4.102 4 N -0.084 5.084 5 O 0.028 5.972 6 C -0.035 4.035 7 C 0.077 3.923 8 O -0.274 6.274 9 C -0.032 4.032 10 C 0.302 3.698 11 O -0.404 6.404 12 N -0.341 5.341 13 C -0.016 4.016 14 C -0.080 4.080 15 N -0.261 5.261 16 C 0.068 3.932 17 C -0.549 4.549 18 H 0.083 0.917 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.089 4.089 26 C -0.002 4.002 27 N -0.194 5.194 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.117 0.883 41 H 0.010 0.990 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.715 -18.238 18.275 26.246 hybrid contribution 0.903 0.222 -1.178 1.501 sum 5.618 -18.016 17.097 25.465 Atomic orbital electron populations 1.21755 0.93071 1.02934 1.02993 1.19962 0.97031 0.85365 1.04749 1.25955 1.00405 1.00579 0.83297 1.74646 1.17034 0.92872 1.23896 1.85307 1.60155 1.27155 1.24559 1.28153 0.96980 0.96225 0.82161 1.20593 0.88651 0.85573 0.97476 1.88050 1.30571 1.35142 1.73587 1.22359 0.96755 0.87128 0.96994 1.19995 0.89990 0.81009 0.78850 1.90722 1.32155 1.68413 1.49138 1.48163 1.10768 1.22448 1.52753 1.22174 0.84393 0.99488 0.95575 1.22422 0.97417 0.95271 0.92923 1.62078 1.01248 1.36361 1.26371 1.19743 0.98271 0.94617 0.80579 1.21161 1.06058 1.30436 0.97229 0.91717 1.25005 0.96523 0.96643 0.96444 1.69964 1.32974 1.45092 1.05547 0.86437 0.82436 0.80123 0.78369 1.19633 1.21128 1.20999 1.22425 0.94923 0.97883 0.93670 1.21792 0.86595 0.95105 0.96694 1.71898 1.15914 1.02157 1.29457 0.92254 0.91747 0.90896 0.88430 0.88995 0.88737 0.87880 0.89308 0.89289 0.90125 0.90393 0.95551 0.88308 0.99041 0.94955 0.92879 0.95435 0.89908 0.89309 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.03 -0.23 6.56 -27.89 -0.18 -0.42 16 3 C 0.17 1.84 7.47 -156.37 -1.17 0.68 16 4 N -0.38 -4.48 12.16 30.90 0.38 -4.10 16 5 O 0.09 0.99 11.31 18.10 0.20 1.20 16 6 C 0.19 1.92 8.14 -13.06 -0.11 1.81 16 7 C 0.16 1.12 6.56 36.01 0.24 1.36 16 8 O -0.36 -4.03 9.86 -55.14 -0.54 -4.57 16 9 C 0.05 0.44 4.78 36.01 0.17 0.61 16 10 C 0.52 7.26 7.78 -10.98 -0.09 7.18 16 11 O -0.53 -9.70 15.95 -14.35 -0.23 -9.93 16 12 N -0.61 -8.35 3.00 -172.16 -0.52 -8.87 16 13 C 0.11 1.29 6.53 -3.37 -0.02 1.27 16 14 C 0.05 0.81 5.47 -3.46 -0.02 0.79 16 15 N -0.54 -10.48 4.62 -235.44 -1.09 -11.57 16 16 C 0.19 4.72 4.72 -4.98 -0.02 4.69 16 17 C -0.51 -13.40 8.41 -34.44 -0.29 -13.69 16 18 H 0.06 1.65 7.13 -52.49 -0.37 1.28 16 19 C 0.06 1.50 5.46 -17.82 -0.10 1.40 16 20 N -0.90 -25.69 13.29 55.43 0.74 -24.96 16 21 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.04 0.69 5.62 -3.68 -0.02 0.67 16 26 C 0.12 1.78 6.60 -3.58 -0.02 1.75 16 27 N -0.46 -5.35 11.55 -9.87 -0.11 -5.47 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.54 7.99 -51.93 -0.41 0.13 16 36 H 0.09 0.64 7.67 -51.93 -0.40 0.24 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.65 6.02 -51.93 -0.31 0.34 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 1.73 6.67 -51.93 -0.35 1.38 16 41 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 42 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 1.38 7.99 -51.93 -0.41 0.96 16 46 H 0.09 1.33 7.06 -51.93 -0.37 0.97 16 47 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 391.09 15.07 5.89 5.89 Total: -1.00 -34.95 391.09 -8.81 -43.76 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -7.25 Total: -4.38 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -1.26 Total: 7.45 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.61 Total: -54.96 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.57 Total: -13.31 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.95 -8.81 -43.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647481440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.121 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds