Wall clock time and date at job start Tue Mar 31 2020 20:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47289 * 2 1 4 4 N 1.29948 * 126.29045 * 89.96852 * 3 2 1 5 5 O 1.21297 * 110.25402 * 179.97438 * 4 3 2 6 6 C 1.33644 * 109.80913 * 0.02562 * 5 4 3 7 7 C 1.50702 * 126.54815 * 179.73250 * 6 5 4 8 8 O 1.42897 * 109.47096 * 270.02591 * 7 6 5 9 9 C 1.42905 * 113.99873 * 180.02562 * 8 7 6 10 10 C 1.50709 * 109.47083 * 179.97438 * 9 8 7 11 11 O 1.21276 * 119.99801 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99672 * 180.02562 * 10 9 8 13 13 C 1.47074 * 120.88623 * 359.71904 * 12 10 9 14 14 C 1.53695 * 108.27749 * 128.75584 * 13 12 10 15 15 N 1.46898 * 109.25710 * 54.08520 * 14 13 12 16 16 C 1.46897 * 111.00374 * 172.60625 * 15 14 13 17 17 C 1.50696 * 109.47181 * 294.30164 * 16 15 14 18 18 H 1.07999 * 120.00088 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00120 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99985 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00341 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46993 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47416 * 119.99837 * 21 19 17 24 24 H 1.48501 * 109.47250 * 240.00431 * 21 19 17 25 25 C 1.46903 * 111.26978 * 296.75965 * 15 14 13 26 26 C 1.47086 * 120.87915 * 180.02562 * 12 10 9 27 27 N 1.31126 * 106.89983 * 0.02562 * 6 5 4 28 28 H 1.08999 * 109.47385 * 300.00564 * 1 2 3 29 29 H 1.09003 * 109.46804 * 60.00280 * 1 2 3 30 30 H 1.09004 * 109.47260 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47385 * 239.99436 * 2 1 3 32 32 H 1.09003 * 109.46804 * 119.99720 * 2 1 3 33 33 H 1.08999 * 109.47336 * 30.02546 * 7 6 5 34 34 H 1.09003 * 109.47254 * 150.02825 * 7 6 5 35 35 H 1.08996 * 109.47158 * 300.00020 * 9 8 7 36 36 H 1.09000 * 109.47178 * 60.00755 * 9 8 7 37 37 H 1.09000 * 109.63281 * 248.52921 * 13 12 10 38 38 H 1.09007 * 109.62783 * 9.10567 * 13 12 10 39 39 H 1.09002 * 109.65044 * 294.08756 * 14 13 12 40 40 H 1.09000 * 109.42571 * 173.95183 * 14 13 12 41 41 H 1.09004 * 109.46998 * 54.30340 * 16 15 14 42 42 H 1.09007 * 109.47226 * 174.30190 * 16 15 14 43 43 H 0.96994 * 120.00296 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.48967 * 303.14478 * 25 15 14 45 45 H 1.09002 * 109.49737 * 183.06039 * 25 15 14 46 46 H 1.09002 * 109.62666 * 350.89249 * 26 12 10 47 47 H 1.09000 * 109.63114 * 111.47298 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2882 2.1461 1.0474 5 8 2.6775 3.2449 0.7123 6 6 2.7073 3.3276 -0.6212 7 6 3.1253 4.5238 -1.4370 8 8 1.9854 5.3460 -1.6953 9 6 2.2739 6.5137 -2.4670 10 6 1.0068 7.3018 -2.6784 11 8 -0.0399 6.9031 -2.2134 12 7 1.0371 8.4497 -3.3840 13 6 2.2968 8.9543 -3.9512 14 6 2.0681 9.2556 -5.4408 15 7 0.9184 10.1592 -5.5814 16 6 0.7718 10.6125 -6.9710 17 6 1.9555 11.4651 -7.3488 18 1 2.7387 11.6513 -6.6288 19 6 2.0392 12.0066 -8.6140 20 7 1.0863 11.7786 -9.4913 21 14 3.5068 13.0629 -9.0827 22 1 4.4324 13.1655 -7.9259 23 1 4.2159 12.4437 -10.2312 24 1 3.0387 14.4199 -9.4632 25 6 -0.3176 9.5277 -5.1004 26 6 -0.1877 9.2346 -3.6016 27 7 2.2974 2.1713 -1.0841 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8697 5.0978 -0.8853 34 1 3.5525 4.1879 -2.3819 35 1 3.0009 7.1290 -1.9371 36 1 2.6831 6.2186 -3.4333 37 1 2.5935 9.8653 -3.4315 38 1 3.0751 8.1985 -3.8444 39 1 1.8686 8.3274 -5.9762 40 1 2.9571 9.7311 -5.8551 41 1 0.7214 9.7472 -7.6320 42 1 -0.1430 11.1973 -7.0678 43 1 1.1450 12.1599 -10.3812 44 1 -0.4838 8.5956 -5.6404 45 1 -1.1588 10.2004 -5.2677 46 1 -1.0529 8.6642 -3.2636 47 1 -0.1249 10.1720 -3.0490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647481440.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:28 Heat of formation + Delta-G solvation = -21.236975 kcal Electronic energy + Delta-G solvation = -28613.880491 eV Core-core repulsion = 24413.768464 eV Total energy + Delta-G solvation = -4200.112028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.74886 -41.27822 -39.39025 -38.51684 -37.46924 -35.97688 -34.94842 -34.40476 -32.78324 -32.32723 -30.43498 -29.59211 -28.02905 -26.75523 -26.16765 -24.61874 -24.28075 -23.79604 -22.24458 -22.09199 -20.04697 -19.35745 -18.86174 -18.47064 -18.29660 -17.65128 -17.43227 -16.94881 -16.56094 -16.35321 -16.05518 -15.96882 -15.63218 -15.39418 -15.27228 -15.11803 -14.60662 -14.40251 -14.10043 -14.02052 -13.81583 -13.52765 -13.22233 -13.07424 -13.01283 -12.72731 -12.70427 -12.58821 -12.53101 -12.38107 -12.35373 -12.27570 -12.07422 -12.03851 -11.75382 -11.24640 -11.17957 -10.91206 -10.79820 -10.60640 -9.78446 -9.03928 -8.18007 -6.28350 -0.12567 0.97844 1.45392 1.46941 1.51019 1.54116 1.59614 1.83600 2.43132 2.48001 2.87252 3.01050 3.15013 3.25215 3.49819 3.79124 3.97142 4.05144 4.08966 4.13199 4.17572 4.19310 4.24685 4.26196 4.30924 4.34281 4.40070 4.49371 4.56723 4.69698 4.74928 4.82607 4.86049 4.87867 4.97003 4.97695 5.05566 5.18901 5.22397 5.24537 5.41810 5.66672 5.79735 6.04538 6.24988 6.42025 6.57583 6.88510 7.00327 7.09292 7.42001 8.93550 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022842 B = 0.001785 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.516906 B =15686.586877 C =15985.959105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.034 4.034 3 C 0.164 3.836 4 N -0.402 5.402 5 O 0.079 5.921 6 C 0.186 3.814 7 C 0.153 3.847 8 O -0.395 6.395 9 C 0.051 3.949 10 C 0.508 3.492 11 O -0.581 6.581 12 N -0.608 5.608 13 C 0.117 3.883 14 C 0.044 3.956 15 N -0.538 5.538 16 C 0.206 3.794 17 C -0.517 4.517 18 H 0.074 0.926 19 C -0.002 4.002 20 N -0.938 5.938 21 Si 0.972 3.028 22 H -0.255 1.255 23 H -0.282 1.282 24 H -0.285 1.285 25 C 0.044 3.956 26 C 0.128 3.872 27 N -0.486 5.486 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.017 0.983 40 H 0.091 0.909 41 H -0.041 1.041 42 H 0.002 0.998 43 H 0.263 0.737 44 H 0.013 0.987 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.726 -18.093 18.533 27.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C -0.109 4.109 4 N -0.110 5.110 5 O 0.021 5.979 6 C -0.035 4.035 7 C 0.076 3.924 8 O -0.314 6.314 9 C -0.027 4.027 10 C 0.298 3.702 11 O -0.460 6.460 12 N -0.342 5.342 13 C -0.005 4.005 14 C -0.084 4.084 15 N -0.263 5.263 16 C 0.080 3.920 17 C -0.556 4.556 18 H 0.092 0.908 19 C -0.200 4.200 20 N -0.579 5.579 21 Si 0.796 3.204 22 H -0.178 1.178 23 H -0.208 1.208 24 H -0.211 1.211 25 C -0.085 4.085 26 C 0.005 3.995 27 N -0.222 5.222 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.136 0.864 37 H 0.111 0.889 38 H 0.147 0.853 39 H 0.035 0.965 40 H 0.109 0.891 41 H -0.023 1.023 42 H 0.020 0.980 43 H 0.071 0.929 44 H 0.032 0.968 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.832 -18.475 19.478 27.966 hybrid contribution -0.122 0.257 -1.555 1.581 sum 7.710 -18.219 17.923 26.694 Atomic orbital electron populations 1.21733 0.92943 1.04138 1.01532 1.20174 0.97019 0.83823 1.06199 1.26595 0.99651 1.01681 0.82942 1.74625 1.18288 0.93394 1.24697 1.85267 1.60407 1.27030 1.25170 1.28912 0.95661 0.96893 0.82003 1.21060 0.87955 0.84624 0.98772 1.87979 1.33062 1.36157 1.74179 1.22496 0.94317 0.86843 0.99060 1.20948 0.91191 0.80597 0.77500 1.90702 1.34601 1.69504 1.51242 1.48258 1.10761 1.22515 1.52705 1.22269 0.84661 1.01809 0.91741 1.22533 0.95500 0.93919 0.96486 1.62012 1.03243 1.38178 1.22851 1.19394 0.96657 0.92948 0.83003 1.21497 1.06437 1.30137 0.97493 0.90803 1.25964 0.99462 0.98046 0.96484 1.70110 1.35242 1.46506 1.06018 0.85295 0.78872 0.77783 0.78417 1.17842 1.20786 1.21092 1.22424 0.93955 0.96847 0.95320 1.21584 0.87641 0.95803 0.94429 1.71917 1.17015 1.03115 1.30113 0.93402 0.93426 0.88362 0.87074 0.87388 0.84582 0.85440 0.84855 0.86357 0.88877 0.85301 0.96498 0.89120 1.02328 0.98006 0.92851 0.96850 0.90349 0.89849 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.89 71.98 0.71 -1.21 16 2 C -0.03 -0.45 6.56 29.85 0.20 -0.26 16 3 C 0.16 3.48 7.47 138.46 1.03 4.51 16 4 N -0.40 -9.40 12.16 -60.32 -0.73 -10.13 16 5 O 0.08 1.71 11.31 74.83 0.85 2.56 16 6 C 0.19 3.57 8.14 88.38 0.72 4.29 16 7 C 0.15 1.67 6.56 71.24 0.47 2.14 16 8 O -0.40 -7.81 9.86 -129.94 -1.28 -9.09 16 9 C 0.05 0.74 4.78 71.24 0.34 1.08 16 10 C 0.51 13.20 7.78 87.66 0.68 13.89 16 11 O -0.58 -21.15 15.95 16.02 0.26 -20.90 16 12 N -0.61 -15.38 3.00 -816.97 -2.45 -17.83 16 13 C 0.12 2.40 6.53 86.50 0.57 2.96 16 14 C 0.04 1.40 5.47 86.54 0.47 1.88 16 15 N -0.54 -21.18 4.62 -898.81 -4.15 -25.33 16 16 C 0.21 10.47 4.72 85.56 0.40 10.87 16 17 C -0.52 -27.31 8.41 25.60 0.22 -27.09 16 18 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 19 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 20 N -0.94 -55.02 13.29 21.45 0.28 -54.74 16 21 Si 0.97 41.84 29.54 68.60 2.03 43.87 16 22 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 C 0.04 1.53 5.62 86.39 0.49 2.01 16 26 C 0.13 3.73 6.60 86.36 0.57 4.30 16 27 N -0.49 -10.96 11.55 -303.20 -3.50 -14.46 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.13 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.13 0.76 7.99 -2.39 -0.02 0.74 16 36 H 0.12 1.04 7.67 -2.39 -0.02 1.02 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.13 1.37 6.02 -2.38 -0.01 1.36 16 39 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.09 3.02 6.67 -2.39 -0.02 3.01 16 41 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 42 H 0.00 0.10 7.97 -2.38 -0.02 0.08 16 43 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.08 2.74 7.99 -2.39 -0.02 2.73 16 46 H 0.08 2.54 7.06 -2.39 -0.02 2.52 16 47 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -81.03 391.09 -0.41 -81.43 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 0.97 Total: 4.89 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: 7.33 Total: 19.73 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -10.56 Total: -122.50 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.18 Total: -27.43 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -81.03 -0.41 -81.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647481440.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.197 kcal (2) G-P(sol) polarization free energy of solvation -81.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds