Wall clock time and date at job start Tue Mar 31 2020 21:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47227 * 2 1 4 4 H 1.09000 * 109.99783 * 302.38659 * 3 2 1 5 5 C 1.54320 * 109.88124 * 181.29088 * 3 2 1 6 6 H 1.09007 * 110.72232 * 336.93444 * 5 3 2 7 7 N 1.46498 * 110.72012 * 100.02859 * 5 3 2 8 8 C 1.34783 * 120.00016 * 202.56045 * 7 5 3 9 9 O 1.21274 * 120.00067 * 0.27145 * 8 7 5 10 10 C 1.50700 * 119.99649 * 180.02562 * 8 7 5 11 11 C 1.53004 * 109.46575 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46847 * 179.97438 * 11 10 8 13 13 H 1.09000 * 110.53847 * 52.16768 * 12 11 10 14 14 N 1.47311 * 110.59745 * 289.17029 * 12 11 10 15 15 C 1.34525 * 106.62011 * 241.47189 * 14 12 11 16 16 O 1.21537 * 123.77760 * 179.97438 * 15 14 12 17 17 N 1.33799 * 112.45626 * 0.02562 * 15 14 12 18 18 C 1.34770 * 111.64284 * 359.97438 * 17 15 14 19 19 O 1.21235 * 127.15333 * 180.02562 * 18 17 15 20 20 C 1.55153 * 103.10403 * 218.48082 * 5 3 2 21 21 C 1.54911 * 101.58123 * 35.41341 * 20 5 3 22 22 N 1.47316 * 110.06214 * 63.56063 * 3 2 1 23 23 C 1.36941 * 125.61714 * 298.24751 * 22 3 2 24 24 H 1.07998 * 119.99598 * 326.21422 * 23 22 3 25 25 C 1.38813 * 120.00358 * 146.21547 * 23 22 3 26 26 N 1.31611 * 120.00372 * 162.09545 * 25 23 22 27 27 Si 1.86801 * 119.99808 * 342.09594 * 25 23 22 28 28 H 1.48498 * 109.47408 * 88.96762 * 27 25 23 29 29 H 1.48502 * 109.47005 * 208.97061 * 27 25 23 30 30 H 1.48506 * 109.47002 * 328.96702 * 27 25 23 31 31 H 1.08994 * 109.47290 * 172.17629 * 1 2 3 32 32 H 1.09000 * 109.46966 * 292.17921 * 1 2 3 33 33 H 1.09005 * 109.46876 * 52.17261 * 1 2 3 34 34 H 1.09007 * 109.46927 * 240.00246 * 2 1 3 35 35 H 1.08996 * 109.47025 * 120.00274 * 2 1 3 36 36 H 0.97006 * 120.00264 * 22.55820 * 7 5 3 37 37 H 1.09000 * 109.47159 * 299.99238 * 10 8 7 38 38 H 1.09001 * 109.47540 * 59.99867 * 10 8 7 39 39 H 1.08993 * 109.46854 * 299.99113 * 11 10 8 40 40 H 1.08993 * 109.47669 * 59.99609 * 11 10 8 41 41 H 0.97002 * 126.68956 * 61.45590 * 14 12 11 42 42 H 0.96996 * 124.17867 * 179.97438 * 17 15 14 43 43 H 1.08996 * 111.00870 * 153.49013 * 20 5 3 44 44 H 1.09005 * 111.00337 * 277.34038 * 20 5 3 45 45 H 1.09001 * 110.36495 * 81.82805 * 21 20 5 46 46 H 1.09002 * 110.36586 * 204.04404 * 21 20 5 47 47 H 0.96996 * 120.00481 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6471 1.9768 -0.8650 5 6 3.5829 1.4536 -0.0327 6 1 3.9836 0.5154 0.3513 7 7 4.0707 1.7061 -1.3908 8 6 5.3130 1.3199 -1.7433 9 8 6.0251 0.7590 -0.9377 10 6 5.8149 1.5802 -3.1402 11 6 7.2424 1.0466 -3.2767 12 6 7.7519 1.3103 -4.6952 13 1 7.6230 2.3600 -4.9589 14 7 7.0618 0.4409 -5.6637 15 6 8.0079 -0.3266 -6.2341 16 8 7.7772 -1.1626 -7.0856 17 7 9.2315 -0.0676 -5.7586 18 6 9.2062 0.9026 -4.8235 19 8 10.1503 1.3553 -4.2124 20 6 3.9462 2.6320 0.9090 21 6 2.8353 2.5253 1.9834 22 7 1.6276 2.1243 1.2390 23 6 0.3357 2.3464 1.6350 24 1 -0.4298 2.5376 0.8975 25 6 0.0099 2.3258 2.9842 26 7 -1.1137 2.8720 3.3983 27 14 1.1662 1.5228 4.2120 28 1 2.1480 2.5260 4.6966 29 1 0.3834 1.0011 5.3611 30 1 1.8864 0.4029 3.5545 31 1 -0.3633 -1.0180 -0.1399 32 1 -0.3633 0.3880 0.9516 33 1 -0.3633 0.6303 -0.8118 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.4997 2.1512 -2.0364 37 1 5.1687 1.0756 -3.8584 38 1 5.8073 2.6526 -3.3352 39 1 7.8889 1.5508 -2.5586 40 1 7.2497 -0.0257 -3.0819 41 1 6.1106 0.4248 -5.8530 42 1 10.0371 -0.5219 -6.0508 43 1 4.9322 2.4893 1.3510 44 1 3.8901 3.5847 0.3822 45 1 3.0943 1.7675 2.7228 46 1 2.6819 3.4899 2.4674 47 1 -1.3415 2.8573 4.3410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656759751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:06 Heat of formation + Delta-G solvation = -66.064013 kcal Electronic energy + Delta-G solvation = -29532.809571 eV Core-core repulsion = 25330.753697 eV Total energy + Delta-G solvation = -4202.055874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.83939 -40.01493 -39.09544 -38.15318 -36.88235 -35.06158 -34.27420 -32.75704 -32.51003 -32.11499 -29.62214 -28.28229 -27.01812 -24.68984 -23.75633 -23.10074 -22.15141 -21.86904 -20.93919 -20.40745 -19.36845 -18.87434 -17.48344 -17.31957 -17.09982 -16.97541 -16.27490 -16.16326 -16.07703 -15.59468 -15.16192 -14.84851 -14.60621 -14.54621 -14.01783 -13.63602 -13.44474 -13.21649 -13.06606 -12.78747 -12.50184 -12.42520 -12.19902 -11.89928 -11.63787 -11.46746 -11.42277 -11.10737 -10.88219 -10.88135 -10.77198 -10.70281 -10.49720 -10.30602 -10.18727 -10.06583 -9.94620 -9.84862 -9.50090 -8.89422 -8.59160 -6.94682 -6.04390 -3.45005 1.07690 1.90904 2.50884 2.55087 2.60085 3.08856 3.31971 3.43875 3.44629 3.48992 4.07351 4.24191 4.44287 4.48573 4.68417 4.77875 4.83717 4.94152 5.09151 5.12685 5.17554 5.26622 5.41607 5.52003 5.55094 5.64850 5.76779 5.86462 5.91643 6.06617 6.13909 6.21236 6.27784 6.36996 6.38729 6.51431 6.59389 6.61004 6.71514 6.72936 6.86102 6.99766 7.37001 7.50149 7.62735 7.80538 8.18327 8.26609 8.76780 9.59358 10.14280 11.10940 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024458 B = 0.002204 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.545196 B =12700.512131 C =13330.094290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.155 3.845 4 H 0.045 0.955 5 C 0.132 3.868 6 H 0.095 0.905 7 N -0.715 5.715 8 C 0.511 3.489 9 O -0.541 6.541 10 C -0.140 4.140 11 C -0.105 4.105 12 C 0.092 3.908 13 H 0.134 0.866 14 N -0.721 5.721 15 C 0.705 3.295 16 O -0.544 6.544 17 N -0.681 5.681 18 C 0.530 3.470 19 O -0.461 6.461 20 C -0.140 4.140 21 C 0.116 3.884 22 N -0.598 5.598 23 C -0.236 4.236 24 H 0.088 0.912 25 C 0.032 3.968 26 N -0.904 5.904 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.301 1.301 30 H -0.270 1.270 31 H 0.029 0.971 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.400 0.600 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.442 0.558 42 H 0.433 0.567 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.024 0.976 46 H 0.059 0.941 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.275 -1.582 -18.550 24.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.048 3.952 4 H 0.063 0.937 5 C 0.027 3.973 6 H 0.113 0.887 7 N -0.365 5.365 8 C 0.297 3.703 9 O -0.418 6.418 10 C -0.180 4.180 11 C -0.144 4.144 12 C -0.017 4.017 13 H 0.151 0.849 14 N -0.387 5.387 15 C 0.404 3.596 16 O -0.417 6.417 17 N -0.352 5.352 18 C 0.315 3.685 19 O -0.329 6.329 20 C -0.179 4.179 21 C -0.009 4.009 22 N -0.325 5.325 23 C -0.363 4.363 24 H 0.105 0.895 25 C -0.168 4.168 26 N -0.546 5.546 27 Si 0.710 3.290 28 H -0.212 1.212 29 H -0.229 1.229 30 H -0.196 1.196 31 H 0.048 0.952 32 H 0.114 0.886 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.235 0.765 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.104 0.896 41 H 0.287 0.713 42 H 0.276 0.724 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.077 0.923 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.905 -2.070 -17.871 24.686 hybrid contribution 0.194 -0.460 0.325 0.596 sum 17.099 -2.530 -17.546 24.630 Atomic orbital electron populations 1.21910 0.95135 0.98996 1.04796 1.21878 0.97464 0.97170 0.99779 1.21303 0.89477 0.92394 0.91977 0.93689 1.22134 0.95096 0.99155 0.80877 0.88747 1.46057 1.15357 1.60657 1.14461 1.20436 0.81772 0.78560 0.89535 1.90730 1.56021 1.41989 1.53071 1.21643 0.97009 1.03800 0.95570 1.21567 0.96236 1.04283 0.92292 1.22217 0.89205 0.98029 0.92270 0.84875 1.45600 1.10308 1.40312 1.42448 1.15853 0.80978 0.81476 0.81321 1.91080 1.82198 1.35278 1.33186 1.44338 1.11500 1.39034 1.40324 1.20764 0.91269 0.78476 0.78020 1.90882 1.41341 1.55446 1.45257 1.23115 0.98888 0.98117 0.97816 1.21917 0.86585 0.98588 0.93802 1.44770 1.01749 1.64388 1.21543 1.18439 0.83185 1.42667 0.92048 0.89482 1.25378 0.95673 0.98494 0.97287 1.69784 1.24505 1.44788 1.15570 0.86878 0.80251 0.80888 0.80949 1.21216 1.22917 1.19567 0.95203 0.88625 0.93979 0.94033 0.92687 0.76543 0.88762 0.88097 0.88091 0.89565 0.71293 0.72450 0.91410 0.91038 0.95837 0.92274 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.03 37.16 0.34 -2.46 16 2 C -0.12 -2.16 5.49 -26.73 -0.15 -2.31 16 3 C 0.16 2.74 3.03 -66.79 -0.20 2.53 16 4 H 0.05 0.76 7.70 -51.93 -0.40 0.36 16 5 C 0.13 2.03 2.80 -66.10 -0.18 1.85 16 6 H 0.09 1.62 7.32 -51.92 -0.38 1.24 16 7 N -0.71 -7.93 5.19 -52.03 -0.27 -8.20 16 8 C 0.51 5.50 7.83 -10.98 -0.09 5.41 16 9 O -0.54 -8.22 15.66 5.56 0.09 -8.13 16 10 C -0.14 -0.74 5.64 -27.88 -0.16 -0.89 16 11 C -0.10 -0.63 4.25 -26.73 -0.11 -0.74 16 12 C 0.09 0.38 3.65 -68.20 -0.25 0.13 16 13 H 0.13 0.22 8.14 -51.93 -0.42 -0.21 16 14 N -0.72 -3.10 6.06 -59.19 -0.36 -3.46 16 15 C 0.70 5.15 8.99 -88.01 -0.79 4.36 16 16 O -0.54 -6.13 18.04 5.33 0.10 -6.03 16 17 N -0.68 -3.99 5.70 -15.79 -0.09 -4.08 16 18 C 0.53 3.49 8.14 -10.56 -0.09 3.40 16 19 O -0.46 -4.53 18.02 5.60 0.10 -4.43 16 20 C -0.14 -2.28 6.77 -24.58 -0.17 -2.44 16 21 C 0.12 2.38 4.98 -2.53 -0.01 2.37 16 22 N -0.60 -13.12 2.73 -162.35 -0.44 -13.56 16 23 C -0.24 -6.08 7.36 -15.06 -0.11 -6.19 16 24 H 0.09 2.41 7.81 -52.49 -0.41 2.00 16 25 C 0.03 0.88 5.45 -17.43 -0.10 0.78 16 26 N -0.90 -26.51 13.97 55.49 0.78 -25.74 16 27 Si 0.88 21.86 24.71 -169.99 -4.20 17.66 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 30 H -0.27 -6.63 6.77 56.52 0.38 -6.25 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.10 2.14 5.60 -51.93 -0.29 1.85 16 33 H 0.04 0.74 8.13 -51.93 -0.42 0.31 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.40 3.36 8.34 -40.82 -0.34 3.02 16 37 H 0.09 0.29 7.68 -51.93 -0.40 -0.11 16 38 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.10 0.75 8.10 -51.93 -0.42 0.33 16 40 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 41 H 0.44 1.09 8.61 -40.82 -0.35 0.74 16 42 H 0.43 1.86 8.96 -40.82 -0.37 1.50 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.02 0.52 5.29 -51.93 -0.27 0.25 16 46 H 0.06 1.27 7.99 -51.93 -0.41 0.86 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 379.42 15.07 5.72 5.72 Total: -1.00 -35.30 379.42 -7.65 -42.95 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.00 Total: 1.49 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.07 Total: 5.80 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.39 Total: -55.03 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.28 Total: -18.59 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.20 Total: 17.66 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.30 -7.65 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656759751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.109 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds