Wall clock time and date at job start Tue Mar 31 2020 21:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47227 * 2 1 4 4 H 1.09000 * 109.99783 * 302.38659 * 3 2 1 5 5 C 1.54320 * 109.88124 * 181.29088 * 3 2 1 6 6 H 1.09007 * 110.72232 * 336.93444 * 5 3 2 7 7 N 1.46498 * 110.72012 * 100.02859 * 5 3 2 8 8 C 1.34783 * 120.00016 * 202.56045 * 7 5 3 9 9 O 1.21274 * 120.00067 * 0.27145 * 8 7 5 10 10 C 1.50700 * 119.99649 * 180.02562 * 8 7 5 11 11 C 1.53004 * 109.46575 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.46847 * 179.97438 * 11 10 8 13 13 H 1.09000 * 110.53847 * 52.16768 * 12 11 10 14 14 N 1.47311 * 110.59745 * 289.17029 * 12 11 10 15 15 C 1.34525 * 106.62011 * 241.47189 * 14 12 11 16 16 O 1.21537 * 123.77760 * 179.97438 * 15 14 12 17 17 N 1.33799 * 112.45626 * 0.02562 * 15 14 12 18 18 C 1.34770 * 111.64284 * 359.97438 * 17 15 14 19 19 O 1.21235 * 127.15333 * 180.02562 * 18 17 15 20 20 C 1.55153 * 103.10403 * 218.48082 * 5 3 2 21 21 C 1.54911 * 101.58123 * 35.41341 * 20 5 3 22 22 N 1.47316 * 110.06214 * 63.56063 * 3 2 1 23 23 C 1.36941 * 125.61714 * 298.24751 * 22 3 2 24 24 H 1.07998 * 119.99598 * 326.21422 * 23 22 3 25 25 C 1.38813 * 120.00358 * 146.21547 * 23 22 3 26 26 N 1.31611 * 120.00372 * 162.09545 * 25 23 22 27 27 Si 1.86801 * 119.99808 * 342.09594 * 25 23 22 28 28 H 1.48498 * 109.47408 * 88.96762 * 27 25 23 29 29 H 1.48502 * 109.47005 * 208.97061 * 27 25 23 30 30 H 1.48506 * 109.47002 * 328.96702 * 27 25 23 31 31 H 1.08994 * 109.47290 * 172.17629 * 1 2 3 32 32 H 1.09000 * 109.46966 * 292.17921 * 1 2 3 33 33 H 1.09005 * 109.46876 * 52.17261 * 1 2 3 34 34 H 1.09007 * 109.46927 * 240.00246 * 2 1 3 35 35 H 1.08996 * 109.47025 * 120.00274 * 2 1 3 36 36 H 0.97006 * 120.00264 * 22.55820 * 7 5 3 37 37 H 1.09000 * 109.47159 * 299.99238 * 10 8 7 38 38 H 1.09001 * 109.47540 * 59.99867 * 10 8 7 39 39 H 1.08993 * 109.46854 * 299.99113 * 11 10 8 40 40 H 1.08993 * 109.47669 * 59.99609 * 11 10 8 41 41 H 0.97002 * 126.68956 * 61.45590 * 14 12 11 42 42 H 0.96996 * 124.17867 * 179.97438 * 17 15 14 43 43 H 1.08996 * 111.00870 * 153.49013 * 20 5 3 44 44 H 1.09005 * 111.00337 * 277.34038 * 20 5 3 45 45 H 1.09001 * 110.36495 * 81.82805 * 21 20 5 46 46 H 1.09002 * 110.36586 * 204.04404 * 21 20 5 47 47 H 0.96996 * 120.00481 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6471 1.9768 -0.8650 5 6 3.5829 1.4536 -0.0327 6 1 3.9836 0.5154 0.3513 7 7 4.0707 1.7061 -1.3908 8 6 5.3130 1.3199 -1.7433 9 8 6.0251 0.7590 -0.9377 10 6 5.8149 1.5802 -3.1402 11 6 7.2424 1.0466 -3.2767 12 6 7.7519 1.3103 -4.6952 13 1 7.6230 2.3600 -4.9589 14 7 7.0618 0.4409 -5.6637 15 6 8.0079 -0.3266 -6.2341 16 8 7.7772 -1.1626 -7.0856 17 7 9.2315 -0.0676 -5.7586 18 6 9.2062 0.9026 -4.8235 19 8 10.1503 1.3553 -4.2124 20 6 3.9462 2.6320 0.9090 21 6 2.8353 2.5253 1.9834 22 7 1.6276 2.1243 1.2390 23 6 0.3357 2.3464 1.6350 24 1 -0.4298 2.5376 0.8975 25 6 0.0099 2.3258 2.9842 26 7 -1.1137 2.8720 3.3983 27 14 1.1662 1.5228 4.2120 28 1 2.1480 2.5260 4.6966 29 1 0.3834 1.0011 5.3611 30 1 1.8864 0.4029 3.5545 31 1 -0.3633 -1.0180 -0.1399 32 1 -0.3633 0.3880 0.9516 33 1 -0.3633 0.6303 -0.8118 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.4997 2.1512 -2.0364 37 1 5.1687 1.0756 -3.8584 38 1 5.8073 2.6526 -3.3352 39 1 7.8889 1.5508 -2.5586 40 1 7.2497 -0.0257 -3.0819 41 1 6.1106 0.4248 -5.8530 42 1 10.0371 -0.5219 -6.0508 43 1 4.9322 2.4893 1.3510 44 1 3.8901 3.5847 0.3822 45 1 3.0943 1.7675 2.7228 46 1 2.6819 3.4899 2.4674 47 1 -1.3415 2.8573 4.3410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656759751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:05 Heat of formation + Delta-G solvation = -96.514213 kcal Electronic energy + Delta-G solvation = -29534.129991 eV Core-core repulsion = 25330.753697 eV Total energy + Delta-G solvation = -4203.376294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.34665 -41.03864 -39.72334 -39.47599 -37.50692 -35.69383 -35.48081 -34.13956 -33.89420 -33.16203 -31.14647 -29.10919 -28.28805 -26.16325 -24.59308 -23.80485 -23.63898 -22.45199 -22.02630 -21.50842 -20.73504 -19.39461 -18.90238 -18.11895 -17.98599 -17.54946 -17.38759 -17.01670 -16.78642 -16.71042 -16.33781 -15.93223 -15.43751 -15.34292 -15.25651 -14.95301 -14.88987 -14.42939 -14.06823 -14.02581 -13.84756 -13.59858 -13.38875 -13.00272 -12.94907 -12.86910 -12.59990 -12.32045 -12.19202 -12.07400 -11.97289 -11.95364 -11.69549 -11.49134 -11.48193 -11.41041 -11.36209 -10.80344 -10.63076 -10.49135 -9.95064 -8.81393 -8.16123 -5.50352 0.54558 1.30216 1.38908 1.45800 1.47125 1.75969 1.96917 2.13460 2.28006 2.42780 2.96514 3.10356 3.32014 3.58861 3.72152 3.81973 3.90796 3.93278 4.17144 4.27333 4.29437 4.36873 4.42257 4.45319 4.53308 4.63986 4.70176 4.75488 4.90681 4.97366 4.99649 5.05458 5.07988 5.10904 5.19313 5.21239 5.23479 5.42395 5.66365 5.75802 5.84247 5.88700 5.90319 6.19712 6.40019 6.68614 6.82951 7.14437 7.38854 7.56423 8.19009 9.03755 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024458 B = 0.002204 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.545196 B =12700.512131 C =13330.094290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.154 3.846 4 H 0.064 0.936 5 C 0.147 3.853 6 H 0.077 0.923 7 N -0.705 5.705 8 C 0.508 3.492 9 O -0.589 6.589 10 C -0.128 4.128 11 C -0.101 4.101 12 C 0.107 3.893 13 H 0.175 0.825 14 N -0.701 5.701 15 C 0.704 3.296 16 O -0.587 6.587 17 N -0.676 5.676 18 C 0.529 3.471 19 O -0.497 6.497 20 C -0.125 4.125 21 C 0.109 3.891 22 N -0.614 5.614 23 C -0.202 4.202 24 H 0.065 0.935 25 C -0.023 4.023 26 N -0.952 5.952 27 Si 0.929 3.071 28 H -0.280 1.280 29 H -0.312 1.312 30 H -0.269 1.269 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.418 0.582 37 H 0.127 0.873 38 H 0.139 0.861 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.454 0.546 42 H 0.438 0.562 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.010 0.990 46 H 0.044 0.956 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.548 -1.097 -21.385 27.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C 0.048 3.952 4 H 0.082 0.918 5 C 0.040 3.960 6 H 0.095 0.905 7 N -0.357 5.357 8 C 0.297 3.703 9 O -0.469 6.469 10 C -0.167 4.167 11 C -0.140 4.140 12 C -0.002 4.002 13 H 0.192 0.808 14 N -0.367 5.367 15 C 0.403 3.597 16 O -0.463 6.463 17 N -0.346 5.346 18 C 0.316 3.684 19 O -0.368 6.368 20 C -0.165 4.165 21 C -0.016 4.016 22 N -0.340 5.340 23 C -0.331 4.331 24 H 0.082 0.918 25 C -0.218 4.218 26 N -0.598 5.598 27 Si 0.759 3.241 28 H -0.207 1.207 29 H -0.241 1.241 30 H -0.194 1.194 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.256 0.744 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.302 0.698 42 H 0.281 0.719 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.028 0.972 46 H 0.062 0.938 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.188 -1.574 -20.756 27.642 hybrid contribution -0.159 -0.637 1.105 1.285 sum 18.030 -2.210 -19.651 26.760 Atomic orbital electron populations 1.21792 0.95975 1.00070 1.02531 1.21838 0.96558 0.97126 1.00393 1.21457 0.91318 0.92237 0.90214 0.91819 1.21664 0.93100 0.97982 0.83212 0.90478 1.45865 1.16029 1.60913 1.12873 1.21392 0.80775 0.76970 0.91192 1.90730 1.57172 1.44005 1.55016 1.21702 0.96313 1.06573 0.92160 1.21454 0.96813 1.02915 0.92809 1.22235 0.87019 0.99782 0.91122 0.80817 1.45531 1.10529 1.39243 1.41412 1.15965 0.81538 0.81229 0.80986 1.91059 1.82824 1.37218 1.35234 1.44325 1.11584 1.38772 1.39958 1.21137 0.92071 0.77933 0.77261 1.90873 1.42793 1.56587 1.46499 1.23007 0.97364 0.99444 0.96660 1.21949 0.87549 0.97244 0.94899 1.44883 1.00903 1.65392 1.22834 1.18302 0.84329 1.39299 0.91160 0.91782 1.25827 0.96852 1.00195 0.98941 1.69883 1.26660 1.47774 1.15514 0.86088 0.78681 0.80218 0.79105 1.20692 1.24065 1.19423 0.93330 0.93035 0.93109 0.90551 0.94821 0.74444 0.85469 0.84299 0.89582 0.91644 0.69844 0.71947 0.90684 0.89292 0.97245 0.93770 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.03 71.98 0.65 -4.57 16 2 C -0.12 -3.94 5.49 30.60 0.17 -3.77 16 3 C 0.15 5.04 3.03 45.28 0.14 5.18 16 4 H 0.06 1.90 7.70 -2.39 -0.02 1.89 16 5 C 0.15 4.10 2.80 46.18 0.13 4.23 16 6 H 0.08 2.49 7.32 -2.38 -0.02 2.48 16 7 N -0.70 -12.59 5.19 -436.92 -2.27 -14.86 16 8 C 0.51 8.93 7.83 87.66 0.69 9.62 16 9 O -0.59 -16.60 15.66 -3.01 -0.05 -16.65 16 10 C -0.13 -0.66 5.64 29.85 0.17 -0.49 16 11 C -0.10 -0.86 4.25 30.60 0.13 -0.73 16 12 C 0.11 0.46 3.65 44.37 0.16 0.62 16 13 H 0.17 -0.48 8.14 -2.39 -0.02 -0.50 16 14 N -0.70 -3.40 6.06 -459.60 -2.79 -6.19 16 15 C 0.70 8.85 8.99 179.44 1.61 10.46 16 16 O -0.59 -12.53 18.04 -3.83 -0.07 -12.60 16 17 N -0.68 -6.91 5.70 -441.11 -2.52 -9.42 16 18 C 0.53 5.90 8.14 87.94 0.72 6.62 16 19 O -0.50 -9.18 18.02 -2.89 -0.05 -9.23 16 20 C -0.13 -3.78 6.77 31.99 0.22 -3.56 16 21 C 0.11 4.37 4.98 86.86 0.43 4.80 16 22 N -0.61 -26.46 2.73 -667.56 -1.82 -28.28 16 23 C -0.20 -10.53 7.36 84.03 0.62 -9.91 16 24 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 25 C -0.02 -1.28 5.45 84.86 0.46 -0.81 16 26 N -0.95 -57.79 13.97 21.65 0.30 -57.48 16 27 Si 0.93 46.41 24.71 68.60 1.69 48.11 16 28 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 29 H -0.31 -15.97 7.11 99.48 0.71 -15.27 16 30 H -0.27 -13.15 6.77 99.48 0.67 -12.47 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 2.31 5.60 -2.39 -0.01 2.30 16 33 H 0.05 1.69 8.13 -2.38 -0.02 1.67 16 34 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.42 4.71 8.34 -92.70 -0.77 3.94 16 37 H 0.13 -0.08 7.68 -2.39 -0.02 -0.10 16 38 H 0.14 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.09 1.07 8.10 -2.39 -0.02 1.05 16 40 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 41 H 0.45 0.14 8.61 -92.71 -0.80 -0.66 16 42 H 0.44 3.44 8.96 -92.71 -0.83 2.61 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 45 H 0.01 0.43 5.29 -2.39 -0.01 0.41 16 46 H 0.04 1.88 7.99 -2.39 -0.02 1.87 16 47 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -81.95 379.42 -2.67 -84.62 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -1.40 Total: 4.31 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 6.29 Total: 17.68 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -9.09 Total: -116.24 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.17 Total: -38.47 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.69 Total: 48.11 kcal Total: -81.95 -2.67 -84.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656759751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.894 kcal (2) G-P(sol) polarization free energy of solvation -81.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds