Wall clock time and date at job start Tue Mar 31 2020 21:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 H 1.08999 * 109.47565 * 302.96663 * 3 2 1 5 5 C 1.53001 * 109.47586 * 182.96763 * 3 2 1 6 6 N 1.46499 * 109.47342 * 185.00315 * 5 3 2 7 7 C 1.34779 * 119.99968 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00017 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.46773 * 180.02562 * 9 7 6 11 11 C 1.34326 * 126.44133 * 89.71526 * 10 9 7 12 12 N 1.34482 * 107.66785 * 179.87445 * 11 10 9 13 13 C 1.30257 * 108.70201 * 0.39143 * 12 11 10 14 14 C 1.50699 * 125.62093 * 179.73541 * 13 12 11 15 15 O 1.33973 * 108.75682 * 359.75688 * 13 12 11 16 16 N 1.46906 * 109.46986 * 62.96326 * 3 2 1 17 17 C 1.46905 * 110.99476 * 65.52574 * 16 3 2 18 18 C 1.50707 * 109.46752 * 182.18230 * 17 16 3 19 19 O 1.21297 * 119.99789 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99696 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99890 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99584 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99959 * 180.02562 * 21 20 18 24 24 N 1.31415 * 119.99692 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00106 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47080 * 90.00143 * 25 23 21 27 27 H 1.48501 * 109.47300 * 210.00291 * 25 23 21 28 28 H 1.48501 * 109.47285 * 330.00397 * 25 23 21 29 29 H 1.09003 * 109.47043 * 54.78072 * 1 2 3 30 30 H 1.08998 * 109.46906 * 174.76888 * 1 2 3 31 31 H 1.08997 * 109.47187 * 294.77619 * 1 2 3 32 32 H 1.09000 * 109.47075 * 240.00414 * 2 1 3 33 33 H 1.08997 * 109.47136 * 120.00178 * 2 1 3 34 34 H 1.09006 * 109.46748 * 304.99856 * 5 3 2 35 35 H 1.08992 * 109.47141 * 64.99763 * 5 3 2 36 36 H 0.96999 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.08996 * 109.47067 * 299.99934 * 9 7 6 38 38 H 1.08996 * 109.46652 * 60.00540 * 9 7 6 39 39 H 1.07996 * 126.17088 * 359.97438 * 11 10 9 40 40 H 1.08996 * 109.46997 * 270.02483 * 14 13 12 41 41 H 1.08999 * 109.46758 * 30.02590 * 14 13 12 42 42 H 1.09000 * 109.46840 * 150.02698 * 14 13 12 43 43 H 1.00899 * 111.00181 * 189.47549 * 16 3 2 44 44 H 1.09003 * 109.47100 * 302.17716 * 17 16 3 45 45 H 1.08998 * 109.47062 * 62.18219 * 17 16 3 46 46 H 0.96994 * 120.00349 * 359.97438 * 20 18 17 47 47 H 0.97000 * 119.99920 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9715 -0.8622 5 6 3.5682 1.4432 -0.0747 6 7 4.0623 2.8171 0.0455 7 6 5.3870 3.0626 0.0070 8 8 6.1700 2.1460 -0.1266 9 6 5.8953 4.4760 0.1301 10 6 7.4005 4.4765 0.0567 11 6 8.1450 4.5838 -1.0562 12 7 9.4378 4.5443 -0.6879 13 6 9.4994 4.4086 0.6062 14 6 10.7645 4.3167 1.4198 15 8 8.2526 4.3638 1.0945 16 7 1.6096 2.1140 1.2337 17 6 2.2440 1.5076 2.4118 18 6 1.7387 2.1857 3.6592 19 8 0.9301 3.0859 3.5750 20 7 2.1853 1.7919 4.8683 21 6 1.7253 2.4084 6.0032 22 1 1.0053 3.2100 5.9281 23 6 2.1861 2.0028 7.2496 24 7 1.7455 2.5941 8.3374 25 14 3.4319 0.6169 7.3792 26 1 4.8052 1.1797 7.3306 27 1 3.2378 -0.1048 8.6625 28 1 3.2430 -0.3259 6.2476 29 1 -0.3633 0.5927 -0.8396 30 1 -0.3633 -1.0234 -0.0937 31 1 -0.3633 0.4307 0.9330 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.9719 0.8395 0.7382 35 1 3.8854 1.0252 -1.0300 36 1 3.4361 3.5501 0.1528 37 1 5.4920 5.0792 -0.6832 38 1 5.5776 4.8944 1.0851 39 1 7.7726 4.6854 -2.0649 40 1 11.0643 3.2726 1.5087 41 1 11.5557 4.8811 0.9263 42 1 10.5886 4.7300 2.4130 43 1 1.7982 3.1043 1.1910 44 1 1.9988 0.4462 2.4506 45 1 3.3252 1.6286 2.3450 46 1 2.8316 1.0718 4.9357 47 1 2.0669 2.3107 9.2076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665798685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:30 Heat of formation + Delta-G solvation = -79.255073 kcal Electronic energy + Delta-G solvation = -29274.768195 eV Core-core repulsion = 25072.140314 eV Total energy + Delta-G solvation = -4202.627881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.37566 -41.10718 -40.29236 -38.67970 -36.01760 -35.81669 -35.09764 -34.18191 -33.76743 -33.09627 -31.58005 -29.71152 -28.23022 -26.90528 -25.85006 -24.29881 -23.37955 -22.29426 -21.76589 -21.38044 -20.87679 -20.13913 -18.67259 -18.25351 -18.08836 -17.47533 -17.14098 -17.08774 -16.77733 -16.48577 -15.86799 -15.61054 -15.38508 -15.11190 -14.99561 -14.93274 -14.64936 -14.44706 -14.29359 -14.12769 -14.00261 -13.86766 -13.68571 -13.37670 -13.22503 -13.09052 -12.92886 -12.63974 -12.43643 -12.33811 -12.28071 -12.01228 -11.79183 -11.64429 -11.55343 -11.50393 -11.17655 -10.44359 -10.25677 -10.22864 -9.71234 -9.37122 -8.42872 -6.02784 0.34803 1.27521 1.31635 1.40227 1.47242 1.54073 1.67162 1.94193 2.17107 2.19725 2.72114 3.11897 3.13830 3.39920 3.53588 3.70047 3.80466 3.97941 4.03116 4.09142 4.11473 4.26574 4.33515 4.34462 4.41213 4.54021 4.58185 4.61458 4.64377 4.68424 4.71689 4.94621 4.98646 4.99488 5.00515 5.20823 5.29426 5.34782 5.39177 5.50461 5.60103 5.88880 6.00636 6.33840 6.40603 6.57930 6.66889 6.87051 7.08215 7.38762 7.94259 8.74576 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007699 B = 0.003320 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.801169 B = 8432.287215 C =11147.921459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C 0.088 3.912 4 H 0.114 0.886 5 C 0.084 3.916 6 N -0.716 5.716 7 C 0.515 3.485 8 O -0.578 6.578 9 C -0.053 4.053 10 C -0.044 4.044 11 C -0.037 4.037 12 N -0.515 5.515 13 C 0.182 3.818 14 C -0.058 4.058 15 O -0.217 6.217 16 N -0.663 5.663 17 C 0.059 3.941 18 C 0.452 3.548 19 O -0.607 6.607 20 N -0.594 5.594 21 C -0.325 4.325 22 H 0.060 0.940 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.957 3.043 26 H -0.260 1.260 27 H -0.273 1.273 28 H -0.235 1.235 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.413 0.587 37 H 0.171 0.829 38 H 0.129 0.871 39 H 0.204 0.796 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.347 0.653 44 H 0.108 0.892 45 H 0.065 0.935 46 H 0.386 0.614 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.149 -1.370 -21.299 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.022 4.022 4 H 0.132 0.868 5 C -0.042 4.042 6 N -0.369 5.369 7 C 0.302 3.698 8 O -0.458 6.458 9 C -0.093 4.093 10 C -0.097 4.097 11 C -0.175 4.175 12 N -0.245 5.245 13 C -0.024 4.024 14 C -0.115 4.115 15 O -0.105 6.105 16 N -0.295 5.295 17 C -0.073 4.073 18 C 0.240 3.760 19 O -0.491 6.491 20 N -0.236 5.236 21 C -0.454 4.454 22 H 0.078 0.922 23 C -0.210 4.210 24 N -0.573 5.573 25 Si 0.778 3.222 26 H -0.185 1.185 27 H -0.198 1.198 28 H -0.159 1.159 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.251 0.749 37 H 0.188 0.812 38 H 0.147 0.853 39 H 0.221 0.779 40 H 0.122 0.878 41 H 0.134 0.866 42 H 0.122 0.878 43 H 0.167 0.833 44 H 0.126 0.874 45 H 0.082 0.918 46 H 0.221 0.779 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.067 -1.726 -21.507 24.721 hybrid contribution 0.416 0.023 1.222 1.291 sum 12.483 -1.704 -20.284 23.878 Atomic orbital electron populations 1.21577 0.95126 1.01119 1.01847 1.21544 0.96763 0.94106 1.02819 1.22044 0.89969 0.97483 0.92731 0.86816 1.22168 0.96392 0.82953 1.02658 1.45844 1.06707 1.10402 1.73941 1.20754 0.82381 0.91252 0.75426 1.90741 1.56695 1.47751 1.50576 1.20247 0.84589 0.94930 1.09494 1.22976 0.93663 1.07420 0.85602 1.23407 0.87854 1.05395 1.00821 1.70432 1.22217 1.20082 1.11794 1.27230 0.86337 0.98925 0.89918 1.20524 0.86388 1.05809 0.98763 1.84383 1.17915 1.69619 1.38532 1.60182 1.61205 1.07826 1.00310 1.21634 0.97250 1.00240 0.88183 1.20897 0.84214 0.85783 0.85138 1.90545 1.37341 1.34067 1.87126 1.42088 1.41440 1.34495 1.05562 1.19007 1.24657 1.17293 0.84429 0.92187 1.26005 1.00128 1.00992 0.93908 1.69790 1.45168 1.43509 0.98833 0.85473 0.78549 0.78512 0.79711 1.18487 1.19837 1.15897 0.92172 0.92667 0.94076 0.89389 0.92291 0.92432 0.90208 0.74950 0.81174 0.85294 0.77908 0.87827 0.86605 0.87793 0.83252 0.87382 0.91768 0.77893 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.71 71.98 0.70 -1.85 16 2 C -0.11 -1.80 5.29 30.59 0.16 -1.64 16 3 C 0.09 1.39 2.73 44.91 0.12 1.52 16 4 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 5 C 0.08 1.42 4.47 86.38 0.39 1.81 16 6 N -0.72 -11.39 5.31 -463.05 -2.46 -13.85 16 7 C 0.51 10.66 7.82 87.66 0.69 11.35 16 8 O -0.58 -17.64 16.03 -3.04 -0.05 -17.69 16 9 C -0.05 -0.80 6.25 29.10 0.18 -0.61 16 10 C -0.04 -0.99 5.88 24.79 0.15 -0.84 16 11 C -0.04 -0.83 11.80 83.39 0.98 0.15 16 12 N -0.51 -13.25 11.29 -303.82 -3.43 -16.68 16 13 C 0.18 4.24 8.34 88.34 0.74 4.98 16 14 C -0.06 -0.75 10.51 71.24 0.75 0.00 16 15 O -0.22 -5.70 10.78 -3.77 -0.04 -5.74 16 16 N -0.66 -15.75 5.38 -495.54 -2.66 -18.41 16 17 C 0.06 1.70 5.32 85.56 0.46 2.15 16 18 C 0.45 19.50 7.82 87.66 0.69 20.18 16 19 O -0.61 -31.69 15.83 -3.08 -0.05 -31.74 16 20 N -0.59 -27.67 5.09 -306.97 -1.56 -29.23 16 21 C -0.32 -18.75 10.16 84.04 0.85 -17.89 16 22 H 0.06 4.10 7.39 -2.91 -0.02 4.08 16 23 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 24 N -0.93 -55.83 13.96 21.66 0.30 -55.52 16 25 Si 0.96 39.23 27.74 68.60 1.90 41.13 16 26 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 28 H -0.24 -8.28 6.52 99.48 0.65 -7.63 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 1.01 7.85 -2.39 -0.02 0.99 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.03 6.36 -2.39 -0.02 1.02 16 34 H 0.06 1.20 6.69 -2.38 -0.02 1.18 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.41 4.74 7.23 -92.71 -0.67 4.07 16 37 H 0.17 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.20 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 43 H 0.35 8.14 7.24 -89.69 -0.65 7.49 16 44 H 0.11 2.80 6.30 -2.39 -0.02 2.78 16 45 H 0.06 1.68 6.41 -2.39 -0.02 1.66 16 46 H 0.39 15.33 5.76 -92.71 -0.53 14.79 16 47 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -87.29 392.75 -1.62 -88.91 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -0.88 Total: 39.69 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 7.32 Total: 19.14 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -9.82 Total: -133.71 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -0.14 Total: -55.16 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.13 kcal Total: -87.29 -1.62 -88.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665798685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.651 kcal (2) G-P(sol) polarization free energy of solvation -87.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds