Wall clock time and date at job start Tue Mar 31 2020 21:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34773 * 124.17833 * 2 1 4 4 O 1.21237 * 127.15568 * 359.92651 * 3 2 1 5 5 C 1.51578 * 105.68649 * 179.74612 * 3 2 1 6 6 N 1.47311 * 103.59306 * 0.33255 * 5 3 2 7 7 C 1.46503 * 126.68774 * 179.97438 * 6 5 3 8 8 C 1.50698 * 109.47044 * 269.70924 * 7 6 5 9 9 O 1.21290 * 119.99834 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00296 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00318 * 185.19000 * 10 8 7 12 12 C 1.53005 * 109.47145 * 183.95049 * 11 10 8 13 13 C 1.52999 * 109.46969 * 63.95184 * 11 10 8 14 14 N 1.46500 * 109.47030 * 59.99927 * 13 11 10 15 15 C 1.36937 * 120.00138 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00269 * 359.97438 * 15 14 13 17 17 C 1.38808 * 120.00284 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99832 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00092 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47388 * 89.99626 * 19 17 15 21 21 H 1.48510 * 109.47066 * 209.99697 * 19 17 15 22 22 H 1.48504 * 109.47270 * 329.99545 * 19 17 15 23 23 C 1.52998 * 109.47600 * 303.95445 * 11 10 8 24 24 C 1.53001 * 117.51697 * 228.44987 * 23 11 10 25 25 C 1.53005 * 117.49462 * 297.07847 * 23 11 10 26 26 C 1.33788 * 124.18010 * 179.97438 * 2 1 3 27 27 O 1.21535 * 123.77297 * 0.03364 * 26 2 1 28 28 H 1.09007 * 109.47124 * 270.03930 * 1 2 3 29 29 H 1.08995 * 109.47597 * 30.03712 * 1 2 3 30 30 H 1.09005 * 109.47213 * 150.04026 * 1 2 3 31 31 H 1.09004 * 110.69157 * 241.76317 * 5 3 2 32 32 H 1.08995 * 110.50723 * 118.81862 * 5 3 2 33 33 H 1.09002 * 109.46959 * 149.71520 * 7 6 5 34 34 H 1.08998 * 109.47200 * 29.71185 * 7 6 5 35 35 H 0.97001 * 119.99979 * 5.20019 * 10 8 7 36 36 H 1.09003 * 109.46706 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47099 * 299.99868 * 12 11 10 38 38 H 1.08993 * 109.46980 * 60.00226 * 12 11 10 39 39 H 1.09004 * 109.47388 * 179.97438 * 13 11 10 40 40 H 1.08993 * 109.47268 * 299.99898 * 13 11 10 41 41 H 0.96996 * 120.00435 * 359.97438 * 14 13 11 42 42 H 0.97008 * 119.99757 * 180.02562 * 18 17 15 43 43 H 1.08999 * 115.55380 * 82.74298 * 23 11 10 44 44 H 1.09002 * 117.50163 * 214.96480 * 24 23 11 45 45 H 1.08997 * 117.50077 * 359.97438 * 24 23 11 46 46 H 1.08998 * 117.49808 * 359.97048 * 25 23 11 47 47 H 1.08998 * 117.49901 * 144.97755 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2221 1.1150 0.0000 4 8 1.8340 2.2636 -0.0012 5 6 3.6596 0.6342 0.0065 6 7 3.5338 -0.8335 0.0013 7 6 4.6296 -1.8059 0.0039 8 6 5.0077 -2.1404 -1.4160 9 8 4.4200 -1.6175 -2.3392 10 7 5.9988 -3.0204 -1.6600 11 6 6.4433 -3.2604 -3.0351 12 6 7.5011 -4.3658 -3.0437 13 6 7.0440 -1.9753 -3.6085 14 7 8.1874 -1.5634 -2.7905 15 6 8.8881 -0.4321 -3.1133 16 1 8.5981 0.1564 -3.9712 17 6 9.9718 -0.0421 -2.3386 18 7 10.3256 -0.7595 -1.2934 19 14 10.9281 1.5009 -2.7795 20 1 10.3290 2.6696 -2.0863 21 1 12.3425 1.3450 -2.3546 22 1 10.8731 1.7147 -4.2480 23 6 5.2492 -3.6905 -3.8895 24 6 5.4212 -4.9277 -4.7730 25 6 4.5495 -4.9994 -3.5176 26 6 2.2166 -1.1068 0.0005 27 8 1.7604 -2.2333 0.0004 28 1 -0.3634 0.0007 1.0277 29 1 -0.3634 0.8896 -0.5144 30 1 -0.3634 -0.8904 -0.5132 31 1 4.1745 0.9718 0.9059 32 1 4.1810 0.9776 -0.8869 33 1 4.3097 -2.7124 0.5178 34 1 5.4912 -1.3811 0.5189 35 1 6.4178 -3.4951 -0.9251 36 1 7.8321 -4.5440 -4.0668 37 1 8.3518 -4.0593 -2.4351 38 1 7.0731 -5.2813 -2.6352 39 1 7.3751 -2.1539 -4.6315 40 1 6.2905 -1.1878 -3.6024 41 1 8.4477 -2.0917 -2.0198 42 1 11.0828 -0.4867 -0.7517 43 1 4.6295 -2.8801 -4.2734 44 1 4.9148 -4.9313 -5.7382 45 1 6.3855 -5.4353 -4.7461 46 1 4.9403 -5.5542 -2.6646 47 1 3.4696 -5.0500 -3.6566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666031721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:30 Heat of formation + Delta-G solvation = -17.989008 kcal Electronic energy + Delta-G solvation = -30897.080721 eV Core-core repulsion = 26697.109535 eV Total energy + Delta-G solvation = -4199.971185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.38380 -40.08786 -38.72549 -37.68788 -36.16210 -35.25805 -34.92884 -33.48807 -31.53462 -30.33345 -29.23936 -27.25922 -26.68618 -26.07719 -23.85978 -22.77201 -22.25331 -21.45328 -21.09187 -20.08437 -18.77115 -17.77015 -17.57733 -17.28406 -16.79749 -16.62300 -16.02561 -15.74291 -15.37811 -14.92684 -14.63456 -14.37368 -14.33393 -14.27016 -14.05125 -13.92964 -13.34136 -13.25853 -12.90710 -12.82276 -12.80390 -12.39402 -12.28931 -12.01216 -11.80631 -11.28907 -11.07260 -11.01202 -10.92873 -10.84506 -10.65680 -10.36901 -10.30934 -10.17230 -9.96384 -9.91285 -9.77032 -9.67114 -8.95875 -8.79763 -8.62575 -6.91943 -5.80518 -3.06937 1.51693 1.89274 2.73578 2.88620 2.93167 3.41062 3.44453 3.47570 3.48824 3.94365 4.13430 4.54074 4.55039 4.74793 4.91350 4.96854 5.02929 5.08739 5.11287 5.17627 5.21934 5.23767 5.33801 5.35189 5.41316 5.45164 5.56608 5.66216 5.68067 5.78105 5.93788 6.01618 6.18011 6.20275 6.23380 6.27879 6.51406 6.52439 6.59270 6.84174 6.96601 7.03595 7.20981 7.69094 7.81192 7.96966 8.39334 8.54313 9.51151 10.08055 10.44297 11.42485 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009028 B = 0.004190 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.787908 B = 6681.235545 C = 9023.544034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.580 5.580 3 C 0.527 3.473 4 O -0.474 6.474 5 C 0.064 3.936 6 N -0.603 5.603 7 C 0.132 3.868 8 C 0.505 3.495 9 O -0.526 6.526 10 N -0.707 5.707 11 C 0.202 3.798 12 C -0.154 4.154 13 C 0.148 3.852 14 N -0.726 5.726 15 C -0.232 4.232 16 H 0.068 0.932 17 C -0.014 4.014 18 N -0.936 5.936 19 Si 0.904 3.096 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.283 1.283 23 C -0.141 4.141 24 C -0.184 4.184 25 C -0.172 4.172 26 C 0.707 3.293 27 O -0.544 6.544 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.398 0.602 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.025 0.975 40 H 0.037 0.963 41 H 0.382 0.618 42 H 0.254 0.746 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.089 0.911 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.555 -6.069 4.215 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.326 5.326 3 C 0.315 3.685 4 O -0.345 6.345 5 C -0.062 4.062 6 N -0.340 5.340 7 C 0.006 3.994 8 C 0.289 3.711 9 O -0.402 6.402 10 N -0.359 5.359 11 C 0.117 3.883 12 C -0.212 4.212 13 C 0.020 3.980 14 N -0.371 5.371 15 C -0.363 4.363 16 H 0.086 0.914 17 C -0.209 4.209 18 N -0.586 5.586 19 Si 0.736 3.264 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.161 4.161 24 C -0.221 4.221 25 C -0.210 4.210 26 C 0.409 3.591 27 O -0.418 6.418 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.231 0.769 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.216 0.784 42 H 0.063 0.937 43 H 0.131 0.869 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.108 0.892 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.352 -5.588 3.450 16.698 hybrid contribution 0.934 0.545 0.318 1.127 sum -14.418 -5.043 3.768 15.733 Atomic orbital electron populations 1.21792 0.75230 1.04679 1.03416 1.46228 1.09512 1.08173 1.68715 1.20900 0.88922 0.84644 0.74052 1.90809 1.79213 1.17930 1.46515 1.22572 0.95559 0.80710 1.07333 1.46910 1.04599 1.06275 1.76247 1.21203 0.89140 0.93166 0.95863 1.20741 0.79829 0.79231 0.91327 1.90662 1.52314 1.51715 1.45481 1.45893 1.37366 1.43607 1.09005 1.20021 0.91511 0.96289 0.80507 1.22126 0.98738 0.96687 1.03632 1.20983 0.90355 0.92774 0.93937 1.42261 1.32416 1.29607 1.32821 1.19228 1.07476 1.00714 1.08915 0.91400 1.24656 0.99134 0.99145 0.97979 1.69637 1.29930 1.40025 1.18958 0.86228 0.79333 0.83143 0.77739 1.21816 1.21849 1.20843 1.22572 0.99851 0.91829 1.01817 1.23142 1.01833 1.02282 0.94870 1.22779 0.98210 1.01170 0.98811 1.15727 0.81751 0.84128 0.77498 1.90960 1.75198 1.20320 1.55292 0.91048 0.89504 0.89287 0.85605 0.85211 0.86666 0.85938 0.76852 0.90717 0.90597 0.92797 0.95706 0.94540 0.78418 0.93663 0.86869 0.89293 0.88200 0.89212 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 10.73 59.84 0.64 1.46 16 2 N -0.58 -6.98 3.00 -128.17 -0.39 -7.37 16 3 C 0.53 6.42 8.32 -10.56 -0.09 6.33 16 4 O -0.47 -6.80 17.76 5.59 0.10 -6.70 16 5 C 0.06 0.69 7.66 -4.32 -0.03 0.66 16 6 N -0.60 -7.43 2.51 -181.40 -0.45 -7.88 16 7 C 0.13 1.49 6.63 -5.19 -0.03 1.46 16 8 C 0.50 7.55 7.31 -10.99 -0.08 7.47 16 9 O -0.53 -9.69 13.25 5.55 0.07 -9.61 16 10 N -0.71 -9.83 4.71 -47.61 -0.22 -10.05 16 11 C 0.20 3.12 0.54 -131.82 -0.07 3.05 16 12 C -0.15 -2.14 7.04 37.16 0.26 -1.87 16 13 C 0.15 2.97 5.02 -4.04 -0.02 2.95 16 14 N -0.73 -17.11 5.17 -59.91 -0.31 -17.42 16 15 C -0.23 -6.27 9.99 -15.06 -0.15 -6.42 16 16 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 18 N -0.94 -26.62 13.06 55.49 0.72 -25.89 16 19 Si 0.90 21.90 29.55 -169.99 -5.02 16.88 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.14 -2.08 4.05 -90.62 -0.37 -2.45 16 24 C -0.18 -2.26 9.62 -26.73 -0.26 -2.51 16 25 C -0.17 -2.18 9.81 -26.73 -0.26 -2.44 16 26 C 0.71 9.78 8.31 -88.02 -0.73 9.05 16 27 O -0.54 -8.94 17.15 5.34 0.09 -8.85 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.71 8.00 -51.93 -0.42 0.29 16 30 H 0.09 0.80 7.86 -51.93 -0.41 0.39 16 31 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.12 1.10 8.03 -51.93 -0.42 0.69 16 34 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.40 4.52 8.48 -40.82 -0.35 4.18 16 36 H 0.07 1.03 6.84 -51.93 -0.36 0.67 16 37 H 0.08 1.19 6.86 -51.93 -0.36 0.84 16 38 H 0.05 0.62 7.01 -51.93 -0.36 0.25 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.04 0.82 6.64 -51.93 -0.35 0.48 16 41 H 0.38 9.10 6.35 -40.82 -0.26 8.84 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.11 1.95 7.18 -51.93 -0.37 1.58 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.10 1.15 5.87 -51.93 -0.31 0.84 16 46 H 0.09 1.06 7.42 -51.93 -0.39 0.67 16 47 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -35.12 387.69 -7.69 -42.81 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.83 Total: 12.00 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: -1.29 Total: 16.25 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: -0.65 Total: -68.62 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: 0.26 Total: -25.17 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.12 -7.69 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666031721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.820 kcal (2) G-P(sol) polarization free energy of solvation -35.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds