Wall clock time and date at job start Tue Mar 31 2020 21:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34773 * 124.17833 * 2 1 4 4 O 1.21237 * 127.15568 * 359.92651 * 3 2 1 5 5 C 1.51578 * 105.68649 * 179.74612 * 3 2 1 6 6 N 1.47311 * 103.59306 * 0.33255 * 5 3 2 7 7 C 1.46503 * 126.68774 * 179.97438 * 6 5 3 8 8 C 1.50698 * 109.47044 * 269.70924 * 7 6 5 9 9 O 1.21290 * 119.99834 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00296 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00318 * 185.19000 * 10 8 7 12 12 C 1.53005 * 109.47145 * 183.95049 * 11 10 8 13 13 C 1.52999 * 109.46969 * 63.95184 * 11 10 8 14 14 N 1.46500 * 109.47030 * 59.99927 * 13 11 10 15 15 C 1.36937 * 120.00138 * 180.02562 * 14 13 11 16 16 H 1.08003 * 120.00269 * 359.97438 * 15 14 13 17 17 C 1.38808 * 120.00284 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99832 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00092 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47388 * 89.99626 * 19 17 15 21 21 H 1.48510 * 109.47066 * 209.99697 * 19 17 15 22 22 H 1.48504 * 109.47270 * 329.99545 * 19 17 15 23 23 C 1.52998 * 109.47600 * 303.95445 * 11 10 8 24 24 C 1.53001 * 117.51697 * 228.44987 * 23 11 10 25 25 C 1.53005 * 117.49462 * 297.07847 * 23 11 10 26 26 C 1.33788 * 124.18010 * 179.97438 * 2 1 3 27 27 O 1.21535 * 123.77297 * 0.03364 * 26 2 1 28 28 H 1.09007 * 109.47124 * 270.03930 * 1 2 3 29 29 H 1.08995 * 109.47597 * 30.03712 * 1 2 3 30 30 H 1.09005 * 109.47213 * 150.04026 * 1 2 3 31 31 H 1.09004 * 110.69157 * 241.76317 * 5 3 2 32 32 H 1.08995 * 110.50723 * 118.81862 * 5 3 2 33 33 H 1.09002 * 109.46959 * 149.71520 * 7 6 5 34 34 H 1.08998 * 109.47200 * 29.71185 * 7 6 5 35 35 H 0.97001 * 119.99979 * 5.20019 * 10 8 7 36 36 H 1.09003 * 109.46706 * 180.02562 * 12 11 10 37 37 H 1.09000 * 109.47099 * 299.99868 * 12 11 10 38 38 H 1.08993 * 109.46980 * 60.00226 * 12 11 10 39 39 H 1.09004 * 109.47388 * 179.97438 * 13 11 10 40 40 H 1.08993 * 109.47268 * 299.99898 * 13 11 10 41 41 H 0.96996 * 120.00435 * 359.97438 * 14 13 11 42 42 H 0.97008 * 119.99757 * 180.02562 * 18 17 15 43 43 H 1.08999 * 115.55380 * 82.74298 * 23 11 10 44 44 H 1.09002 * 117.50163 * 214.96480 * 24 23 11 45 45 H 1.08997 * 117.50077 * 359.97438 * 24 23 11 46 46 H 1.08998 * 117.49808 * 359.97048 * 25 23 11 47 47 H 1.08998 * 117.49901 * 144.97755 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2221 1.1150 0.0000 4 8 1.8340 2.2636 -0.0012 5 6 3.6596 0.6342 0.0065 6 7 3.5338 -0.8335 0.0013 7 6 4.6296 -1.8059 0.0039 8 6 5.0077 -2.1404 -1.4160 9 8 4.4200 -1.6175 -2.3392 10 7 5.9988 -3.0204 -1.6600 11 6 6.4433 -3.2604 -3.0351 12 6 7.5011 -4.3658 -3.0437 13 6 7.0440 -1.9753 -3.6085 14 7 8.1874 -1.5634 -2.7905 15 6 8.8881 -0.4321 -3.1133 16 1 8.5981 0.1564 -3.9712 17 6 9.9718 -0.0421 -2.3386 18 7 10.3256 -0.7595 -1.2934 19 14 10.9281 1.5009 -2.7795 20 1 10.3290 2.6696 -2.0863 21 1 12.3425 1.3450 -2.3546 22 1 10.8731 1.7147 -4.2480 23 6 5.2492 -3.6905 -3.8895 24 6 5.4212 -4.9277 -4.7730 25 6 4.5495 -4.9994 -3.5176 26 6 2.2166 -1.1068 0.0005 27 8 1.7604 -2.2333 0.0004 28 1 -0.3634 0.0007 1.0277 29 1 -0.3634 0.8896 -0.5144 30 1 -0.3634 -0.8904 -0.5132 31 1 4.1745 0.9718 0.9059 32 1 4.1810 0.9776 -0.8869 33 1 4.3097 -2.7124 0.5178 34 1 5.4912 -1.3811 0.5189 35 1 6.4178 -3.4951 -0.9251 36 1 7.8321 -4.5440 -4.0668 37 1 8.3518 -4.0593 -2.4351 38 1 7.0731 -5.2813 -2.6352 39 1 7.3751 -2.1539 -4.6315 40 1 6.2905 -1.1878 -3.6024 41 1 8.4477 -2.0917 -2.0198 42 1 11.0828 -0.4867 -0.7517 43 1 4.6295 -2.8801 -4.2734 44 1 4.9148 -4.9313 -5.7382 45 1 6.3855 -5.4353 -4.7461 46 1 4.9403 -5.5542 -2.6646 47 1 3.4696 -5.0500 -3.6566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666031721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:29 Heat of formation + Delta-G solvation = -42.705052 kcal Electronic energy + Delta-G solvation = -30898.152489 eV Core-core repulsion = 26697.109535 eV Total energy + Delta-G solvation = -4201.042954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.37752 -41.29288 -39.79467 -38.86014 -37.25058 -36.58072 -36.15180 -34.99508 -33.15953 -31.58390 -30.50945 -28.16939 -27.80727 -27.44517 -25.57717 -23.84506 -23.30843 -22.87497 -22.18467 -21.12249 -20.06545 -19.20592 -18.79706 -18.54136 -17.80812 -17.67273 -17.20872 -16.84513 -16.70948 -16.39861 -15.90043 -15.70220 -15.52823 -15.33167 -15.11755 -15.06972 -14.90636 -14.53451 -14.38352 -13.75889 -13.70012 -13.55833 -13.54024 -13.24494 -13.05074 -12.92509 -12.76824 -12.40778 -12.13459 -12.11279 -12.07368 -11.97269 -11.70983 -11.44327 -11.40092 -11.04312 -10.95600 -10.93596 -10.80191 -9.94630 -9.86525 -8.91784 -7.91773 -5.17310 0.51095 0.96021 1.48843 1.50027 1.57556 1.76577 1.79012 1.88775 2.36573 2.58278 2.99829 3.07699 3.41655 3.56165 3.66020 3.86020 3.96724 4.09467 4.17372 4.19101 4.21979 4.28466 4.33256 4.35761 4.36687 4.40525 4.47764 4.55832 4.68701 4.77944 4.78153 4.92780 4.94189 5.00636 5.05176 5.17314 5.23947 5.29668 5.31695 5.44338 5.52162 5.72544 5.97203 6.23521 6.31143 6.70954 6.93182 7.39802 7.42350 8.12016 8.43370 9.30501 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009028 B = 0.004190 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.787908 B = 6681.235545 C = 9023.544034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.581 5.581 3 C 0.530 3.470 4 O -0.498 6.498 5 C 0.066 3.934 6 N -0.602 5.602 7 C 0.134 3.866 8 C 0.495 3.505 9 O -0.567 6.567 10 N -0.701 5.701 11 C 0.212 3.788 12 C -0.146 4.146 13 C 0.153 3.847 14 N -0.726 5.726 15 C -0.244 4.244 16 H 0.059 0.941 17 C -0.059 4.059 18 N -0.957 5.957 19 Si 0.961 3.039 20 H -0.288 1.288 21 H -0.293 1.293 22 H -0.279 1.279 23 C -0.162 4.162 24 C -0.169 4.169 25 C -0.158 4.158 26 C 0.703 3.297 27 O -0.574 6.574 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.161 0.839 32 H 0.120 0.880 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.412 0.588 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.015 0.985 40 H 0.009 0.991 41 H 0.381 0.619 42 H 0.252 0.748 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 -7.060 5.056 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.326 5.326 3 C 0.320 3.680 4 O -0.370 6.370 5 C -0.059 4.059 6 N -0.338 5.338 7 C 0.010 3.990 8 C 0.281 3.719 9 O -0.445 6.445 10 N -0.353 5.353 11 C 0.126 3.874 12 C -0.203 4.203 13 C 0.025 3.975 14 N -0.370 5.370 15 C -0.376 4.376 16 H 0.077 0.923 17 C -0.252 4.252 18 N -0.608 5.608 19 Si 0.791 3.209 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.205 1.205 23 C -0.182 4.182 24 C -0.206 4.206 25 C -0.195 4.195 26 C 0.405 3.595 27 O -0.450 6.450 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.179 0.821 32 H 0.138 0.862 33 H 0.156 0.844 34 H 0.166 0.834 35 H 0.248 0.752 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.033 0.967 40 H 0.027 0.973 41 H 0.215 0.785 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.132 0.868 46 H 0.124 0.876 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.133 -6.592 4.297 17.057 hybrid contribution 0.819 0.869 -0.013 1.194 sum -14.315 -5.723 4.284 16.000 Atomic orbital electron populations 1.22017 0.73780 1.05030 1.04858 1.46340 1.10563 1.07658 1.68046 1.21023 0.89449 0.84246 0.73331 1.90798 1.79707 1.18712 1.47800 1.22694 0.94888 0.79865 1.08466 1.47046 1.04368 1.07021 1.75387 1.21387 0.89790 0.94254 0.93608 1.21461 0.79350 0.78599 0.92508 1.90655 1.53693 1.53092 1.47083 1.45844 1.37018 1.43518 1.08926 1.19768 0.92134 0.94288 0.81254 1.22060 0.97461 0.97160 1.03636 1.20952 0.88620 0.94498 0.93408 1.42268 1.32884 1.28745 1.33054 1.19456 1.07876 1.01632 1.08599 0.92278 1.25268 1.00057 1.01700 0.98206 1.69743 1.30242 1.41179 1.19612 0.85341 0.77863 0.80198 0.77528 1.21547 1.21915 1.20489 1.22310 0.99948 0.92130 1.03766 1.23253 1.02460 0.99820 0.95081 1.22820 0.98202 0.98967 0.99547 1.15893 0.82284 0.84035 0.77280 1.90930 1.75816 1.21427 1.56836 0.89124 0.88680 0.89395 0.82145 0.86206 0.84415 0.83389 0.75178 0.90583 0.92432 0.89589 0.96703 0.97307 0.78526 0.93940 0.90116 0.88506 0.86763 0.87641 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 10.73 127.77 1.37 2.83 16 2 N -0.58 -13.66 3.00 -796.66 -2.39 -16.05 16 3 C 0.53 12.62 8.32 87.94 0.73 13.36 16 4 O -0.50 -14.09 17.76 -2.90 -0.05 -14.14 16 5 C 0.07 1.36 7.66 85.76 0.66 2.02 16 6 N -0.60 -14.17 2.51 -846.25 -2.12 -16.29 16 7 C 0.13 2.82 6.63 85.63 0.57 3.38 16 8 C 0.50 14.56 7.31 87.66 0.64 15.20 16 9 O -0.57 -21.36 13.25 -3.06 -0.04 -21.40 16 10 N -0.70 -18.76 4.71 -422.93 -1.99 -20.76 16 11 C 0.21 6.42 0.54 3.61 0.00 6.42 16 12 C -0.15 -3.76 7.04 71.98 0.51 -3.26 16 13 C 0.15 6.27 5.02 86.38 0.43 6.71 16 14 N -0.73 -34.42 5.17 -343.46 -1.78 -36.19 16 15 C -0.24 -13.24 9.99 84.03 0.84 -12.40 16 16 H 0.06 3.25 7.83 -2.91 -0.02 3.23 16 17 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 18 N -0.96 -53.99 13.06 21.65 0.28 -53.70 16 19 Si 0.96 44.80 29.55 68.60 2.03 46.83 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 C -0.16 -4.70 4.05 -10.79 -0.04 -4.74 16 24 C -0.17 -3.81 9.62 30.60 0.29 -3.51 16 25 C -0.16 -3.68 9.81 30.60 0.30 -3.38 16 26 C 0.70 19.01 8.31 179.44 1.49 20.50 16 27 O -0.57 -18.60 17.15 -3.83 -0.07 -18.67 16 28 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.09 1.49 8.00 -2.39 -0.02 1.47 16 30 H 0.09 1.56 7.86 -2.38 -0.02 1.54 16 31 H 0.16 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.12 2.80 8.14 -2.39 -0.02 2.79 16 33 H 0.14 2.30 8.03 -2.39 -0.02 2.28 16 34 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.41 8.56 8.48 -92.71 -0.79 7.78 16 36 H 0.08 1.95 6.84 -2.39 -0.02 1.93 16 37 H 0.06 1.72 6.86 -2.39 -0.02 1.71 16 38 H 0.09 1.67 7.01 -2.39 -0.02 1.66 16 39 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.01 0.42 6.64 -2.39 -0.02 0.40 16 41 H 0.38 18.11 6.35 -92.71 -0.59 17.52 16 42 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 43 H 0.08 2.90 7.18 -2.39 -0.02 2.88 16 44 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.11 2.27 5.87 -2.39 -0.01 2.26 16 46 H 0.11 2.13 7.42 -2.39 -0.02 2.11 16 47 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -76.30 387.69 1.77 -74.53 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -0.35 Total: 35.49 kcal Atomic # 6 Polarization: 32.11 SS G_CDS: 8.26 Total: 40.37 kcal Atomic # 7 Polarization: -135.00 SS G_CDS: -8.00 Total: -143.00 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -0.16 Total: -54.21 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -76.30 1.77 -74.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666031721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.825 kcal (2) G-P(sol) polarization free energy of solvation -76.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds