Wall clock time and date at job start Tue Mar 31 2020 21:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47144 * 2 1 4 4 N 1.46497 * 109.47633 * 300.00077 * 3 2 1 5 5 C 1.36930 * 120.00392 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00238 * 0.02562 * 5 4 3 7 7 C 1.38816 * 120.00227 * 180.02562 * 5 4 3 8 8 N 1.31620 * 120.00369 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99745 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46913 * 90.00189 * 9 7 5 11 11 H 1.48506 * 109.47241 * 209.99890 * 9 7 5 12 12 H 1.48496 * 109.47333 * 329.99919 * 9 7 5 13 13 N 1.46499 * 109.46713 * 240.00075 * 2 1 3 14 14 C 1.34777 * 119.99919 * 173.97242 * 13 2 1 15 15 O 1.21280 * 120.00185 * 5.27749 * 14 13 2 16 16 C 1.50702 * 120.00265 * 185.27615 * 14 13 2 17 17 C 1.53001 * 109.47228 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46961 * 179.97438 * 17 16 14 19 19 H 1.09001 * 110.53053 * 57.83298 * 18 17 16 20 20 N 1.47308 * 110.60046 * 295.00088 * 18 17 16 21 21 C 1.34529 * 106.62035 * 241.47026 * 20 18 17 22 22 O 1.21534 * 123.77450 * 180.02562 * 21 20 18 23 23 N 1.33797 * 112.45548 * 0.02562 * 21 20 18 24 24 C 1.34771 * 111.64482 * 0.02562 * 23 21 20 25 25 O 1.21236 * 127.15913 * 180.02562 * 24 23 21 26 26 C 1.52999 * 109.47193 * 120.00211 * 2 1 3 27 27 C 1.53000 * 117.49820 * 123.11626 * 26 2 1 28 28 C 1.53001 * 117.49944 * 54.45769 * 26 2 1 29 29 H 1.08996 * 109.47450 * 59.99441 * 1 2 3 30 30 H 1.08998 * 109.47163 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46729 * 299.99732 * 1 2 3 32 32 H 1.09001 * 109.47002 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47286 * 60.00714 * 3 2 1 34 34 H 0.97004 * 119.99917 * 359.72669 * 4 3 2 35 35 H 0.96994 * 119.99988 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00549 * 353.97586 * 13 2 1 37 37 H 1.09003 * 109.46591 * 300.00120 * 16 14 13 38 38 H 1.08999 * 109.47001 * 59.99858 * 16 14 13 39 39 H 1.08993 * 109.46827 * 299.99739 * 17 16 14 40 40 H 1.08999 * 109.46894 * 59.99661 * 17 16 14 41 41 H 0.97000 * 126.69072 * 61.43989 * 20 18 17 42 42 H 0.96997 * 124.17655 * 179.97438 * 23 21 20 43 43 H 1.08997 * 115.55110 * 268.78842 * 26 2 1 44 44 H 1.09000 * 117.50100 * 0.02562 * 27 26 2 45 45 H 1.08999 * 117.49580 * 145.01800 * 27 26 2 46 46 H 1.08991 * 117.50275 * 214.98067 * 28 26 2 47 47 H 1.09004 * 117.49925 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1332 -1.1961 5 6 1.8821 3.4443 -1.4125 6 1 2.5030 3.9692 -0.7016 7 6 1.4190 4.0989 -2.5456 8 7 1.7370 5.3590 -2.7539 9 14 0.3444 3.1913 -3.7749 10 1 -1.0832 3.3551 -3.4000 11 1 0.5666 3.7490 -5.1332 12 1 0.6955 1.7485 -3.7687 13 7 2.0182 -0.6906 -1.1962 14 6 3.3372 -0.7087 -1.4727 15 8 4.1287 -0.2372 -0.6839 16 6 3.8287 -1.3149 -2.7619 17 6 5.3535 -1.2079 -2.8271 18 6 5.8525 -1.8240 -4.1358 19 1 5.3948 -1.3270 -4.9911 20 7 5.5746 -3.2703 -4.1669 21 6 6.7659 -3.8892 -4.2535 22 8 6.8983 -5.0964 -4.3002 23 7 7.7888 -3.0272 -4.2823 24 6 7.3643 -1.7498 -4.2164 25 8 8.0491 -0.7493 -4.2221 26 6 2.0400 -0.7213 1.2492 27 6 2.9746 -1.9151 1.0436 28 6 1.5317 -2.1422 1.5016 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 0.8900 34 1 0.9973 1.6607 -1.8367 35 1 1.4136 5.8162 -3.5459 36 1 1.3923 -1.1348 -1.7893 37 1 3.5362 -2.3640 -2.8047 38 1 3.3902 -0.7807 -3.6049 39 1 5.6463 -0.1590 -2.7841 40 1 5.7916 -1.7423 -1.9841 41 1 4.7027 -3.6938 -4.1314 42 1 8.7207 -3.2893 -4.3424 43 1 2.2163 -0.0880 2.1186 44 1 3.2264 -2.1864 0.0183 45 1 3.7655 -2.0674 1.7779 46 1 1.3740 -2.4438 2.5370 47 1 0.8343 -2.5633 0.7774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666037130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:06 Heat of formation + Delta-G solvation = -32.022324 kcal Electronic energy + Delta-G solvation = -30575.786536 eV Core-core repulsion = 26375.206821 eV Total energy + Delta-G solvation = -4200.579716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.67581 -40.52994 -38.92438 -37.62268 -36.64741 -35.19038 -34.82158 -33.48934 -32.48957 -31.48400 -30.06118 -28.02212 -26.37600 -24.12084 -23.51898 -22.99102 -22.20644 -21.72075 -21.19796 -20.46975 -19.20050 -18.68752 -17.80179 -17.34305 -17.17023 -16.88283 -16.30032 -16.05791 -15.84739 -15.45395 -15.18911 -14.68175 -14.51751 -14.43413 -13.87782 -13.76206 -13.70215 -13.21120 -12.92605 -12.78159 -12.32168 -12.26350 -12.17768 -12.01488 -11.62039 -11.42915 -11.30254 -11.18168 -11.07045 -10.91378 -10.85707 -10.72364 -10.57986 -10.24914 -10.23419 -9.98446 -9.89794 -9.59078 -9.38645 -8.84681 -8.73335 -7.17182 -5.74994 -3.09032 1.26460 2.06784 2.65468 2.75110 2.86134 3.26500 3.27210 3.32746 3.40035 3.63750 3.91985 4.29688 4.47357 4.56741 4.67305 4.69929 4.92453 4.94908 5.01776 5.02817 5.10423 5.26080 5.31532 5.42813 5.53865 5.57542 5.65059 5.66213 5.67271 5.70787 5.88561 5.92672 6.02035 6.07372 6.17917 6.24340 6.34668 6.35563 6.46628 6.53806 6.79656 7.01185 7.04504 7.70816 7.77052 8.03033 8.43457 8.47626 9.23419 9.95039 10.15871 11.44065 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009659 B = 0.003798 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.163289 B = 7370.356208 C = 9216.979278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.197 3.803 3 C 0.146 3.854 4 N -0.750 5.750 5 C -0.235 4.235 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.936 5.936 9 Si 0.884 3.116 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.281 1.281 13 N -0.721 5.721 14 C 0.520 3.480 15 O -0.516 6.516 16 C -0.143 4.143 17 C -0.102 4.102 18 C 0.091 3.909 19 H 0.134 0.866 20 N -0.721 5.721 21 C 0.705 3.295 22 O -0.549 6.549 23 N -0.681 5.681 24 C 0.529 3.471 25 O -0.456 6.456 26 C -0.142 4.142 27 C -0.156 4.156 28 C -0.186 4.186 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.031 0.969 34 H 0.357 0.643 35 H 0.258 0.742 36 H 0.394 0.606 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.440 0.560 42 H 0.432 0.568 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.718 -21.191 -0.367 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.111 3.889 3 C 0.018 3.982 4 N -0.396 5.396 5 C -0.365 4.365 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.584 5.584 9 Si 0.715 3.285 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.207 1.207 13 N -0.373 5.373 14 C 0.307 3.693 15 O -0.391 6.391 16 C -0.183 4.183 17 C -0.141 4.141 18 C -0.018 4.018 19 H 0.152 0.848 20 N -0.386 5.386 21 C 0.405 3.595 22 O -0.423 6.423 23 N -0.353 5.353 24 C 0.314 3.686 25 O -0.324 6.324 26 C -0.162 4.162 27 C -0.193 4.193 28 C -0.223 4.223 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.190 0.810 35 H 0.068 0.932 36 H 0.227 0.773 37 H 0.105 0.895 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.285 0.715 42 H 0.275 0.725 43 H 0.127 0.873 44 H 0.109 0.891 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.776 -20.619 0.216 20.963 hybrid contribution -1.137 -0.952 -1.344 2.001 sum 2.639 -21.571 -1.127 21.761 Atomic orbital electron populations 1.21996 0.93343 1.01490 1.03778 1.20114 0.93537 0.92692 0.82592 1.21073 0.99339 0.87378 0.90360 1.42604 1.62317 1.10985 1.23668 1.19072 1.25986 0.85643 1.05765 0.89323 1.24648 1.00751 0.95813 0.98131 1.69695 1.49997 1.09731 1.29000 0.86563 0.81148 0.78885 0.81903 1.21250 1.21862 1.20747 1.46044 1.07560 1.56673 1.27032 1.20104 0.82487 0.79296 0.87457 1.90724 1.54572 1.45015 1.48836 1.21658 0.96420 1.02212 0.98000 1.21536 0.94720 1.03957 0.93915 1.22255 0.93330 0.83088 1.03125 0.84839 1.45605 1.08083 1.06592 1.78348 1.15845 0.81474 0.84929 0.77288 1.91060 1.84808 1.10952 1.55443 1.44337 1.11774 1.08806 1.70355 1.20761 0.90773 0.82754 0.74295 1.90899 1.63203 1.33432 1.44836 1.22500 1.04098 0.90284 0.99299 1.22898 0.92355 1.02018 1.02034 1.22985 0.97937 0.99791 1.01619 0.91604 0.92633 0.90622 0.92319 0.95161 0.80969 0.93160 0.77307 0.89459 0.88105 0.87643 0.89825 0.71495 0.72547 0.87337 0.89075 0.89579 0.89363 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.19 37.16 0.30 -1.55 16 2 C 0.20 2.77 0.55 -131.82 -0.07 2.70 16 3 C 0.15 2.82 4.83 -4.05 -0.02 2.81 16 4 N -0.75 -17.04 4.98 -59.91 -0.30 -17.34 16 5 C -0.23 -6.58 10.47 -15.06 -0.16 -6.74 16 6 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 7 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 8 N -0.94 -29.28 13.97 55.49 0.78 -28.51 16 9 Si 0.88 21.26 27.74 -169.99 -4.72 16.55 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.08 6.51 56.52 0.37 -5.72 16 13 N -0.72 -8.85 4.19 -47.61 -0.20 -9.05 16 14 C 0.52 6.84 5.09 -10.98 -0.06 6.78 16 15 O -0.52 -8.70 11.90 5.56 0.07 -8.63 16 16 C -0.14 -1.24 5.60 -27.88 -0.16 -1.39 16 17 C -0.10 -0.95 4.27 -26.73 -0.11 -1.06 16 18 C 0.09 0.65 3.70 -68.21 -0.25 0.40 16 19 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 20 N -0.72 -4.55 5.94 -59.19 -0.35 -4.91 16 21 C 0.71 6.35 8.99 -88.01 -0.79 5.56 16 22 O -0.55 -6.88 18.04 5.34 0.10 -6.79 16 23 N -0.68 -5.33 5.70 -15.79 -0.09 -5.42 16 24 C 0.53 4.90 8.14 -10.55 -0.09 4.81 16 25 O -0.46 -5.85 18.02 5.60 0.10 -5.75 16 26 C -0.14 -1.82 4.82 -90.62 -0.44 -2.26 16 27 C -0.16 -1.87 8.30 -26.69 -0.22 -2.10 16 28 C -0.19 -1.92 9.68 -26.69 -0.26 -2.18 16 29 H 0.07 0.92 6.87 -51.93 -0.36 0.56 16 30 H 0.05 0.55 6.96 -51.93 -0.36 0.19 16 31 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.06 1.29 5.93 -51.93 -0.31 0.98 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.36 7.70 4.21 -40.82 -0.17 7.52 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.39 3.75 8.49 -40.82 -0.35 3.40 16 37 H 0.09 0.47 7.36 -51.93 -0.38 0.08 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.11 1.25 8.10 -51.93 -0.42 0.83 16 40 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 41 H 0.44 1.87 8.37 -40.82 -0.34 1.53 16 42 H 0.43 2.63 8.96 -40.82 -0.37 2.26 16 43 H 0.11 1.45 8.07 -51.93 -0.42 1.03 16 44 H 0.09 1.10 5.09 -51.93 -0.26 0.83 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.09 0.84 7.26 -51.93 -0.38 0.46 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -37.16 378.34 -7.99 -45.15 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -6.66 Total: 13.25 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -2.41 Total: 5.73 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -0.16 Total: -65.22 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: 0.26 Total: -21.16 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.72 Total: 16.55 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.16 -7.99 -45.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666037130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.127 kcal (2) G-P(sol) polarization free energy of solvation -37.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds