Wall clock time and date at job start Tue Mar 31 2020 21:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47144 * 2 1 4 4 N 1.46497 * 109.47633 * 300.00077 * 3 2 1 5 5 C 1.36930 * 120.00392 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00238 * 0.02562 * 5 4 3 7 7 C 1.38816 * 120.00227 * 180.02562 * 5 4 3 8 8 N 1.31620 * 120.00369 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99745 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46913 * 90.00189 * 9 7 5 11 11 H 1.48506 * 109.47241 * 209.99890 * 9 7 5 12 12 H 1.48496 * 109.47333 * 329.99919 * 9 7 5 13 13 N 1.46499 * 109.46713 * 240.00075 * 2 1 3 14 14 C 1.34777 * 119.99919 * 173.97242 * 13 2 1 15 15 O 1.21280 * 120.00185 * 5.27749 * 14 13 2 16 16 C 1.50702 * 120.00265 * 185.27615 * 14 13 2 17 17 C 1.53001 * 109.47228 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46961 * 179.97438 * 17 16 14 19 19 H 1.09001 * 110.53053 * 57.83298 * 18 17 16 20 20 N 1.47308 * 110.60046 * 295.00088 * 18 17 16 21 21 C 1.34529 * 106.62035 * 241.47026 * 20 18 17 22 22 O 1.21534 * 123.77450 * 180.02562 * 21 20 18 23 23 N 1.33797 * 112.45548 * 0.02562 * 21 20 18 24 24 C 1.34771 * 111.64482 * 0.02562 * 23 21 20 25 25 O 1.21236 * 127.15913 * 180.02562 * 24 23 21 26 26 C 1.52999 * 109.47193 * 120.00211 * 2 1 3 27 27 C 1.53000 * 117.49820 * 123.11626 * 26 2 1 28 28 C 1.53001 * 117.49944 * 54.45769 * 26 2 1 29 29 H 1.08996 * 109.47450 * 59.99441 * 1 2 3 30 30 H 1.08998 * 109.47163 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46729 * 299.99732 * 1 2 3 32 32 H 1.09001 * 109.47002 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47286 * 60.00714 * 3 2 1 34 34 H 0.97004 * 119.99917 * 359.72669 * 4 3 2 35 35 H 0.96994 * 119.99988 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00549 * 353.97586 * 13 2 1 37 37 H 1.09003 * 109.46591 * 300.00120 * 16 14 13 38 38 H 1.08999 * 109.47001 * 59.99858 * 16 14 13 39 39 H 1.08993 * 109.46827 * 299.99739 * 17 16 14 40 40 H 1.08999 * 109.46894 * 59.99661 * 17 16 14 41 41 H 0.97000 * 126.69072 * 61.43989 * 20 18 17 42 42 H 0.96997 * 124.17655 * 179.97438 * 23 21 20 43 43 H 1.08997 * 115.55110 * 268.78842 * 26 2 1 44 44 H 1.09000 * 117.50100 * 0.02562 * 27 26 2 45 45 H 1.08999 * 117.49580 * 145.01800 * 27 26 2 46 46 H 1.08991 * 117.50275 * 214.98067 * 28 26 2 47 47 H 1.09004 * 117.49925 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1332 -1.1961 5 6 1.8821 3.4443 -1.4125 6 1 2.5030 3.9692 -0.7016 7 6 1.4190 4.0989 -2.5456 8 7 1.7370 5.3590 -2.7539 9 14 0.3444 3.1913 -3.7749 10 1 -1.0832 3.3551 -3.4000 11 1 0.5666 3.7490 -5.1332 12 1 0.6955 1.7485 -3.7687 13 7 2.0182 -0.6906 -1.1962 14 6 3.3372 -0.7087 -1.4727 15 8 4.1287 -0.2372 -0.6839 16 6 3.8287 -1.3149 -2.7619 17 6 5.3535 -1.2079 -2.8271 18 6 5.8525 -1.8240 -4.1358 19 1 5.3948 -1.3270 -4.9911 20 7 5.5746 -3.2703 -4.1669 21 6 6.7659 -3.8892 -4.2535 22 8 6.8983 -5.0964 -4.3002 23 7 7.7888 -3.0272 -4.2823 24 6 7.3643 -1.7498 -4.2164 25 8 8.0491 -0.7493 -4.2221 26 6 2.0400 -0.7213 1.2492 27 6 2.9746 -1.9151 1.0436 28 6 1.5317 -2.1422 1.5016 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 0.8900 34 1 0.9973 1.6607 -1.8367 35 1 1.4136 5.8162 -3.5459 36 1 1.3923 -1.1348 -1.7893 37 1 3.5362 -2.3640 -2.8047 38 1 3.3902 -0.7807 -3.6049 39 1 5.6463 -0.1590 -2.7841 40 1 5.7916 -1.7423 -1.9841 41 1 4.7027 -3.6938 -4.1314 42 1 8.7207 -3.2893 -4.3424 43 1 2.2163 -0.0880 2.1186 44 1 3.2264 -2.1864 0.0183 45 1 3.7655 -2.0674 1.7779 46 1 1.3740 -2.4438 2.5370 47 1 0.8343 -2.5633 0.7774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666037130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:05 Heat of formation + Delta-G solvation = -63.814388 kcal Electronic energy + Delta-G solvation = -30577.165144 eV Core-core repulsion = 26375.206821 eV Total energy + Delta-G solvation = -4201.958323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.39145 -41.58686 -39.75514 -38.64511 -37.48501 -36.70155 -35.58763 -34.89648 -33.54701 -32.98318 -31.46219 -28.76187 -27.86316 -25.35500 -24.73409 -23.72237 -23.07993 -22.79658 -22.39695 -21.39660 -20.45307 -19.66445 -19.41017 -18.09832 -18.04871 -17.58886 -17.33121 -16.83735 -16.79970 -16.58768 -16.44845 -15.96169 -15.57002 -15.37164 -15.26649 -15.06404 -14.73342 -14.59969 -14.18797 -13.68782 -13.64789 -13.41643 -13.33278 -13.17797 -12.93596 -12.80020 -12.33609 -12.28143 -12.18689 -12.06750 -12.00815 -11.88744 -11.77247 -11.51397 -11.39316 -11.21816 -11.03260 -10.93369 -10.53974 -10.35258 -9.86217 -9.21001 -7.98771 -5.32225 0.50520 1.35194 1.42763 1.44862 1.52258 1.86166 1.93578 2.11654 2.34594 2.51995 2.93091 2.98923 3.32097 3.53346 3.58533 3.84097 3.90955 3.97453 4.00077 4.04660 4.26159 4.30065 4.31877 4.37573 4.41297 4.58217 4.66377 4.84076 4.90983 4.94135 4.96077 4.99111 5.06182 5.13195 5.15401 5.23270 5.31914 5.33737 5.35858 5.74911 5.80704 5.80915 5.85348 6.23495 6.36160 6.78238 7.11736 7.11900 7.53066 7.84903 8.11078 9.23727 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009659 B = 0.003798 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.163289 B = 7370.356208 C = 9216.979278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.208 3.792 3 C 0.146 3.854 4 N -0.740 5.740 5 C -0.234 4.234 6 H 0.039 0.961 7 C -0.069 4.069 8 N -0.990 5.990 9 Si 0.963 3.037 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.236 1.236 13 N -0.714 5.714 14 C 0.508 3.492 15 O -0.563 6.563 16 C -0.135 4.135 17 C -0.097 4.097 18 C 0.105 3.895 19 H 0.164 0.836 20 N -0.698 5.698 21 C 0.707 3.293 22 O -0.582 6.582 23 N -0.673 5.673 24 C 0.530 3.470 25 O -0.497 6.497 26 C -0.164 4.164 27 C -0.163 4.163 28 C -0.152 4.152 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.015 0.985 34 H 0.369 0.631 35 H 0.257 0.743 36 H 0.413 0.587 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.454 0.546 42 H 0.439 0.561 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.100 0.900 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.008 -25.075 -2.015 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.121 3.879 3 C 0.019 3.981 4 N -0.387 5.387 5 C -0.365 4.365 6 H 0.057 0.943 7 C -0.259 4.259 8 N -0.641 5.641 9 Si 0.788 3.212 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.159 1.159 13 N -0.367 5.367 14 C 0.296 3.704 15 O -0.441 6.441 16 C -0.174 4.174 17 C -0.136 4.136 18 C -0.004 4.004 19 H 0.181 0.819 20 N -0.364 5.364 21 C 0.406 3.594 22 O -0.459 6.459 23 N -0.344 5.344 24 C 0.316 3.684 25 O -0.368 6.368 26 C -0.184 4.184 27 C -0.201 4.201 28 C -0.189 4.189 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.033 0.967 34 H 0.203 0.797 35 H 0.066 0.934 36 H 0.250 0.750 37 H 0.150 0.850 38 H 0.136 0.864 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.302 0.698 42 H 0.282 0.718 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.095 0.905 46 H 0.119 0.881 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.022 -24.581 -1.418 24.643 hybrid contribution -0.177 0.356 -0.683 0.790 sum 0.844 -24.225 -2.101 24.331 Atomic orbital electron populations 1.21986 0.91465 1.03726 1.03035 1.19804 0.94689 0.89212 0.84186 1.21090 0.97559 0.91092 0.88395 1.42396 1.62250 1.09150 1.24897 1.18960 1.24897 0.87810 1.04839 0.94307 1.25619 1.02850 0.96771 1.00690 1.69928 1.51989 1.12229 1.29922 0.85311 0.78565 0.79731 0.77561 1.20376 1.22503 1.15931 1.45964 1.07838 1.56171 1.26715 1.20968 0.82346 0.78604 0.88450 1.90725 1.55754 1.46941 1.50673 1.21708 0.95336 1.04723 0.95676 1.21378 0.95627 1.02027 0.94576 1.22167 0.91736 0.83416 1.03065 0.81867 1.45471 1.07982 1.05836 1.77100 1.15899 0.82088 0.84425 0.76991 1.91049 1.85287 1.12398 1.57173 1.44284 1.12293 1.08335 1.69478 1.21062 0.91691 0.82398 0.73232 1.90886 1.64346 1.34731 1.46824 1.22372 1.06332 0.91356 0.98336 1.22900 0.93369 1.01685 1.02113 1.23073 0.96587 0.96292 1.02908 0.92668 0.88830 0.91112 0.95434 0.96678 0.79656 0.93426 0.75048 0.85014 0.86412 0.90854 0.90923 0.69806 0.71802 0.89069 0.88796 0.90511 0.88112 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.19 71.98 0.59 -2.53 16 2 C 0.21 5.50 0.55 3.60 0.00 5.50 16 3 C 0.15 5.78 4.83 86.38 0.42 6.20 16 4 N -0.74 -33.56 4.98 -343.46 -1.71 -35.27 16 5 C -0.23 -13.58 10.47 84.04 0.88 -12.70 16 6 H 0.04 2.58 8.06 -2.91 -0.02 2.55 16 7 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 8 N -0.99 -64.06 13.97 21.65 0.30 -63.76 16 9 Si 0.96 42.85 27.74 68.60 1.90 44.75 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.24 -8.63 6.51 99.48 0.65 -7.98 16 13 N -0.71 -15.22 4.19 -422.93 -1.77 -16.99 16 14 C 0.51 12.34 5.09 87.66 0.45 12.79 16 15 O -0.56 -19.20 11.90 -3.03 -0.04 -19.23 16 16 C -0.13 -1.84 5.60 29.85 0.17 -1.67 16 17 C -0.10 -1.64 4.27 30.60 0.13 -1.51 16 18 C 0.10 1.22 3.70 44.37 0.16 1.39 16 19 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 20 N -0.70 -6.43 5.94 -459.61 -2.73 -9.16 16 21 C 0.71 11.25 8.99 179.44 1.61 12.87 16 22 O -0.58 -13.63 18.04 -3.82 -0.07 -13.70 16 23 N -0.67 -9.77 5.70 -441.11 -2.52 -12.28 16 24 C 0.53 9.32 8.14 87.94 0.72 10.03 16 25 O -0.50 -12.91 18.02 -2.89 -0.05 -12.96 16 26 C -0.16 -4.01 4.82 -10.79 -0.05 -4.06 16 27 C -0.16 -3.64 8.30 30.62 0.25 -3.39 16 28 C -0.15 -2.57 9.68 30.62 0.30 -2.27 16 29 H 0.05 1.32 6.87 -2.39 -0.02 1.31 16 30 H 0.09 1.33 6.96 -2.39 -0.02 1.31 16 31 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.03 1.29 5.93 -2.39 -0.01 1.27 16 33 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.37 14.94 4.21 -92.71 -0.39 14.55 16 35 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 36 H 0.41 5.66 8.49 -92.71 -0.79 4.87 16 37 H 0.13 0.65 7.36 -2.39 -0.02 0.63 16 38 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 40 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 41 H 0.45 1.76 8.37 -92.71 -0.78 0.98 16 42 H 0.44 5.06 8.96 -92.71 -0.83 4.23 16 43 H 0.09 2.50 8.07 -2.39 -0.02 2.48 16 44 H 0.09 2.03 5.09 -2.39 -0.01 2.02 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 47 H 0.11 1.44 7.26 -2.38 -0.02 1.42 16 Total: -1.00 -87.71 378.34 -2.37 -90.08 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -1.79 Total: 31.43 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 6.09 Total: 17.08 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -8.42 Total: -137.45 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -0.16 Total: -45.89 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.90 Total: 44.75 kcal Total: -87.71 -2.37 -90.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666037130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.265 kcal (2) G-P(sol) polarization free energy of solvation -87.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds