Wall clock time and date at job start Tue Mar 31 2020 21:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47230 * 2 1 4 4 N 1.46500 * 109.46952 * 300.00404 * 3 2 1 5 5 C 1.36938 * 119.99657 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00037 * 359.97438 * 5 4 3 7 7 C 1.38807 * 119.99350 * 179.71940 * 5 4 3 8 8 N 1.31613 * 120.00688 * 0.27818 * 7 5 4 9 9 Si 1.86805 * 119.99412 * 180.27474 * 7 5 4 10 10 H 1.48493 * 109.47490 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47116 * 120.00592 * 9 7 5 12 12 H 1.48506 * 109.47141 * 239.99917 * 9 7 5 13 13 N 1.46495 * 109.47154 * 239.99968 * 2 1 3 14 14 C 1.34781 * 120.00178 * 173.96216 * 13 2 1 15 15 O 1.21277 * 119.99821 * 5.26803 * 14 13 2 16 16 C 1.50699 * 120.00221 * 185.27148 * 14 13 2 17 17 C 1.52997 * 109.47270 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47011 * 180.02562 * 17 16 14 19 19 H 1.08998 * 110.52934 * 304.29391 * 18 17 16 20 20 N 1.47309 * 110.60173 * 67.12964 * 18 17 16 21 21 C 1.34521 * 106.62235 * 118.52771 * 20 18 17 22 22 O 1.21537 * 123.77518 * 180.02562 * 21 20 18 23 23 N 1.33791 * 112.45707 * 359.97438 * 21 20 18 24 24 C 1.35122 * 111.68632 * 0.09578 * 23 21 20 25 25 O 1.21239 * 127.33734 * 179.97438 * 24 23 21 26 26 C 1.52998 * 109.46997 * 120.00085 * 2 1 3 27 27 C 1.53004 * 117.49732 * 123.08363 * 26 2 1 28 28 C 1.52998 * 117.50019 * 54.46201 * 26 2 1 29 29 H 1.08998 * 109.47349 * 59.99741 * 1 2 3 30 30 H 1.09001 * 109.47384 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47022 * 300.00083 * 1 2 3 32 32 H 1.08994 * 109.46725 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46500 * 60.00075 * 3 2 1 34 34 H 0.97004 * 120.00198 * 359.97438 * 4 3 2 35 35 H 0.96995 * 120.00272 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00445 * 353.96520 * 13 2 1 37 37 H 1.09005 * 109.46778 * 300.00060 * 16 14 13 38 38 H 1.09006 * 109.47182 * 59.99885 * 16 14 13 39 39 H 1.08997 * 109.46618 * 299.99734 * 17 16 14 40 40 H 1.08997 * 109.47215 * 59.99631 * 17 16 14 41 41 H 0.96998 * 126.68498 * 298.48955 * 20 18 17 42 42 H 0.96999 * 124.17826 * 180.02562 * 23 21 20 43 43 H 1.08997 * 115.54883 * 268.78342 * 26 2 1 44 44 H 1.08998 * 117.49702 * 359.97438 * 27 26 2 45 45 H 1.09005 * 117.49854 * 145.02032 * 27 26 2 46 46 H 1.09010 * 117.49525 * 214.97839 * 28 26 2 47 47 H 1.08998 * 117.49656 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8829 3.4441 -1.4131 6 1 2.5038 3.9689 -0.7022 7 6 1.4249 4.0966 -2.5493 8 7 0.6678 3.4572 -3.4154 9 14 1.8831 5.8826 -2.8491 10 1 2.7356 6.3688 -1.7347 11 1 2.6287 5.9943 -4.1285 12 1 0.6486 6.7049 -2.9223 13 7 2.0183 -0.6906 -1.1961 14 6 3.3373 -0.7085 -1.4727 15 8 4.1286 -0.2366 -0.6841 16 6 3.8287 -1.3148 -2.7618 17 6 5.3535 -1.2076 -2.8272 18 6 5.8524 -1.8226 -4.1363 19 1 5.5043 -2.8510 -4.2326 20 7 5.4128 -1.0165 -5.2883 21 6 6.5282 -0.5795 -5.9003 22 8 6.5237 0.1193 -6.8946 23 7 7.6431 -0.9992 -5.2913 24 6 7.3652 -1.7617 -4.2110 25 8 8.1572 -2.2861 -3.4576 26 6 2.0399 -0.7213 1.2492 27 6 2.9738 -1.9156 1.0436 28 6 1.5317 -2.1421 1.5016 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 0.8900 34 1 0.9941 1.6617 -1.8348 35 1 0.3481 3.9132 -4.2096 36 1 1.3924 -1.1350 -1.7892 37 1 3.5364 -2.3640 -2.8045 38 1 3.3901 -0.7809 -3.6049 39 1 5.6461 -0.1585 -2.7843 40 1 5.7918 -1.7418 -1.9841 41 1 4.4974 -0.8365 -5.5540 42 1 8.5407 -0.7837 -5.5891 43 1 2.2163 -0.0880 2.1186 44 1 3.2246 -2.1877 0.0183 45 1 3.7649 -2.0682 1.7778 46 1 1.3740 -2.4437 2.5372 47 1 0.8337 -2.5629 0.7778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666037131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:10 Heat of formation + Delta-G solvation = -37.509547 kcal Electronic energy + Delta-G solvation = -30581.150584 eV Core-core repulsion = 26380.332925 eV Total energy + Delta-G solvation = -4200.817660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.51733 -40.38091 -38.81546 -37.49200 -36.50626 -35.00814 -34.67627 -33.37314 -32.37053 -31.30724 -29.62506 -27.88630 -26.02677 -24.04156 -23.60066 -22.84247 -22.10893 -21.61542 -21.34332 -20.34409 -19.00602 -18.58045 -17.33226 -17.16211 -17.02130 -16.71252 -16.19279 -15.90584 -15.64334 -15.42509 -15.21538 -14.45779 -14.36000 -14.20376 -14.02820 -13.76707 -13.32799 -12.96905 -12.95586 -12.72257 -12.19612 -12.12747 -12.01660 -11.86560 -11.37016 -11.22014 -11.13583 -11.07059 -10.88259 -10.79368 -10.74535 -10.60234 -10.47800 -10.21035 -10.04986 -9.85003 -9.72101 -9.68024 -9.27083 -8.78319 -8.58680 -6.84820 -5.75825 -3.01483 1.34107 2.20229 2.81846 2.89787 2.98953 3.41798 3.45141 3.51720 3.53048 3.73214 4.01998 4.39071 4.52774 4.60644 4.80595 4.85963 5.01581 5.07571 5.13741 5.15188 5.22292 5.39681 5.44765 5.56478 5.62698 5.70750 5.75507 5.76701 5.81962 5.97209 6.00364 6.03545 6.15899 6.27416 6.28097 6.36778 6.54944 6.58545 6.62184 6.69474 6.91561 7.12575 7.14191 7.74411 7.87399 7.94399 8.44371 8.61951 9.56186 10.13726 10.49550 11.47493 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007522 B = 0.004433 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3721.396411 B = 6314.349191 C = 9248.533616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.201 3.799 3 C 0.141 3.859 4 N -0.726 5.726 5 C -0.229 4.229 6 H 0.068 0.932 7 C -0.015 4.015 8 N -0.937 5.937 9 Si 0.902 3.098 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 N -0.716 5.716 14 C 0.523 3.477 15 O -0.523 6.523 16 C -0.142 4.142 17 C -0.103 4.103 18 C 0.092 3.908 19 H 0.131 0.869 20 N -0.719 5.719 21 C 0.704 3.296 22 O -0.543 6.543 23 N -0.682 5.682 24 C 0.532 3.468 25 O -0.465 6.465 26 C -0.143 4.143 27 C -0.156 4.156 28 C -0.187 4.187 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.021 0.979 34 H 0.381 0.619 35 H 0.253 0.747 36 H 0.395 0.605 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.444 0.556 42 H 0.432 0.568 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 -18.051 1.335 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.115 3.885 3 C 0.013 3.987 4 N -0.370 5.370 5 C -0.360 4.360 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.586 5.586 9 Si 0.734 3.266 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.367 5.367 14 C 0.309 3.691 15 O -0.399 6.399 16 C -0.182 4.182 17 C -0.142 4.142 18 C -0.017 4.017 19 H 0.148 0.852 20 N -0.385 5.385 21 C 0.403 3.597 22 O -0.416 6.416 23 N -0.353 5.353 24 C 0.317 3.683 25 O -0.334 6.334 26 C -0.162 4.162 27 C -0.193 4.193 28 C -0.224 4.224 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.215 0.785 35 H 0.062 0.938 36 H 0.228 0.772 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.289 0.711 42 H 0.274 0.726 43 H 0.124 0.876 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.950 -17.454 1.861 18.534 hybrid contribution -0.339 0.944 -1.006 1.421 sum 5.611 -16.510 0.855 17.459 Atomic orbital electron populations 1.21978 0.93245 1.01262 1.04014 1.20042 0.93593 0.92528 0.82374 1.21097 0.98878 0.87818 0.90918 1.42252 1.61239 1.10452 1.23093 1.19269 1.24946 0.87706 1.04074 0.91385 1.24645 1.00794 0.98128 0.97450 1.69637 1.39938 1.36025 1.13046 0.86171 0.77519 0.85250 0.77645 1.20646 1.21952 1.21971 1.45977 1.07444 1.56373 1.26905 1.20069 0.82538 0.79181 0.87320 1.90702 1.54716 1.45442 1.49030 1.21648 0.96159 1.02494 0.97924 1.21536 0.95035 1.03643 0.93939 1.22193 0.91652 0.98676 0.89159 0.85198 1.45615 1.08576 1.54816 1.29449 1.15849 0.81196 0.79884 0.82758 1.91078 1.85535 1.39784 1.25205 1.44404 1.11228 1.50236 1.29428 1.20856 0.91312 0.76725 0.79400 1.90855 1.55595 1.44605 1.42322 1.22524 1.04061 0.90232 0.99417 1.22887 0.92280 1.02080 1.02049 1.22972 0.97987 0.99926 1.01526 0.90774 0.92939 0.91131 0.93071 0.96170 0.78467 0.93762 0.77184 0.88961 0.88472 0.89380 0.88406 0.71068 0.72619 0.87613 0.88989 0.89664 0.89499 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.19 37.15 0.30 -1.74 16 2 C 0.20 3.03 0.55 -131.82 -0.07 2.96 16 3 C 0.14 2.87 4.83 -4.04 -0.02 2.85 16 4 N -0.73 -17.62 5.17 -59.91 -0.31 -17.93 16 5 C -0.23 -6.38 9.99 -15.06 -0.15 -6.53 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 8 N -0.94 -27.50 13.06 55.49 0.72 -26.78 16 9 Si 0.90 22.71 29.55 -169.99 -5.02 17.69 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 N -0.72 -9.49 4.19 -47.61 -0.20 -9.69 16 14 C 0.52 7.32 5.09 -10.98 -0.06 7.26 16 15 O -0.52 -9.21 11.91 5.56 0.07 -9.14 16 16 C -0.14 -1.35 5.61 -27.88 -0.16 -1.50 16 17 C -0.10 -1.01 4.26 -26.73 -0.11 -1.13 16 18 C 0.09 0.71 3.67 -68.20 -0.25 0.46 16 19 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 20 N -0.72 -6.33 5.98 -59.19 -0.35 -6.69 16 21 C 0.70 8.07 9.00 -88.02 -0.79 7.28 16 22 O -0.54 -8.46 18.04 5.33 0.10 -8.37 16 23 N -0.68 -6.33 5.72 -15.71 -0.09 -6.42 16 24 C 0.53 5.14 8.17 -10.40 -0.08 5.05 16 25 O -0.47 -5.71 18.02 5.59 0.10 -5.61 16 26 C -0.14 -1.94 4.83 -90.62 -0.44 -2.38 16 27 C -0.16 -1.96 8.30 -26.73 -0.22 -2.18 16 28 C -0.19 -2.05 9.68 -26.73 -0.26 -2.31 16 29 H 0.07 1.19 6.86 -51.93 -0.36 0.84 16 30 H 0.05 0.58 6.96 -51.93 -0.36 0.22 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 1.17 5.93 -51.93 -0.31 0.86 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 9.41 6.35 -40.82 -0.26 9.15 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.39 4.25 8.49 -40.82 -0.35 3.91 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.92 7.47 -51.93 -0.39 0.53 16 39 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 40 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.44 3.45 8.45 -40.82 -0.34 3.10 16 42 H 0.43 3.22 8.96 -40.82 -0.37 2.86 16 43 H 0.11 1.50 8.07 -51.93 -0.42 1.08 16 44 H 0.09 1.15 5.09 -51.93 -0.26 0.89 16 45 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 47 H 0.09 0.90 7.25 -51.93 -0.38 0.53 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -36.19 381.70 -8.36 -44.54 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -6.71 Total: 15.07 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -2.40 Total: 7.58 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -0.23 Total: -67.51 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.26 Total: -23.12 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.19 -8.36 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666037131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.034 kcal (2) G-P(sol) polarization free energy of solvation -36.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds