Wall clock time and date at job start Tue Mar 31 2020 21:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47230 * 2 1 4 4 N 1.46500 * 109.46952 * 300.00404 * 3 2 1 5 5 C 1.36938 * 119.99657 * 180.02562 * 4 3 2 6 6 H 1.07997 * 120.00037 * 359.97438 * 5 4 3 7 7 C 1.38807 * 119.99350 * 179.71940 * 5 4 3 8 8 N 1.31613 * 120.00688 * 0.27818 * 7 5 4 9 9 Si 1.86805 * 119.99412 * 180.27474 * 7 5 4 10 10 H 1.48493 * 109.47490 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47116 * 120.00592 * 9 7 5 12 12 H 1.48506 * 109.47141 * 239.99917 * 9 7 5 13 13 N 1.46495 * 109.47154 * 239.99968 * 2 1 3 14 14 C 1.34781 * 120.00178 * 173.96216 * 13 2 1 15 15 O 1.21277 * 119.99821 * 5.26803 * 14 13 2 16 16 C 1.50699 * 120.00221 * 185.27148 * 14 13 2 17 17 C 1.52997 * 109.47270 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47011 * 180.02562 * 17 16 14 19 19 H 1.08998 * 110.52934 * 304.29391 * 18 17 16 20 20 N 1.47309 * 110.60173 * 67.12964 * 18 17 16 21 21 C 1.34521 * 106.62235 * 118.52771 * 20 18 17 22 22 O 1.21537 * 123.77518 * 180.02562 * 21 20 18 23 23 N 1.33791 * 112.45707 * 359.97438 * 21 20 18 24 24 C 1.35122 * 111.68632 * 0.09578 * 23 21 20 25 25 O 1.21239 * 127.33734 * 179.97438 * 24 23 21 26 26 C 1.52998 * 109.46997 * 120.00085 * 2 1 3 27 27 C 1.53004 * 117.49732 * 123.08363 * 26 2 1 28 28 C 1.52998 * 117.50019 * 54.46201 * 26 2 1 29 29 H 1.08998 * 109.47349 * 59.99741 * 1 2 3 30 30 H 1.09001 * 109.47384 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47022 * 300.00083 * 1 2 3 32 32 H 1.08994 * 109.46725 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46500 * 60.00075 * 3 2 1 34 34 H 0.97004 * 120.00198 * 359.97438 * 4 3 2 35 35 H 0.96995 * 120.00272 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00445 * 353.96520 * 13 2 1 37 37 H 1.09005 * 109.46778 * 300.00060 * 16 14 13 38 38 H 1.09006 * 109.47182 * 59.99885 * 16 14 13 39 39 H 1.08997 * 109.46618 * 299.99734 * 17 16 14 40 40 H 1.08997 * 109.47215 * 59.99631 * 17 16 14 41 41 H 0.96998 * 126.68498 * 298.48955 * 20 18 17 42 42 H 0.96999 * 124.17826 * 180.02562 * 23 21 20 43 43 H 1.08997 * 115.54883 * 268.78342 * 26 2 1 44 44 H 1.08998 * 117.49702 * 359.97438 * 27 26 2 45 45 H 1.09005 * 117.49854 * 145.02032 * 27 26 2 46 46 H 1.09010 * 117.49525 * 214.97839 * 28 26 2 47 47 H 1.08998 * 117.49656 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8829 3.4441 -1.4131 6 1 2.5038 3.9689 -0.7022 7 6 1.4249 4.0966 -2.5493 8 7 0.6678 3.4572 -3.4154 9 14 1.8831 5.8826 -2.8491 10 1 2.7356 6.3688 -1.7347 11 1 2.6287 5.9943 -4.1285 12 1 0.6486 6.7049 -2.9223 13 7 2.0183 -0.6906 -1.1961 14 6 3.3373 -0.7085 -1.4727 15 8 4.1286 -0.2366 -0.6841 16 6 3.8287 -1.3148 -2.7618 17 6 5.3535 -1.2076 -2.8272 18 6 5.8524 -1.8226 -4.1363 19 1 5.5043 -2.8510 -4.2326 20 7 5.4128 -1.0165 -5.2883 21 6 6.5282 -0.5795 -5.9003 22 8 6.5237 0.1193 -6.8946 23 7 7.6431 -0.9992 -5.2913 24 6 7.3652 -1.7617 -4.2110 25 8 8.1572 -2.2861 -3.4576 26 6 2.0399 -0.7213 1.2492 27 6 2.9738 -1.9156 1.0436 28 6 1.5317 -2.1421 1.5016 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 0.8900 34 1 0.9941 1.6617 -1.8348 35 1 0.3481 3.9132 -4.2096 36 1 1.3924 -1.1350 -1.7892 37 1 3.5364 -2.3640 -2.8045 38 1 3.3901 -0.7809 -3.6049 39 1 5.6461 -0.1585 -2.7843 40 1 5.7918 -1.7418 -1.9841 41 1 4.4974 -0.8365 -5.5540 42 1 8.5407 -0.7837 -5.5891 43 1 2.2163 -0.0880 2.1186 44 1 3.2246 -2.1877 0.0183 45 1 3.7649 -2.0682 1.7778 46 1 1.3740 -2.4437 2.5372 47 1 0.8337 -2.5629 0.7778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666037131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:09 Heat of formation + Delta-G solvation = -67.481451 kcal Electronic energy + Delta-G solvation = -30582.450264 eV Core-core repulsion = 26380.332925 eV Total energy + Delta-G solvation = -4202.117339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.35015 -41.51594 -39.73691 -38.58162 -37.47198 -36.56419 -35.55046 -34.85288 -33.43182 -32.79770 -31.15751 -28.72144 -27.61422 -25.56448 -24.74606 -23.70788 -23.03552 -22.87284 -22.37398 -21.35040 -20.23139 -19.42649 -19.24600 -18.03968 -18.00302 -17.55852 -17.28626 -16.89799 -16.82960 -16.54120 -16.26656 -16.12928 -15.38736 -15.32628 -15.10141 -15.01229 -14.91954 -14.57418 -13.90942 -13.78173 -13.50424 -13.36019 -13.17046 -13.00133 -12.91074 -12.82995 -12.33663 -12.22513 -12.19217 -12.07722 -12.00552 -11.91004 -11.75209 -11.50888 -11.38188 -11.17370 -11.00873 -10.90186 -10.52192 -10.29282 -9.78517 -8.90567 -7.95559 -5.19741 0.50974 1.41300 1.42834 1.44810 1.53094 1.91635 1.94135 2.15590 2.41718 2.54359 2.94168 3.04244 3.38322 3.57713 3.72741 3.87185 3.95554 4.05257 4.06240 4.22390 4.27215 4.37161 4.40819 4.42578 4.46755 4.62031 4.70045 4.87524 4.93969 4.97759 4.99784 5.02795 5.06105 5.16283 5.17743 5.26213 5.36196 5.37993 5.41541 5.48903 5.78488 5.84170 5.86263 6.28483 6.35836 6.83734 7.09740 7.36502 7.57510 8.11337 8.41155 9.27238 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007522 B = 0.004433 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3721.396411 B = 6314.349191 C = 9248.533616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.211 3.789 3 C 0.142 3.858 4 N -0.726 5.726 5 C -0.239 4.239 6 H 0.058 0.942 7 C -0.063 4.063 8 N -0.958 5.958 9 Si 0.958 3.042 10 H -0.277 1.277 11 H -0.295 1.295 12 H -0.289 1.289 13 N -0.709 5.709 14 C 0.511 3.489 15 O -0.566 6.566 16 C -0.134 4.134 17 C -0.096 4.096 18 C 0.106 3.894 19 H 0.179 0.821 20 N -0.706 5.706 21 C 0.702 3.298 22 O -0.589 6.589 23 N -0.675 5.675 24 C 0.534 3.466 25 O -0.491 6.491 26 C -0.165 4.165 27 C -0.160 4.160 28 C -0.154 4.154 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.025 0.975 33 H 0.009 0.991 34 H 0.379 0.621 35 H 0.251 0.749 36 H 0.410 0.590 37 H 0.143 0.857 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.096 0.904 41 H 0.450 0.550 42 H 0.438 0.562 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 -20.497 1.310 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.124 3.876 3 C 0.015 3.985 4 N -0.370 5.370 5 C -0.372 4.372 6 H 0.076 0.924 7 C -0.256 4.256 8 N -0.610 5.610 9 Si 0.789 3.211 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.216 1.216 13 N -0.362 5.362 14 C 0.299 3.701 15 O -0.445 6.445 16 C -0.173 4.173 17 C -0.135 4.135 18 C -0.002 4.002 19 H 0.196 0.804 20 N -0.372 5.372 21 C 0.401 3.599 22 O -0.466 6.466 23 N -0.346 5.346 24 C 0.321 3.679 25 O -0.361 6.361 26 C -0.185 4.185 27 C -0.197 4.197 28 C -0.191 4.191 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.027 0.973 34 H 0.213 0.787 35 H 0.060 0.940 36 H 0.246 0.754 37 H 0.161 0.839 38 H 0.119 0.881 39 H 0.068 0.932 40 H 0.115 0.885 41 H 0.297 0.703 42 H 0.281 0.719 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.120 0.880 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.876 -19.935 1.859 20.607 hybrid contribution 0.032 1.727 -0.902 1.948 sum 4.908 -18.209 0.958 18.883 Atomic orbital electron populations 1.21907 0.92014 1.03178 1.02584 1.19750 0.94286 0.89467 0.84120 1.21120 0.97238 0.91325 0.88842 1.42278 1.61011 1.09551 1.24135 1.19498 1.24429 0.89351 1.03879 0.92395 1.25268 1.01321 1.01479 0.97512 1.69739 1.40807 1.37132 1.13273 0.85294 0.77206 0.81408 0.77217 1.20155 1.22216 1.21596 1.45917 1.07773 1.55874 1.26600 1.20913 0.82297 0.78542 0.88331 1.90693 1.55736 1.47265 1.50770 1.21688 0.95365 1.05161 0.95128 1.21396 0.95592 1.01450 0.95025 1.22288 0.90036 1.00520 0.87390 0.80379 1.45619 1.08337 1.54133 1.29076 1.15991 0.82049 0.79469 0.82371 1.91048 1.86218 1.41942 1.27349 1.44338 1.11296 1.49739 1.29181 1.21109 0.92090 0.75992 0.78755 1.90852 1.56519 1.45686 1.43064 1.22378 1.06523 0.91361 0.98253 1.22898 0.93255 1.01329 1.02217 1.23057 0.96787 0.96389 1.02862 0.93199 0.89262 0.91536 0.95728 0.97313 0.78674 0.94014 0.75396 0.83945 0.88072 0.93211 0.88515 0.70270 0.71872 0.89041 0.88766 0.90129 0.87988 0.87432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.19 71.98 0.59 -3.05 16 2 C 0.21 6.20 0.55 3.61 0.00 6.20 16 3 C 0.14 5.96 4.83 86.38 0.42 6.38 16 4 N -0.73 -35.93 5.17 -343.45 -1.78 -37.70 16 5 C -0.24 -13.61 9.99 84.03 0.84 -12.77 16 6 H 0.06 3.34 7.83 -2.91 -0.02 3.32 16 7 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 8 N -0.96 -56.45 13.06 21.65 0.28 -56.16 16 9 Si 0.96 47.07 29.55 68.60 2.03 49.10 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 13 N -0.71 -17.62 4.19 -422.93 -1.77 -19.39 16 14 C 0.51 13.71 5.09 87.66 0.45 14.15 16 15 O -0.57 -20.16 11.91 -3.02 -0.04 -20.19 16 16 C -0.13 -2.18 5.61 29.85 0.17 -2.01 16 17 C -0.10 -1.74 4.26 30.59 0.13 -1.61 16 18 C 0.11 1.35 3.67 44.37 0.16 1.51 16 19 H 0.18 0.73 8.14 -2.39 -0.02 0.71 16 20 N -0.71 -11.18 5.98 -459.62 -2.75 -13.93 16 21 C 0.70 15.68 9.00 179.44 1.61 17.30 16 22 O -0.59 -18.51 18.04 -3.83 -0.07 -18.58 16 23 N -0.67 -12.13 5.72 -440.67 -2.52 -14.65 16 24 C 0.53 9.61 8.17 87.88 0.72 10.32 16 25 O -0.49 -11.57 18.02 -2.90 -0.05 -11.62 16 26 C -0.17 -4.32 4.83 -10.79 -0.05 -4.37 16 27 C -0.16 -3.71 8.30 30.60 0.25 -3.46 16 28 C -0.15 -2.85 9.68 30.59 0.30 -2.56 16 29 H 0.05 1.56 6.86 -2.39 -0.02 1.54 16 30 H 0.09 1.66 6.96 -2.39 -0.02 1.64 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.02 1.18 5.93 -2.39 -0.01 1.17 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.38 18.89 6.35 -92.70 -0.59 18.31 16 35 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.41 7.64 8.49 -92.71 -0.79 6.85 16 37 H 0.14 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.10 1.64 7.47 -2.38 -0.02 1.63 16 39 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 40 H 0.10 1.84 8.10 -2.39 -0.02 1.82 16 41 H 0.45 6.07 8.45 -92.71 -0.78 5.29 16 42 H 0.44 6.48 8.96 -92.71 -0.83 5.65 16 43 H 0.09 2.62 8.07 -2.39 -0.02 2.60 16 44 H 0.09 2.14 5.09 -2.39 -0.01 2.13 16 45 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.11 1.64 7.25 -2.39 -0.02 1.62 16 Total: -1.00 -81.54 381.70 -2.54 -84.09 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -1.93 Total: 36.13 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: 6.05 Total: 22.91 kcal Atomic # 7 Polarization: -133.30 SS G_CDS: -8.53 Total: -141.83 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.16 Total: -50.40 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -81.54 -2.54 -84.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666037131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.605 kcal (2) G-P(sol) polarization free energy of solvation -81.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds