Wall clock time and date at job start Tue Mar 31 2020 21:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47333 * 2 1 4 4 N 1.46503 * 109.47215 * 120.00277 * 2 1 3 5 5 C 1.36161 * 119.85637 * 119.99948 * 4 2 1 6 6 C 1.35545 * 119.25842 * 179.97438 * 5 4 2 7 7 C 1.50703 * 120.49611 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47085 * 95.00713 * 7 6 5 9 9 C 1.34780 * 120.00187 * 179.97438 * 8 7 6 10 10 O 1.21590 * 119.99402 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00074 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99794 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47205 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.47569 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47776 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99704 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00453 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00317 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99966 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46928 * 90.00226 * 19 17 15 21 21 H 1.48504 * 109.46824 * 210.00031 * 19 17 15 22 22 H 1.48494 * 109.47252 * 330.00021 * 19 17 15 23 23 C 1.40734 * 118.99798 * 0.02562 * 6 5 4 24 24 O 1.35160 * 120.16225 * 180.02562 * 23 6 5 25 25 N 1.32429 * 119.67329 * 359.97438 * 23 6 5 26 26 C 1.33271 * 120.72637 * 359.97438 * 25 23 6 27 27 O 1.21977 * 119.47328 * 180.02562 * 26 25 23 28 28 H 1.09002 * 109.47108 * 60.00158 * 1 2 3 29 29 H 1.09006 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47440 * 299.99862 * 1 2 3 31 31 H 1.09003 * 109.47440 * 240.00138 * 2 1 3 32 32 H 1.08998 * 109.47568 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47153 * 300.00458 * 3 2 1 34 34 H 1.09003 * 109.47200 * 59.99992 * 3 2 1 35 35 H 1.07999 * 120.37040 * 0.27835 * 5 4 2 36 36 H 1.09007 * 109.46491 * 215.00043 * 7 6 5 37 37 H 1.08994 * 109.47204 * 335.00231 * 7 6 5 38 38 H 0.97000 * 119.99853 * 359.97438 * 8 7 6 39 39 H 0.96997 * 120.00226 * 359.97438 * 11 9 8 40 40 H 1.08999 * 109.47053 * 299.99773 * 12 11 9 41 41 H 1.08998 * 109.47652 * 59.99940 * 12 11 9 42 42 H 1.08999 * 109.47046 * 299.99920 * 13 12 11 43 43 H 1.09002 * 109.47233 * 59.99431 * 13 12 11 44 44 H 1.09008 * 109.47126 * 299.99880 * 14 13 12 45 45 H 1.09002 * 109.47181 * 59.99554 * 14 13 12 46 46 H 0.96997 * 120.00311 * 180.02562 * 18 17 15 47 47 H 0.96702 * 113.99962 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8009 -1.7975 1.0678 6 6 3.2465 -2.4267 2.1825 7 6 4.1148 -3.6536 2.0729 8 7 5.5243 -3.2634 2.1573 9 6 6.4889 -4.2018 2.0828 10 8 6.1892 -5.3722 1.9460 11 7 7.7857 -3.8428 2.1600 12 6 8.8341 -4.8628 2.0796 13 6 10.2058 -4.1943 2.1920 14 6 11.3007 -5.2596 2.1087 15 6 12.6517 -4.6013 2.2201 16 1 12.7223 -3.5301 2.3381 17 6 13.7976 -5.3664 2.1713 18 7 13.7117 -6.6709 2.0282 19 14 15.4723 -4.5501 2.3087 20 1 15.8750 -4.4839 3.7365 21 1 16.4726 -5.3417 1.5484 22 1 15.4005 -3.1760 1.7504 23 6 2.8861 -1.9170 3.4438 24 8 3.3177 -2.5256 4.5709 25 7 2.1228 -0.8376 3.5210 26 6 1.6922 -0.2277 2.4170 27 8 0.9906 0.7653 2.5147 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.0678 -2.1670 0.0886 36 1 3.8784 -4.3398 2.8862 37 1 3.9304 -4.1450 1.1176 38 1 5.7633 -2.3298 2.2669 39 1 8.0248 -2.9090 2.2688 40 1 8.7096 -5.5767 2.8937 41 1 8.7616 -5.3840 1.1250 42 1 10.3300 -3.4806 1.3776 43 1 10.2786 -3.6727 3.1464 44 1 11.1764 -5.9730 2.9234 45 1 11.2280 -5.7815 1.1545 46 1 14.5179 -7.2092 1.9943 47 1 3.0180 -2.1013 5.3865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668606253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:06 Heat of formation + Delta-G solvation = -74.076634 kcal Electronic energy + Delta-G solvation = -28429.330110 eV Core-core repulsion = 24226.926782 eV Total energy + Delta-G solvation = -4202.403327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.47741 -39.91885 -39.34126 -37.38381 -36.37968 -35.64731 -34.79811 -33.33156 -32.76048 -31.72523 -30.77906 -27.83207 -27.11423 -25.92106 -25.32399 -24.20340 -22.94966 -21.43390 -20.87879 -20.40486 -20.23342 -18.80445 -18.26875 -17.16434 -16.87566 -16.53438 -16.19803 -15.94080 -15.60537 -15.07056 -14.87845 -14.81389 -14.58234 -14.46015 -14.23869 -14.18796 -14.08981 -13.95379 -13.44726 -13.06078 -12.67504 -12.61444 -12.28788 -12.25358 -11.93554 -11.81593 -11.76020 -11.68939 -11.05722 -10.90959 -10.73006 -10.59997 -10.59138 -10.18327 -10.13805 -9.86389 -9.46709 -9.26305 -9.13925 -9.03856 -8.62151 -8.37605 -6.02280 -4.05358 0.10606 1.02110 1.81858 2.67070 2.83546 3.27250 3.30219 3.35060 3.36704 3.39314 3.66110 3.81049 4.02597 4.21370 4.32784 4.38373 4.43339 4.45588 4.53710 4.65995 5.05595 5.07723 5.12263 5.22906 5.33477 5.39360 5.45586 5.53057 5.69819 5.70186 5.78345 5.81163 5.88882 6.17786 6.33418 6.51832 6.59057 6.61960 6.78682 7.01717 7.04247 7.29646 7.63419 7.68703 7.76279 7.96629 8.11587 8.37563 8.72439 9.01350 9.58800 11.08925 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.001698 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.835442 B =16486.692408 C =16887.707793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.125 3.875 3 C -0.172 4.172 4 N -0.522 5.522 5 C 0.223 3.777 6 C -0.272 4.272 7 C 0.210 3.790 8 N -0.749 5.749 9 C 0.702 3.298 10 O -0.592 6.592 11 N -0.741 5.741 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.472 3.528 24 O -0.437 6.437 25 N -0.616 5.616 26 C 0.657 3.343 27 O -0.527 6.527 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.186 0.814 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.393 0.607 39 H 0.393 0.607 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.261 0.739 47 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.983 13.385 -4.101 31.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.023 3.977 3 C -0.229 4.229 4 N -0.238 5.238 5 C 0.085 3.915 6 C -0.282 4.282 7 C 0.084 3.916 8 N -0.406 5.406 9 C 0.401 3.599 10 O -0.470 6.470 11 N -0.395 5.395 12 C 0.012 3.988 13 C -0.159 4.159 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C 0.270 3.730 24 O -0.230 6.230 25 N -0.373 5.373 26 C 0.359 3.641 27 O -0.401 6.401 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.203 0.797 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.226 0.774 39 H 0.226 0.774 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -28.674 12.848 -3.847 31.656 hybrid contribution 1.306 1.154 0.013 1.743 sum -27.368 14.002 -3.834 30.980 Atomic orbital electron populations 1.22236 0.92845 1.02973 1.04842 1.21666 0.96498 0.94725 0.84809 1.22237 1.01388 0.94455 1.04849 1.46848 1.42067 1.24001 1.10920 1.22438 0.84804 0.83569 1.00687 1.19394 1.13182 1.06064 0.89560 1.19502 0.77585 0.91006 1.03466 1.45193 1.05110 1.09535 1.80789 1.15975 0.80917 0.84897 0.78076 1.90931 1.82047 1.16681 1.57356 1.45389 1.04363 1.11430 1.78354 1.21512 0.85631 0.89842 1.01821 1.21889 0.92788 1.00402 1.00773 1.19030 0.91449 0.93253 0.97680 1.21201 0.91048 0.93614 1.50203 0.92677 1.25030 0.99305 0.94846 0.95299 1.69963 1.28707 1.04472 1.50077 0.86586 0.83913 0.79358 0.78072 1.20671 1.21212 1.19934 1.20265 0.81602 0.84225 0.86889 1.85079 1.69239 1.52753 1.15972 1.69729 1.24092 1.14324 1.29159 1.17354 0.82404 0.85540 0.78805 1.90949 1.39268 1.25196 1.84736 0.90478 0.92300 0.89566 0.88003 0.92235 0.90463 0.89559 0.79747 0.89757 0.90416 0.77351 0.77358 0.91910 0.91935 0.92809 0.92782 0.96217 0.96232 0.92931 0.72454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 9.12 37.16 0.34 -0.56 16 2 C 0.13 0.58 3.22 -67.93 -0.22 0.36 16 3 C -0.17 -0.94 9.11 37.16 0.34 -0.60 16 4 N -0.52 -3.40 2.55 -114.72 -0.29 -3.69 16 5 C 0.22 0.96 10.04 -16.59 -0.17 0.80 16 6 C -0.27 -1.66 5.25 -104.64 -0.55 -2.21 16 7 C 0.21 1.60 5.57 -5.19 -0.03 1.57 16 8 N -0.75 -6.86 5.55 -66.42 -0.37 -7.23 16 9 C 0.70 9.76 8.57 -86.92 -0.74 9.01 16 10 O -0.59 -10.81 16.34 5.29 0.09 -10.72 16 11 N -0.74 -10.06 5.56 -65.23 -0.36 -10.42 16 12 C 0.14 2.32 5.67 -4.04 -0.02 2.29 16 13 C -0.12 -2.29 5.27 -26.73 -0.14 -2.44 16 14 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 15 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 19 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.47 3.64 7.89 -16.35 -0.13 3.51 16 24 O -0.44 -2.82 12.80 -17.18 -0.22 -3.04 16 25 N -0.62 -6.30 10.40 -16.72 -0.17 -6.48 16 26 C 0.66 6.95 7.76 -88.43 -0.69 6.26 16 27 O -0.53 -7.09 13.29 4.94 0.07 -7.03 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.72 6.13 -51.93 -0.32 0.40 16 31 H 0.10 0.16 7.76 -51.93 -0.40 -0.25 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.73 6.12 -51.93 -0.32 0.42 16 35 H 0.19 0.10 7.87 -52.49 -0.41 -0.31 16 36 H 0.08 0.79 7.77 -51.93 -0.40 0.38 16 37 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 38 H 0.39 2.76 8.48 -40.82 -0.35 2.41 16 39 H 0.39 4.22 8.49 -40.82 -0.35 3.87 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.42 1.26 8.98 45.56 0.41 1.66 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -38.09 394.76 -8.49 -46.57 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.33 Total: 0.40 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -2.56 Total: 5.23 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.46 Total: -53.66 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.07 Total: -20.78 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.09 -8.49 -46.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668606253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.503 kcal (2) G-P(sol) polarization free energy of solvation -38.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds