Wall clock time and date at job start Tue Mar 31 2020 21:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47333 * 2 1 4 4 N 1.46503 * 109.47215 * 120.00277 * 2 1 3 5 5 C 1.36161 * 119.85637 * 119.99948 * 4 2 1 6 6 C 1.35545 * 119.25842 * 179.97438 * 5 4 2 7 7 C 1.50703 * 120.49611 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47085 * 95.00713 * 7 6 5 9 9 C 1.34780 * 120.00187 * 179.97438 * 8 7 6 10 10 O 1.21590 * 119.99402 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00074 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99794 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47205 * 179.97438 * 12 11 9 14 14 C 1.52993 * 109.47569 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47776 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99704 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00453 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00317 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99966 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46928 * 90.00226 * 19 17 15 21 21 H 1.48504 * 109.46824 * 210.00031 * 19 17 15 22 22 H 1.48494 * 109.47252 * 330.00021 * 19 17 15 23 23 C 1.40734 * 118.99798 * 0.02562 * 6 5 4 24 24 O 1.35160 * 120.16225 * 180.02562 * 23 6 5 25 25 N 1.32429 * 119.67329 * 359.97438 * 23 6 5 26 26 C 1.33271 * 120.72637 * 359.97438 * 25 23 6 27 27 O 1.21977 * 119.47328 * 180.02562 * 26 25 23 28 28 H 1.09002 * 109.47108 * 60.00158 * 1 2 3 29 29 H 1.09006 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47440 * 299.99862 * 1 2 3 31 31 H 1.09003 * 109.47440 * 240.00138 * 2 1 3 32 32 H 1.08998 * 109.47568 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47153 * 300.00458 * 3 2 1 34 34 H 1.09003 * 109.47200 * 59.99992 * 3 2 1 35 35 H 1.07999 * 120.37040 * 0.27835 * 5 4 2 36 36 H 1.09007 * 109.46491 * 215.00043 * 7 6 5 37 37 H 1.08994 * 109.47204 * 335.00231 * 7 6 5 38 38 H 0.97000 * 119.99853 * 359.97438 * 8 7 6 39 39 H 0.96997 * 120.00226 * 359.97438 * 11 9 8 40 40 H 1.08999 * 109.47053 * 299.99773 * 12 11 9 41 41 H 1.08998 * 109.47652 * 59.99940 * 12 11 9 42 42 H 1.08999 * 109.47046 * 299.99920 * 13 12 11 43 43 H 1.09002 * 109.47233 * 59.99431 * 13 12 11 44 44 H 1.09008 * 109.47126 * 299.99880 * 14 13 12 45 45 H 1.09002 * 109.47181 * 59.99554 * 14 13 12 46 46 H 0.96997 * 120.00311 * 180.02562 * 18 17 15 47 47 H 0.96702 * 113.99962 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8009 -1.7975 1.0678 6 6 3.2465 -2.4267 2.1825 7 6 4.1148 -3.6536 2.0729 8 7 5.5243 -3.2634 2.1573 9 6 6.4889 -4.2018 2.0828 10 8 6.1892 -5.3722 1.9460 11 7 7.7857 -3.8428 2.1600 12 6 8.8341 -4.8628 2.0796 13 6 10.2058 -4.1943 2.1920 14 6 11.3007 -5.2596 2.1087 15 6 12.6517 -4.6013 2.2201 16 1 12.7223 -3.5301 2.3381 17 6 13.7976 -5.3664 2.1713 18 7 13.7117 -6.6709 2.0282 19 14 15.4723 -4.5501 2.3087 20 1 15.8750 -4.4839 3.7365 21 1 16.4726 -5.3417 1.5484 22 1 15.4005 -3.1760 1.7504 23 6 2.8861 -1.9170 3.4438 24 8 3.3177 -2.5256 4.5709 25 7 2.1228 -0.8376 3.5210 26 6 1.6922 -0.2277 2.4170 27 8 0.9906 0.7653 2.5147 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.0678 -2.1670 0.0886 36 1 3.8784 -4.3398 2.8862 37 1 3.9304 -4.1450 1.1176 38 1 5.7633 -2.3298 2.2669 39 1 8.0248 -2.9090 2.2688 40 1 8.7096 -5.5767 2.8937 41 1 8.7616 -5.3840 1.1250 42 1 10.3300 -3.4806 1.3776 43 1 10.2786 -3.6727 3.1464 44 1 11.1764 -5.9730 2.9234 45 1 11.2280 -5.7815 1.1545 46 1 14.5179 -7.2092 1.9943 47 1 3.0180 -2.1013 5.3865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668606253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:48:05 Heat of formation + Delta-G solvation = -107.437976 kcal Electronic energy + Delta-G solvation = -28430.776766 eV Core-core repulsion = 24226.926782 eV Total energy + Delta-G solvation = -4203.849984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.05289 -40.94157 -39.96873 -38.06967 -37.11727 -36.75984 -35.79762 -35.13281 -33.44968 -32.95918 -31.87485 -28.63046 -28.22729 -26.86846 -25.91656 -25.01054 -24.42827 -22.23811 -21.98553 -21.77101 -20.78800 -19.35367 -19.28073 -18.51829 -17.70418 -17.46991 -17.10138 -16.85523 -16.72295 -16.46720 -15.74883 -15.61697 -15.48069 -15.26266 -15.19629 -15.05683 -14.85179 -14.60359 -14.24516 -14.10725 -13.89186 -13.69392 -13.36436 -13.14948 -13.04428 -12.79182 -12.72253 -12.50825 -12.38236 -12.32792 -12.17840 -11.70386 -11.61925 -11.60723 -11.28099 -11.18151 -11.10584 -10.78331 -10.52518 -10.30355 -9.69648 -9.65737 -8.16838 -6.27917 -0.36160 0.41648 1.32499 1.43489 1.44503 1.55348 1.86700 2.19156 2.25894 2.43901 2.61341 3.16904 3.18615 3.40900 3.48891 3.55698 3.80478 3.94907 4.02814 4.17272 4.20087 4.24392 4.30172 4.62539 4.68119 4.69333 4.69940 4.81307 4.84276 4.90745 5.02375 5.06835 5.07345 5.22005 5.27261 5.29713 5.43601 5.50982 5.53253 5.61187 5.76075 5.88131 6.05864 6.16511 6.26209 6.67335 6.89653 7.04437 7.17956 7.41448 7.66934 8.95071 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.001698 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.835442 B =16486.692408 C =16887.707793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.121 3.879 3 C -0.169 4.169 4 N -0.517 5.517 5 C 0.248 3.752 6 C -0.278 4.278 7 C 0.214 3.786 8 N -0.728 5.728 9 C 0.701 3.299 10 O -0.637 6.637 11 N -0.732 5.732 12 C 0.151 3.849 13 C -0.101 4.101 14 C 0.022 3.978 15 C -0.540 4.540 16 H 0.066 0.934 17 C -0.004 4.004 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.260 1.260 23 C 0.473 3.527 24 O -0.441 6.441 25 N -0.652 5.652 26 C 0.648 3.352 27 O -0.571 6.571 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.151 0.849 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.236 0.764 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.407 0.593 39 H 0.410 0.590 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.065 0.935 44 H -0.008 1.008 45 H -0.006 1.006 46 H 0.263 0.737 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.660 14.699 -5.847 31.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.020 3.980 3 C -0.227 4.227 4 N -0.231 5.231 5 C 0.111 3.889 6 C -0.287 4.287 7 C 0.090 3.910 8 N -0.385 5.385 9 C 0.400 3.600 10 O -0.519 6.519 11 N -0.388 5.388 12 C 0.026 3.974 13 C -0.139 4.139 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.084 0.916 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.790 3.210 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.184 1.184 23 C 0.273 3.727 24 O -0.237 6.237 25 N -0.411 5.411 26 C 0.350 3.650 27 O -0.449 6.449 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.168 0.832 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.252 0.748 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.243 0.757 39 H 0.246 0.754 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.010 0.990 45 H 0.012 0.988 46 H 0.071 0.929 47 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -28.367 14.216 -5.581 32.217 hybrid contribution 1.139 0.730 0.566 1.466 sum -27.228 14.946 -5.015 31.463 Atomic orbital electron populations 1.22196 0.93554 1.02971 1.03923 1.21989 0.96044 0.94650 0.85350 1.22196 1.01511 0.95046 1.03919 1.46819 1.41625 1.24342 1.10340 1.23130 0.82099 0.81547 1.02163 1.19229 1.13898 1.06109 0.89509 1.19499 0.76500 0.91334 1.03690 1.45041 1.04946 1.09415 1.79054 1.16091 0.81283 0.84827 0.77766 1.90908 1.82712 1.18899 1.59394 1.45034 1.03787 1.11538 1.78392 1.21042 0.85810 0.90109 1.00459 1.21583 0.91679 0.98679 1.01944 1.18953 0.93190 0.94221 0.95171 1.21687 0.92198 0.94303 1.49593 0.91588 1.26009 1.03787 0.95410 0.94927 1.70108 1.29883 1.06153 1.51287 0.85437 0.78538 0.78733 0.78251 1.19986 1.21086 1.18444 1.20456 0.80909 0.83550 0.87778 1.85069 1.69158 1.52879 1.16561 1.69613 1.25734 1.15773 1.29991 1.17483 0.82237 0.85257 0.80012 1.90925 1.41255 1.27091 1.85610 0.88503 0.91787 0.93358 0.83161 0.91860 0.88532 0.93339 0.74754 0.91512 0.88768 0.75691 0.75354 0.93698 0.93231 0.91306 0.91628 0.98986 0.98756 0.92870 0.71051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 9.12 71.98 0.66 -0.86 16 2 C 0.12 0.77 3.22 44.99 0.14 0.92 16 3 C -0.17 -1.58 9.11 71.98 0.66 -0.92 16 4 N -0.52 -5.57 2.55 -635.06 -1.62 -7.19 16 5 C 0.25 1.17 10.04 83.40 0.84 2.01 16 6 C -0.28 -2.67 5.25 -19.88 -0.10 -2.77 16 7 C 0.21 2.72 5.57 85.63 0.48 3.19 16 8 N -0.73 -11.36 5.55 -482.30 -2.68 -14.03 16 9 C 0.70 18.22 8.57 179.06 1.53 19.75 16 10 O -0.64 -22.77 16.34 -4.00 -0.07 -22.84 16 11 N -0.73 -18.46 5.56 -478.54 -2.66 -21.12 16 12 C 0.15 5.09 5.67 86.38 0.49 5.58 16 13 C -0.10 -3.74 5.27 30.59 0.16 -3.58 16 14 C 0.02 1.14 4.97 29.84 0.15 1.29 16 15 C -0.54 -29.67 9.11 25.60 0.23 -29.43 16 16 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 17 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 18 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 19 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 23 C 0.47 6.83 7.89 85.21 0.67 7.50 16 24 O -0.44 -5.42 12.80 -84.38 -1.08 -6.50 16 25 N -0.65 -13.43 10.40 -438.81 -4.56 -18.00 16 26 C 0.65 13.72 7.76 179.58 1.39 15.12 16 27 O -0.57 -16.29 13.29 -5.24 -0.07 -16.36 16 28 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.05 0.84 6.13 -2.39 -0.01 0.83 16 31 H 0.15 -0.41 7.76 -2.39 -0.02 -0.43 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.05 0.86 6.12 -2.39 -0.01 0.84 16 35 H 0.24 -1.29 7.87 -2.91 -0.02 -1.32 16 36 H 0.07 1.15 7.77 -2.38 -0.02 1.13 16 37 H 0.09 0.96 8.06 -2.39 -0.02 0.94 16 38 H 0.41 4.34 8.48 -92.71 -0.79 3.56 16 39 H 0.41 7.58 8.49 -92.71 -0.79 6.80 16 40 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 44 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 45 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 46 H 0.26 14.95 8.31 -92.71 -0.77 14.17 16 47 H 0.43 2.57 8.98 -74.06 -0.66 1.91 16 Total: -1.00 -87.50 394.76 -3.87 -91.37 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -1.21 Total: 7.47 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 7.76 Total: 18.05 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -11.23 Total: -116.53 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -1.21 Total: -45.70 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -87.50 -3.87 -91.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668606253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.064 kcal (2) G-P(sol) polarization free energy of solvation -87.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds