Wall clock time and date at job start Tue Mar 31 2020 21:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47022 * 2 1 4 4 N 1.46907 * 109.46979 * 179.97438 * 3 2 1 5 5 C 1.46893 * 110.99965 * 59.16403 * 4 3 2 6 6 C 1.53004 * 109.47139 * 66.04513 * 5 4 3 7 7 N 1.46505 * 109.47230 * 179.97438 * 6 5 4 8 8 C 1.34767 * 120.00250 * 180.02562 * 7 6 5 9 9 O 1.21617 * 119.99855 * 359.97438 * 8 7 6 10 10 C 1.47422 * 120.00385 * 180.02562 * 8 7 6 11 11 C 1.36086 * 126.44779 * 179.71936 * 10 8 7 12 12 O 1.34258 * 106.94689 * 180.25972 * 11 10 8 13 13 C 1.34054 * 108.22899 * 359.97438 * 12 11 10 14 14 C 1.50694 * 125.38150 * 180.02562 * 13 12 11 15 15 N 1.29932 * 109.24037 * 0.02562 * 13 12 11 16 16 C 1.46894 * 111.00130 * 295.20891 * 4 3 2 17 17 C 1.50704 * 109.47499 * 288.24190 * 16 4 3 18 18 O 1.21298 * 119.99700 * 354.29930 * 17 16 4 19 19 N 1.34772 * 120.00319 * 174.29765 * 17 16 4 20 20 C 1.37099 * 119.99868 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00025 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99766 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99891 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00157 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47033 * 59.99407 * 24 22 20 26 26 H 1.48496 * 109.47484 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46816 * 300.00001 * 24 22 20 28 28 H 1.08996 * 109.47070 * 59.99882 * 1 2 3 29 29 H 1.09006 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47358 * 299.99935 * 1 2 3 31 31 H 1.09004 * 109.46680 * 240.00037 * 2 1 3 32 32 H 1.09003 * 109.46684 * 120.00689 * 2 1 3 33 33 H 1.09000 * 109.46931 * 59.93715 * 3 2 1 34 34 H 1.09001 * 109.47804 * 299.93364 * 3 2 1 35 35 H 1.09004 * 109.47312 * 306.05020 * 5 4 3 36 36 H 1.09002 * 109.47209 * 186.04474 * 5 4 3 37 37 H 1.09001 * 109.47079 * 60.00284 * 6 5 4 38 38 H 1.09002 * 109.47038 * 300.00065 * 6 5 4 39 39 H 0.96999 * 119.99455 * 0.02562 * 7 6 5 40 40 H 1.07998 * 126.53180 * 0.24430 * 11 10 8 41 41 H 1.09004 * 109.47457 * 269.96059 * 14 13 12 42 42 H 1.09007 * 109.47456 * 29.95342 * 14 13 12 43 43 H 1.09003 * 109.47571 * 149.95654 * 14 13 12 44 44 H 1.09006 * 109.47212 * 48.23591 * 16 4 3 45 45 H 1.08999 * 109.47409 * 168.24223 * 16 4 3 46 46 H 0.96997 * 120.00141 * 359.97438 * 19 17 16 47 47 H 0.97002 * 119.99750 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0359 0.7393 -1.1766 6 6 3.6724 1.5194 -2.4416 7 7 4.1985 0.8185 -3.6157 8 6 3.9986 1.3249 -4.8485 9 8 3.3812 2.3635 -4.9864 10 6 4.5275 0.6193 -6.0299 11 6 4.3987 1.0071 -7.3280 12 8 5.0192 0.0812 -8.0764 13 6 5.5187 -0.8546 -7.2568 14 6 6.2913 -2.0731 -7.6918 15 7 5.2314 -0.5451 -6.0280 16 6 4.0350 0.8585 1.2417 17 6 3.7993 1.8119 2.3848 18 8 3.3423 2.9148 2.1702 19 7 4.0964 1.4391 3.6454 20 6 3.8815 2.3063 4.6853 21 1 3.4746 3.2883 4.4943 22 6 4.1883 1.9222 5.9849 23 7 4.6839 0.7274 6.2173 24 14 3.8962 3.1039 7.4018 25 1 2.4551 3.4572 7.4627 26 1 4.3015 2.4586 8.6763 27 1 4.6992 4.3354 7.1927 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 1.6757 1.9565 0.8894 34 1 1.6776 1.9560 -0.8905 35 1 3.6015 -0.2591 -1.2281 36 1 5.1202 0.6602 -1.0974 37 1 4.1068 2.5178 -2.3902 38 1 2.5882 1.5985 -2.5207 39 1 4.6906 -0.0101 -3.5056 40 1 3.8934 1.8912 -7.6877 41 1 5.6005 -2.8979 -7.8674 42 1 6.8328 -1.8509 -8.6114 43 1 6.9994 -2.3521 -6.9115 44 1 3.5260 -0.0840 1.4440 45 1 5.1045 0.6781 1.1337 46 1 4.4615 0.5570 3.8171 47 1 4.8977 0.4591 7.1246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691179412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:17 Heat of formation + Delta-G solvation = -46.468003 kcal Electronic energy + Delta-G solvation = -28579.391180 eV Core-core repulsion = 24378.185052 eV Total energy + Delta-G solvation = -4201.206127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.84920 -39.79450 -38.89502 -37.17997 -35.35966 -34.87486 -33.82956 -32.74258 -32.57056 -31.19165 -29.65279 -28.27759 -27.19245 -25.52021 -24.56205 -23.39664 -22.63860 -21.89401 -20.80349 -20.21005 -18.93737 -18.40973 -17.78482 -17.35622 -16.81790 -16.37734 -16.04971 -15.83281 -15.43658 -15.05374 -14.81927 -14.50312 -14.34309 -14.24704 -13.78076 -13.69533 -13.63921 -13.58662 -13.27786 -13.06839 -13.02215 -12.63547 -11.95611 -11.72221 -11.60397 -11.52320 -11.46518 -11.41015 -11.28823 -11.25938 -11.07476 -10.90931 -10.47609 -10.41910 -10.25981 -10.17686 -9.47844 -9.43551 -9.16088 -8.43262 -7.93040 -7.82072 -6.38409 -3.78934 0.71800 1.59160 2.13569 2.79207 3.03318 3.22455 3.27720 3.32350 3.43118 3.95529 4.04313 4.26985 4.36031 4.45601 4.77940 4.82515 4.83137 4.97727 5.00480 5.04976 5.12580 5.18733 5.23670 5.27921 5.28559 5.40106 5.45944 5.64252 5.65876 5.71833 5.81383 5.87908 5.94029 5.99961 6.06127 6.19065 6.21836 6.30212 6.36296 6.56957 6.97388 7.22714 7.31774 7.35381 7.58244 7.92852 8.09951 8.66065 9.22040 9.58651 10.11151 10.79384 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.001863 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.579094 B =15026.082684 C =15364.985463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.167 4.167 3 C 0.052 3.948 4 N -0.507 5.507 5 C 0.040 3.960 6 C 0.122 3.878 7 N -0.709 5.709 8 C 0.601 3.399 9 O -0.534 6.534 10 C -0.070 4.070 11 C 0.013 3.987 12 O -0.198 6.198 13 C 0.197 3.803 14 C -0.059 4.059 15 N -0.463 5.463 16 C 0.043 3.957 17 C 0.445 3.555 18 O -0.574 6.574 19 N -0.567 5.567 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.408 0.592 40 H 0.232 0.768 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 -9.669 -26.687 28.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.206 4.206 3 C -0.076 4.076 4 N -0.229 5.229 5 C -0.089 4.089 6 C -0.002 4.002 7 N -0.360 5.360 8 C 0.386 3.614 9 O -0.411 6.411 10 C -0.190 4.190 11 C -0.061 4.061 12 O -0.084 6.084 13 C -0.012 4.012 14 C -0.117 4.117 15 N -0.194 5.194 16 C -0.089 4.089 17 C 0.230 3.770 18 O -0.458 6.458 19 N -0.204 5.204 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.243 0.757 40 H 0.248 0.752 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.122 0.878 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.224 0.776 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.981 -8.115 -26.214 27.458 hybrid contribution -0.095 -0.874 0.478 1.001 sum 0.886 -8.989 -25.736 27.275 Atomic orbital electron populations 1.21643 0.95437 1.01244 1.01988 1.22228 0.96900 0.99712 1.01733 1.22375 0.86392 0.94745 1.04096 1.61661 1.07993 1.53140 1.00127 1.22283 1.00765 0.95635 0.90224 1.21407 0.99660 0.96679 0.82426 1.45713 1.56848 1.27888 1.05553 1.16677 0.79359 0.83663 0.81700 1.90857 1.41405 1.22921 1.85925 1.21810 1.06252 0.95928 0.95017 1.25306 0.97153 0.94199 0.89468 1.84400 1.54629 1.29520 1.39814 1.26361 0.98320 0.93431 0.83114 1.20337 0.98759 0.88901 1.03658 1.70763 1.14556 1.12664 1.21396 1.21929 1.00631 0.96247 0.90059 1.19726 0.84902 0.88843 0.83490 1.90524 1.48937 1.22388 1.83914 1.41855 1.56834 1.16824 1.04860 1.19639 1.39808 0.98346 0.84881 0.88003 1.25246 0.97142 0.96876 0.98739 1.69607 1.43976 1.18760 1.22164 0.85929 0.78920 0.79848 0.79586 1.19966 1.21038 1.19921 0.92898 0.93143 0.92340 0.92250 0.91649 0.88739 0.90916 0.93818 0.90229 0.89930 0.90882 0.75693 0.75211 0.88611 0.89061 0.87754 0.92832 0.89441 0.77583 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.17 -2.19 5.29 -26.73 -0.14 -2.33 16 3 C 0.05 0.81 4.80 -3.83 -0.02 0.79 16 4 N -0.51 -8.18 4.31 -236.07 -1.02 -9.20 16 5 C 0.04 0.49 4.81 -3.83 -0.02 0.47 16 6 C 0.12 1.52 5.60 -4.04 -0.02 1.50 16 7 N -0.71 -7.98 5.55 -61.38 -0.34 -8.32 16 8 C 0.60 7.60 7.81 -12.52 -0.10 7.50 16 9 O -0.53 -8.26 16.89 5.26 0.09 -8.17 16 10 C -0.07 -0.75 6.99 -83.02 -0.58 -1.33 16 11 C 0.01 0.11 11.95 29.96 0.36 0.46 16 12 O -0.20 -1.55 10.73 6.50 0.07 -1.48 16 13 C 0.20 1.47 8.30 -13.08 -0.11 1.36 16 14 C -0.06 -0.17 10.51 36.00 0.38 0.21 16 15 N -0.46 -4.55 11.06 -7.66 -0.08 -4.63 16 16 C 0.04 0.74 5.34 -4.98 -0.03 0.72 16 17 C 0.45 10.45 7.36 -10.99 -0.08 10.37 16 18 O -0.57 -15.54 14.70 5.54 0.08 -15.46 16 19 N -0.57 -14.31 5.29 -10.96 -0.06 -14.36 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 24 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.70 6.26 -51.93 -0.33 0.38 16 32 H 0.06 0.92 6.30 -51.93 -0.33 0.60 16 33 H 0.09 1.81 6.54 -51.93 -0.34 1.47 16 34 H 0.07 1.07 6.51 -51.93 -0.34 0.73 16 35 H 0.04 0.48 5.98 -51.93 -0.31 0.17 16 36 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 0.96 6.57 -51.93 -0.34 0.62 16 39 H 0.41 3.92 8.20 -40.82 -0.33 3.59 16 40 H 0.23 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.05 0.85 5.97 -51.93 -0.31 0.54 16 45 H 0.09 1.38 7.81 -51.93 -0.41 0.97 16 46 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 392.71 15.07 5.92 5.92 Total: -1.00 -34.64 392.71 -6.53 -41.16 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -6.66 Total: 11.88 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -0.23 Total: 10.38 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.78 Total: -60.41 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: 0.24 Total: -25.11 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.64 -6.53 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691179412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.303 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds