Wall clock time and date at job start Tue Mar 31 2020 21:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47022 * 2 1 4 4 N 1.46907 * 109.46979 * 179.97438 * 3 2 1 5 5 C 1.46893 * 110.99965 * 59.16403 * 4 3 2 6 6 C 1.53004 * 109.47139 * 66.04513 * 5 4 3 7 7 N 1.46505 * 109.47230 * 179.97438 * 6 5 4 8 8 C 1.34767 * 120.00250 * 180.02562 * 7 6 5 9 9 O 1.21617 * 119.99855 * 359.97438 * 8 7 6 10 10 C 1.47422 * 120.00385 * 180.02562 * 8 7 6 11 11 C 1.36086 * 126.44779 * 179.71936 * 10 8 7 12 12 O 1.34258 * 106.94689 * 180.25972 * 11 10 8 13 13 C 1.34054 * 108.22899 * 359.97438 * 12 11 10 14 14 C 1.50694 * 125.38150 * 180.02562 * 13 12 11 15 15 N 1.29932 * 109.24037 * 0.02562 * 13 12 11 16 16 C 1.46894 * 111.00130 * 295.20891 * 4 3 2 17 17 C 1.50704 * 109.47499 * 288.24190 * 16 4 3 18 18 O 1.21298 * 119.99700 * 354.29930 * 17 16 4 19 19 N 1.34772 * 120.00319 * 174.29765 * 17 16 4 20 20 C 1.37099 * 119.99868 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00025 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99766 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99891 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00157 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47033 * 59.99407 * 24 22 20 26 26 H 1.48496 * 109.47484 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46816 * 300.00001 * 24 22 20 28 28 H 1.08996 * 109.47070 * 59.99882 * 1 2 3 29 29 H 1.09006 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47358 * 299.99935 * 1 2 3 31 31 H 1.09004 * 109.46680 * 240.00037 * 2 1 3 32 32 H 1.09003 * 109.46684 * 120.00689 * 2 1 3 33 33 H 1.09000 * 109.46931 * 59.93715 * 3 2 1 34 34 H 1.09001 * 109.47804 * 299.93364 * 3 2 1 35 35 H 1.09004 * 109.47312 * 306.05020 * 5 4 3 36 36 H 1.09002 * 109.47209 * 186.04474 * 5 4 3 37 37 H 1.09001 * 109.47079 * 60.00284 * 6 5 4 38 38 H 1.09002 * 109.47038 * 300.00065 * 6 5 4 39 39 H 0.96999 * 119.99455 * 0.02562 * 7 6 5 40 40 H 1.07998 * 126.53180 * 0.24430 * 11 10 8 41 41 H 1.09004 * 109.47457 * 269.96059 * 14 13 12 42 42 H 1.09007 * 109.47456 * 29.95342 * 14 13 12 43 43 H 1.09003 * 109.47571 * 149.95654 * 14 13 12 44 44 H 1.09006 * 109.47212 * 48.23591 * 16 4 3 45 45 H 1.08999 * 109.47409 * 168.24223 * 16 4 3 46 46 H 0.96997 * 120.00141 * 359.97438 * 19 17 16 47 47 H 0.97002 * 119.99750 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0359 0.7393 -1.1766 6 6 3.6724 1.5194 -2.4416 7 7 4.1985 0.8185 -3.6157 8 6 3.9986 1.3249 -4.8485 9 8 3.3812 2.3635 -4.9864 10 6 4.5275 0.6193 -6.0299 11 6 4.3987 1.0071 -7.3280 12 8 5.0192 0.0812 -8.0764 13 6 5.5187 -0.8546 -7.2568 14 6 6.2913 -2.0731 -7.6918 15 7 5.2314 -0.5451 -6.0280 16 6 4.0350 0.8585 1.2417 17 6 3.7993 1.8119 2.3848 18 8 3.3423 2.9148 2.1702 19 7 4.0964 1.4391 3.6454 20 6 3.8815 2.3063 4.6853 21 1 3.4746 3.2883 4.4943 22 6 4.1883 1.9222 5.9849 23 7 4.6839 0.7274 6.2173 24 14 3.8962 3.1039 7.4018 25 1 2.4551 3.4572 7.4627 26 1 4.3015 2.4586 8.6763 27 1 4.6992 4.3354 7.1927 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 1.6757 1.9565 0.8894 34 1 1.6776 1.9560 -0.8905 35 1 3.6015 -0.2591 -1.2281 36 1 5.1202 0.6602 -1.0974 37 1 4.1068 2.5178 -2.3902 38 1 2.5882 1.5985 -2.5207 39 1 4.6906 -0.0101 -3.5056 40 1 3.8934 1.8912 -7.6877 41 1 5.6005 -2.8979 -7.8674 42 1 6.8328 -1.8509 -8.6114 43 1 6.9994 -2.3521 -6.9115 44 1 3.5260 -0.0840 1.4440 45 1 5.1045 0.6781 1.1337 46 1 4.4615 0.5570 3.8171 47 1 4.8977 0.4591 7.1246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691179412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:16 Heat of formation + Delta-G solvation = -75.904728 kcal Electronic energy + Delta-G solvation = -28580.667652 eV Core-core repulsion = 24378.185052 eV Total energy + Delta-G solvation = -4202.482600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.47053 -40.87151 -40.38136 -38.74149 -36.15301 -35.93162 -35.71364 -33.76781 -33.23354 -33.14396 -30.82401 -28.87491 -28.47901 -26.92352 -25.95357 -24.52642 -23.64916 -22.52593 -21.74382 -21.47505 -20.60449 -19.77673 -19.21151 -17.97658 -17.75685 -17.47661 -17.37829 -17.12077 -16.67071 -16.47584 -16.13454 -15.75151 -15.52455 -15.16719 -14.98335 -14.90498 -14.84196 -14.42455 -14.28589 -14.15104 -13.87600 -13.48502 -13.27176 -13.20006 -13.04905 -12.74089 -12.66428 -12.53569 -12.42181 -12.38221 -12.33986 -12.16302 -12.09140 -11.93722 -11.53375 -11.47541 -11.32289 -10.31314 -10.29100 -9.97618 -9.96929 -9.13300 -8.44297 -5.92401 0.03168 0.92467 1.40232 1.41652 1.52265 1.56318 1.89500 2.10120 2.15975 2.30681 2.76920 2.96243 3.22532 3.44414 3.67891 3.77956 3.81634 3.94093 3.99350 4.15195 4.26924 4.34272 4.41640 4.43061 4.44225 4.51575 4.57728 4.66239 4.69556 4.74549 4.78507 4.80304 4.88920 4.95291 4.99132 5.17632 5.18261 5.24934 5.26885 5.38883 5.42877 5.87547 6.07863 6.16275 6.23695 6.54588 6.64201 7.00733 7.16236 7.60481 8.17310 8.72859 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.001863 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.579094 B =15026.082684 C =15364.985463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.158 4.158 3 C 0.056 3.944 4 N -0.530 5.530 5 C 0.048 3.952 6 C 0.131 3.869 7 N -0.698 5.698 8 C 0.599 3.401 9 O -0.571 6.571 10 C -0.100 4.100 11 C 0.025 3.975 12 O -0.197 6.197 13 C 0.203 3.797 14 C -0.059 4.059 15 N -0.487 5.487 16 C 0.056 3.944 17 C 0.442 3.558 18 O -0.616 6.616 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.273 1.273 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.418 0.582 40 H 0.253 0.747 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.076 0.924 45 H 0.112 0.888 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 -11.741 -28.168 30.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C -0.071 4.071 4 N -0.253 5.253 5 C -0.079 4.079 6 C 0.007 3.993 7 N -0.350 5.350 8 C 0.386 3.614 9 O -0.451 6.451 10 C -0.219 4.219 11 C -0.049 4.049 12 O -0.083 6.083 13 C -0.007 4.007 14 C -0.116 4.116 15 N -0.218 5.218 16 C -0.075 4.075 17 C 0.230 3.770 18 O -0.501 6.501 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.199 1.199 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.255 0.745 40 H 0.268 0.732 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.093 0.907 45 H 0.130 0.870 46 H 0.229 0.771 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.758 -10.241 -27.695 29.580 hybrid contribution -0.309 -0.246 0.819 0.909 sum 1.449 -10.487 -26.876 28.886 Atomic orbital electron populations 1.21641 0.94666 1.02247 1.01673 1.22137 0.97575 0.97694 1.02232 1.22228 0.86448 0.96223 1.02242 1.61531 1.08316 1.54643 1.00787 1.22264 1.01572 0.95989 0.88125 1.21183 0.99062 0.95915 0.83139 1.45577 1.56512 1.27971 1.04899 1.16969 0.78734 0.83265 0.82446 1.90829 1.43190 1.24553 1.86516 1.21632 1.08209 0.97084 0.94952 1.25724 0.95956 0.94384 0.88861 1.84443 1.54551 1.29550 1.39751 1.27314 0.97089 0.93760 0.82513 1.20634 0.98899 0.87356 1.04731 1.70732 1.15582 1.12704 1.22770 1.21775 1.02426 0.94986 0.88271 1.20814 0.82787 0.89163 0.84264 1.90496 1.50275 1.24666 1.84679 1.41913 1.57499 1.16724 1.05221 1.19588 1.41651 0.98274 0.86522 0.90523 1.25996 0.96378 0.98481 1.00453 1.69665 1.43834 1.19659 1.22999 0.85024 0.78690 0.77881 0.76952 1.19848 1.19447 1.19859 0.92021 0.91426 0.93936 0.90091 0.92499 0.93029 0.90329 0.91537 0.88815 0.92128 0.91592 0.74525 0.73154 0.86889 0.87020 0.87019 0.90667 0.87025 0.77058 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.91 71.98 0.71 -2.59 16 2 C -0.16 -3.92 5.29 30.59 0.16 -3.75 16 3 C 0.06 1.78 4.80 86.30 0.41 2.19 16 4 N -0.53 -16.79 4.31 -900.80 -3.88 -20.67 16 5 C 0.05 1.10 4.81 86.31 0.41 1.51 16 6 C 0.13 3.20 5.60 86.38 0.48 3.68 16 7 N -0.70 -15.13 5.55 -466.35 -2.59 -17.72 16 8 C 0.60 15.03 7.81 86.66 0.68 15.71 16 9 O -0.57 -17.93 16.89 -4.08 -0.07 -18.00 16 10 C -0.10 -2.06 6.99 40.41 0.28 -1.78 16 11 C 0.03 0.39 11.95 67.32 0.80 1.19 16 12 O -0.20 -2.71 10.73 0.34 0.00 -2.71 16 13 C 0.20 2.60 8.30 88.39 0.73 3.34 16 14 C -0.06 -0.16 10.51 71.23 0.75 0.58 16 15 N -0.49 -8.87 11.06 -293.04 -3.24 -12.11 16 16 C 0.06 1.92 5.34 85.56 0.46 2.37 16 17 C 0.44 21.20 7.36 87.66 0.65 21.85 16 18 O -0.62 -34.68 14.70 -3.09 -0.05 -34.72 16 19 N -0.58 -29.69 5.29 -306.98 -1.62 -31.32 16 20 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 24 Si 0.99 43.54 29.55 68.60 2.03 45.57 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.68 6.26 -2.39 -0.01 1.66 16 32 H 0.06 1.52 6.30 -2.39 -0.02 1.50 16 33 H 0.05 2.07 6.54 -2.39 -0.02 2.05 16 34 H 0.08 2.33 6.51 -2.39 -0.02 2.32 16 35 H 0.07 1.25 5.98 -2.39 -0.01 1.23 16 36 H 0.09 1.90 7.86 -2.39 -0.02 1.88 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.72 6.57 -2.39 -0.02 1.70 16 39 H 0.42 7.38 8.20 -92.71 -0.76 6.62 16 40 H 0.25 2.50 8.06 -2.91 -0.02 2.47 16 41 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.11 -0.11 8.14 -2.38 -0.02 -0.13 16 43 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.08 2.26 5.97 -2.38 -0.01 2.25 16 45 H 0.11 3.28 7.81 -2.39 -0.02 3.26 16 46 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 47 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -77.54 392.71 -1.78 -79.32 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -0.47 Total: 36.08 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 7.82 Total: 25.88 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -11.05 Total: -131.43 kcal Atomic # 8 Polarization: -55.32 SS G_CDS: -0.11 Total: -55.43 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -77.54 -1.78 -79.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691179412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.415 kcal (2) G-P(sol) polarization free energy of solvation -77.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds