Wall clock time and date at job start Tue Mar 31 2020 21:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47202 * 2 1 4 4 C 1.52994 * 109.47190 * 175.30209 * 3 2 1 5 5 H 1.08996 * 109.47553 * 305.02068 * 4 3 2 6 6 O 1.42907 * 109.47062 * 65.02791 * 4 3 2 7 7 C 1.42898 * 113.99492 * 258.64264 * 6 4 3 8 8 C 1.50704 * 109.47086 * 185.01905 * 4 3 2 9 9 O 1.21281 * 120.00383 * 245.00546 * 8 4 3 10 10 N 1.34780 * 119.99352 * 64.99984 * 8 4 3 11 11 C 1.46502 * 119.99448 * 179.97438 * 10 8 4 12 12 C 1.50699 * 109.46879 * 180.02562 * 11 10 8 13 13 N 1.31802 * 119.09436 * 269.98084 * 12 11 10 14 14 C 1.32791 * 120.71250 * 180.02562 * 13 12 11 15 15 O 1.35521 * 120.50501 * 180.02562 * 14 13 12 16 16 C 1.39421 * 118.98044 * 359.75343 * 14 13 12 17 17 C 1.38181 * 118.34672 * 0.50590 * 16 14 13 18 18 C 1.50699 * 120.41023 * 179.76566 * 17 16 14 19 19 N 1.46501 * 109.47331 * 94.72478 * 18 17 16 20 20 C 1.36937 * 119.99947 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00153 * 359.72252 * 20 19 18 22 22 C 1.38820 * 119.99535 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99656 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00008 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47034 * 89.99938 * 24 22 20 26 26 H 1.48503 * 109.46872 * 209.99592 * 24 22 20 27 27 H 1.48500 * 109.47086 * 329.99757 * 24 22 20 28 28 N 1.31759 * 119.09362 * 90.00546 * 12 11 10 29 29 H 1.09005 * 109.46857 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47461 * 300.00053 * 1 2 3 31 31 H 1.09003 * 109.47511 * 60.00589 * 1 2 3 32 32 H 1.08998 * 109.47681 * 239.99198 * 2 1 3 33 33 H 1.09009 * 109.46841 * 119.99552 * 2 1 3 34 34 H 1.09003 * 109.46928 * 55.30169 * 3 2 1 35 35 H 1.08998 * 109.46822 * 295.30791 * 3 2 1 36 36 H 1.09003 * 109.47412 * 305.52491 * 7 6 4 37 37 H 1.09000 * 109.47379 * 65.52277 * 7 6 4 38 38 H 1.09000 * 109.47307 * 185.52133 * 7 6 4 39 39 H 0.96993 * 120.00687 * 0.02562 * 10 8 4 40 40 H 1.09004 * 109.47280 * 60.01186 * 11 10 8 41 41 H 1.08991 * 109.47758 * 300.00522 * 11 10 8 42 42 H 0.96697 * 114.00233 * 90.00690 * 15 14 13 43 43 H 1.08004 * 120.82419 * 180.27891 * 16 14 13 44 44 H 1.08998 * 109.47071 * 334.71982 * 18 17 16 45 45 H 1.09007 * 109.47180 * 214.72440 * 18 17 16 46 46 H 0.96998 * 119.99506 * 359.97438 * 19 18 17 47 47 H 0.97001 * 119.99875 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4441 0.1181 5 1 3.8621 0.8780 1.0010 6 8 4.1340 0.8427 -1.0468 7 6 4.5580 -0.5084 -0.8552 8 6 4.0581 2.8629 0.2422 9 8 4.7477 3.3440 -0.6318 10 7 3.7323 3.5971 1.3244 11 6 4.2117 4.9762 1.4453 12 6 3.7116 5.5705 2.7367 13 7 2.5534 6.1996 2.7466 14 6 2.0824 6.7357 3.8664 15 8 0.8908 7.3812 3.8719 16 6 2.8298 6.6194 5.0376 17 6 4.0408 5.9563 4.9799 18 6 4.8890 5.8081 6.2167 19 7 4.6068 4.5179 6.8506 20 6 5.2633 4.1607 7.9980 21 1 5.9923 4.8281 8.4332 22 6 4.9955 2.9383 8.5990 23 7 5.6268 2.5947 9.7016 24 14 3.7402 1.7805 7.8420 25 1 4.4182 0.8770 6.8780 26 1 3.1026 0.9730 8.9128 27 1 2.7018 2.5710 7.1333 28 7 4.4444 5.4473 3.8248 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6095 1.9801 0.8449 35 1 1.7469 1.9315 -0.9290 36 1 5.2419 -0.5580 -0.0078 37 1 3.6897 -1.1373 -0.6584 38 1 5.0657 -0.8608 -1.7530 39 1 3.1810 3.2124 2.0236 40 1 3.8404 5.5649 0.6064 41 1 5.3016 4.9838 1.4403 42 1 0.1348 6.8098 4.0643 43 1 2.4729 7.0402 5.9660 44 1 4.6586 6.6136 6.9139 45 1 5.9429 5.8554 5.9423 46 1 3.9544 3.9170 6.4579 47 1 5.4394 1.7407 10.1217 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691422103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:02 Heat of formation + Delta-G solvation = -59.658001 kcal Electronic energy + Delta-G solvation = -29195.152887 eV Core-core repulsion = 24993.374799 eV Total energy + Delta-G solvation = -4201.778089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.43859 -40.22983 -38.15363 -37.84107 -35.87163 -35.08176 -34.61746 -33.25686 -32.05163 -31.15269 -30.40988 -27.67024 -27.01340 -26.90415 -24.58143 -23.46029 -22.74301 -21.67608 -21.55091 -20.72434 -19.06933 -18.24150 -17.73835 -17.59881 -17.39943 -16.33092 -16.06080 -15.74683 -15.48528 -15.27121 -15.00692 -14.85358 -14.76216 -14.32463 -13.91968 -13.74446 -13.64941 -13.29969 -13.12207 -13.00819 -12.82871 -12.73958 -12.47873 -12.35776 -12.17384 -11.84974 -11.65833 -11.47872 -11.44364 -11.02062 -10.98999 -10.81694 -10.50725 -10.37303 -10.33280 -9.79497 -9.73913 -9.49723 -9.37450 -9.34514 -9.08578 -7.43980 -5.90605 -3.28879 0.57760 0.81111 2.39463 2.56022 3.09449 3.22321 3.26795 3.32696 3.45775 3.64137 3.76913 4.16606 4.27571 4.43118 4.45051 4.55117 4.69315 4.73003 4.79763 4.93526 5.01926 5.07106 5.12812 5.16580 5.19437 5.25902 5.35851 5.37273 5.42403 5.46151 5.48322 5.50227 5.57141 5.72446 5.80457 5.90638 6.00288 6.05824 6.19555 6.32731 6.69098 6.84109 7.12577 7.20368 7.80246 7.91523 7.97399 8.26392 9.01968 9.74135 9.91407 11.27098 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007887 B = 0.003409 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3549.143407 B = 8211.127950 C = 9860.616684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.133 4.133 4 C 0.074 3.926 5 H 0.091 0.909 6 O -0.356 6.356 7 C 0.023 3.977 8 C 0.516 3.484 9 O -0.517 6.517 10 N -0.719 5.719 11 C 0.197 3.803 12 C 0.315 3.685 13 N -0.530 5.530 14 C 0.355 3.645 15 O -0.475 6.475 16 C -0.218 4.218 17 C 0.194 3.806 18 C 0.201 3.799 19 N -0.745 5.745 20 C -0.249 4.249 21 H 0.095 0.905 22 C 0.011 3.989 23 N -0.928 5.928 24 Si 0.884 3.116 25 H -0.282 1.282 26 H -0.289 1.289 27 H -0.281 1.281 28 N -0.493 5.493 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.402 0.598 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.407 0.593 43 H 0.159 0.841 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.361 0.639 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.132 -1.266 -18.493 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.171 4.171 4 C 0.012 3.988 5 H 0.109 0.891 6 O -0.273 6.273 7 C -0.073 4.073 8 C 0.300 3.700 9 O -0.391 6.391 10 N -0.374 5.374 11 C 0.072 3.928 12 C 0.046 3.954 13 N -0.256 5.256 14 C 0.167 3.833 15 O -0.283 6.283 16 C -0.242 4.242 17 C 0.049 3.951 18 C 0.073 3.927 19 N -0.391 5.391 20 C -0.379 4.379 21 H 0.113 0.887 22 C -0.185 4.185 23 N -0.575 5.575 24 Si 0.714 3.286 25 H -0.209 1.209 26 H -0.215 1.215 27 H -0.208 1.208 28 N -0.209 5.209 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.236 0.764 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.266 0.734 43 H 0.176 0.824 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.194 0.806 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.825 -0.658 -20.037 22.326 hybrid contribution -1.921 -1.150 1.148 2.516 sum -11.746 -1.809 -18.889 22.317 Atomic orbital electron populations 1.21762 0.95313 1.01840 1.02038 1.21611 0.96439 0.95954 1.02380 1.22057 0.92568 0.98565 1.03899 1.22014 0.94181 0.91842 0.90754 0.89111 1.88023 1.80309 1.26841 1.32116 1.23037 0.98915 0.82731 1.02647 1.20522 0.80359 0.87637 0.81433 1.90732 1.36780 1.72078 1.39493 1.45762 1.54921 1.13501 1.23244 1.19872 1.00333 0.81709 0.90861 1.22752 0.86024 0.92328 0.94268 1.67699 1.15988 1.11213 1.30696 1.19394 0.88037 0.88174 0.87646 1.84720 1.14358 1.36028 1.93150 1.23025 0.97686 1.03240 1.00242 1.22249 0.91334 0.87514 0.94003 1.19698 0.96174 0.90570 0.86208 1.42495 1.50088 1.16697 1.29860 1.19011 1.17904 1.02123 0.98839 0.88705 1.24636 0.99337 0.97424 0.97129 1.69687 1.44652 1.23079 1.20068 0.86569 0.81775 0.81600 0.78629 1.20894 1.21472 1.20767 1.68208 1.34332 1.19563 0.98789 0.92555 0.92591 0.92553 0.91181 0.91849 0.90436 0.90133 0.93584 0.93420 0.89182 0.76386 0.88540 0.88193 0.73361 0.82377 0.92847 0.92463 0.80594 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.89 4.94 -26.73 -0.13 -1.02 16 3 C -0.13 -1.09 4.89 -26.73 -0.13 -1.22 16 4 C 0.07 0.75 2.68 -27.88 -0.07 0.67 16 5 H 0.09 0.78 7.60 -51.93 -0.39 0.38 16 6 O -0.36 -4.11 9.65 -55.09 -0.53 -4.64 16 7 C 0.02 0.19 10.47 101.05 1.06 1.24 16 8 C 0.52 6.59 7.18 -10.98 -0.08 6.51 16 9 O -0.52 -8.61 16.51 -14.30 -0.24 -8.85 16 10 N -0.72 -8.26 5.45 -61.47 -0.33 -8.59 16 11 C 0.20 2.45 6.10 -5.19 -0.03 2.42 16 12 C 0.32 4.37 7.01 -157.22 -1.10 3.27 16 13 N -0.53 -7.20 10.36 -10.78 -0.11 -7.31 16 14 C 0.35 4.51 7.83 -16.70 -0.13 4.38 16 15 O -0.48 -4.85 13.58 -18.26 -0.25 -5.10 16 16 C -0.22 -2.90 9.79 -39.16 -0.38 -3.28 16 17 C 0.19 3.05 6.18 -82.32 -0.51 2.54 16 18 C 0.20 3.62 6.61 -5.19 -0.03 3.59 16 19 N -0.74 -16.71 5.40 -61.08 -0.33 -17.04 16 20 C -0.25 -6.71 10.48 -15.06 -0.16 -6.87 16 21 H 0.10 2.71 8.06 -52.49 -0.42 2.29 16 22 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 23 N -0.93 -28.06 13.97 55.49 0.78 -27.28 16 24 Si 0.88 21.08 27.74 -169.99 -4.71 16.37 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.25 6.52 56.52 0.37 -5.89 16 28 N -0.49 -7.76 10.27 -7.06 -0.07 -7.83 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.50 6.53 -51.93 -0.34 0.16 16 33 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 34 H 0.08 0.57 7.77 -51.93 -0.40 0.16 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.35 8.00 -51.93 -0.42 -0.06 16 37 H 0.05 0.30 6.03 -51.93 -0.31 -0.01 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.40 4.06 8.17 -40.82 -0.33 3.73 16 40 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.41 2.09 9.06 45.56 0.41 2.50 16 43 H 0.16 1.82 8.06 -52.48 -0.42 1.39 16 44 H 0.05 0.90 8.06 -51.93 -0.42 0.48 16 45 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 46 H 0.36 8.05 5.52 -40.82 -0.23 7.82 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 397.67 15.07 5.99 5.99 Total: -1.00 -35.16 397.67 -7.50 -42.65 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.25 Total: 9.79 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: -1.43 Total: 11.84 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: -0.07 Total: -68.05 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -1.02 Total: -18.59 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.71 Total: 16.37 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.16 -7.50 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691422103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.007 kcal (2) G-P(sol) polarization free energy of solvation -35.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds