Wall clock time and date at job start Tue Mar 31 2020 21:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47202 * 2 1 4 4 C 1.52994 * 109.47190 * 175.30209 * 3 2 1 5 5 H 1.08996 * 109.47553 * 305.02068 * 4 3 2 6 6 O 1.42907 * 109.47062 * 65.02791 * 4 3 2 7 7 C 1.42898 * 113.99492 * 258.64264 * 6 4 3 8 8 C 1.50704 * 109.47086 * 185.01905 * 4 3 2 9 9 O 1.21281 * 120.00383 * 245.00546 * 8 4 3 10 10 N 1.34780 * 119.99352 * 64.99984 * 8 4 3 11 11 C 1.46502 * 119.99448 * 179.97438 * 10 8 4 12 12 C 1.50699 * 109.46879 * 180.02562 * 11 10 8 13 13 N 1.31802 * 119.09436 * 269.98084 * 12 11 10 14 14 C 1.32791 * 120.71250 * 180.02562 * 13 12 11 15 15 O 1.35521 * 120.50501 * 180.02562 * 14 13 12 16 16 C 1.39421 * 118.98044 * 359.75343 * 14 13 12 17 17 C 1.38181 * 118.34672 * 0.50590 * 16 14 13 18 18 C 1.50699 * 120.41023 * 179.76566 * 17 16 14 19 19 N 1.46501 * 109.47331 * 94.72478 * 18 17 16 20 20 C 1.36937 * 119.99947 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00153 * 359.72252 * 20 19 18 22 22 C 1.38820 * 119.99535 * 179.97438 * 20 19 18 23 23 N 1.31622 * 119.99656 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00008 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47034 * 89.99938 * 24 22 20 26 26 H 1.48503 * 109.46872 * 209.99592 * 24 22 20 27 27 H 1.48500 * 109.47086 * 329.99757 * 24 22 20 28 28 N 1.31759 * 119.09362 * 90.00546 * 12 11 10 29 29 H 1.09005 * 109.46857 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47461 * 300.00053 * 1 2 3 31 31 H 1.09003 * 109.47511 * 60.00589 * 1 2 3 32 32 H 1.08998 * 109.47681 * 239.99198 * 2 1 3 33 33 H 1.09009 * 109.46841 * 119.99552 * 2 1 3 34 34 H 1.09003 * 109.46928 * 55.30169 * 3 2 1 35 35 H 1.08998 * 109.46822 * 295.30791 * 3 2 1 36 36 H 1.09003 * 109.47412 * 305.52491 * 7 6 4 37 37 H 1.09000 * 109.47379 * 65.52277 * 7 6 4 38 38 H 1.09000 * 109.47307 * 185.52133 * 7 6 4 39 39 H 0.96993 * 120.00687 * 0.02562 * 10 8 4 40 40 H 1.09004 * 109.47280 * 60.01186 * 11 10 8 41 41 H 1.08991 * 109.47758 * 300.00522 * 11 10 8 42 42 H 0.96697 * 114.00233 * 90.00690 * 15 14 13 43 43 H 1.08004 * 120.82419 * 180.27891 * 16 14 13 44 44 H 1.08998 * 109.47071 * 334.71982 * 18 17 16 45 45 H 1.09007 * 109.47180 * 214.72440 * 18 17 16 46 46 H 0.96998 * 119.99506 * 359.97438 * 19 18 17 47 47 H 0.97001 * 119.99875 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4441 0.1181 5 1 3.8621 0.8780 1.0010 6 8 4.1340 0.8427 -1.0468 7 6 4.5580 -0.5084 -0.8552 8 6 4.0581 2.8629 0.2422 9 8 4.7477 3.3440 -0.6318 10 7 3.7323 3.5971 1.3244 11 6 4.2117 4.9762 1.4453 12 6 3.7116 5.5705 2.7367 13 7 2.5534 6.1996 2.7466 14 6 2.0824 6.7357 3.8664 15 8 0.8908 7.3812 3.8719 16 6 2.8298 6.6194 5.0376 17 6 4.0408 5.9563 4.9799 18 6 4.8890 5.8081 6.2167 19 7 4.6068 4.5179 6.8506 20 6 5.2633 4.1607 7.9980 21 1 5.9923 4.8281 8.4332 22 6 4.9955 2.9383 8.5990 23 7 5.6268 2.5947 9.7016 24 14 3.7402 1.7805 7.8420 25 1 4.4182 0.8770 6.8780 26 1 3.1026 0.9730 8.9128 27 1 2.7018 2.5710 7.1333 28 7 4.4444 5.4473 3.8248 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6095 1.9801 0.8449 35 1 1.7469 1.9315 -0.9290 36 1 5.2419 -0.5580 -0.0078 37 1 3.6897 -1.1373 -0.6584 38 1 5.0657 -0.8608 -1.7530 39 1 3.1810 3.2124 2.0236 40 1 3.8404 5.5649 0.6064 41 1 5.3016 4.9838 1.4403 42 1 0.1348 6.8098 4.0643 43 1 2.4729 7.0402 5.9660 44 1 4.6586 6.6136 6.9139 45 1 5.9429 5.8554 5.9423 46 1 3.9544 3.9170 6.4579 47 1 5.4394 1.7407 10.1217 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691422103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:01 Heat of formation + Delta-G solvation = -89.250988 kcal Electronic energy + Delta-G solvation = -29196.436136 eV Core-core repulsion = 24993.374799 eV Total energy + Delta-G solvation = -4203.061337 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.50673 -41.16663 -38.99434 -38.74109 -37.30719 -36.10992 -35.45318 -34.66270 -33.33572 -32.74216 -31.20960 -28.76387 -28.41886 -27.51859 -25.35303 -24.94456 -23.98036 -22.94785 -22.25865 -21.66189 -20.20657 -19.78750 -18.90687 -18.62262 -18.20230 -17.21335 -17.05302 -16.80071 -16.57046 -16.42727 -16.11720 -15.95296 -15.78285 -15.54925 -15.12787 -14.77415 -14.63297 -14.35333 -14.27466 -14.16156 -14.03493 -13.86885 -13.41435 -13.30840 -13.12118 -13.07101 -12.86717 -12.50070 -12.31752 -12.19267 -12.02218 -11.85185 -11.83058 -11.62273 -11.55177 -11.22229 -11.06735 -10.74354 -10.49814 -10.39963 -10.33965 -9.39202 -8.04201 -5.40541 -0.46441 -0.27033 1.33657 1.39672 1.42189 1.46404 1.64231 2.17399 2.41917 2.46382 2.61803 2.94096 3.05944 3.27873 3.48468 3.72210 3.73137 3.75974 3.83715 3.86151 4.08437 4.12700 4.19566 4.22671 4.42701 4.45076 4.50027 4.53856 4.60539 4.70721 4.78165 4.80389 4.83921 4.89883 4.96633 5.05472 5.09930 5.20884 5.27500 5.40586 5.71783 5.76721 5.97284 6.17116 6.31940 6.45800 6.83923 7.01304 7.01743 7.72885 7.92394 9.16578 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007887 B = 0.003409 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3549.143407 B = 8211.127950 C = 9860.616684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.127 4.127 4 C 0.076 3.924 5 H 0.110 0.890 6 O -0.384 6.384 7 C 0.017 3.983 8 C 0.513 3.487 9 O -0.562 6.562 10 N -0.709 5.709 11 C 0.200 3.800 12 C 0.319 3.681 13 N -0.533 5.533 14 C 0.366 3.634 15 O -0.474 6.474 16 C -0.209 4.209 17 C 0.180 3.820 18 C 0.201 3.799 19 N -0.746 5.746 20 C -0.237 4.237 21 H 0.065 0.935 22 C -0.056 4.056 23 N -0.979 5.979 24 Si 0.952 3.048 25 H -0.280 1.280 26 H -0.293 1.293 27 H -0.252 1.252 28 N -0.515 5.515 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.411 0.589 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.431 0.569 43 H 0.178 0.822 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.365 0.635 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.769 -1.617 -19.499 23.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.165 4.165 4 C 0.014 3.986 5 H 0.127 0.873 6 O -0.302 6.302 7 C -0.078 4.078 8 C 0.300 3.700 9 O -0.440 6.440 10 N -0.364 5.364 11 C 0.075 3.925 12 C 0.050 3.950 13 N -0.259 5.259 14 C 0.178 3.822 15 O -0.285 6.285 16 C -0.233 4.233 17 C 0.036 3.964 18 C 0.075 3.925 19 N -0.393 5.393 20 C -0.367 4.367 21 H 0.083 0.917 22 C -0.249 4.249 23 N -0.629 5.629 24 Si 0.779 3.221 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.177 1.177 28 N -0.232 5.232 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.247 0.753 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.295 0.705 43 H 0.195 0.805 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.198 0.802 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.514 -0.984 -21.054 24.513 hybrid contribution -1.086 -0.901 1.438 2.015 sum -13.601 -1.885 -19.617 23.945 Atomic orbital electron populations 1.21760 0.94844 1.02292 1.02033 1.21595 0.96781 0.94986 1.02735 1.22029 0.91073 0.99596 1.03768 1.22118 0.95184 0.90074 0.91189 0.87281 1.87988 1.80666 1.28519 1.33033 1.23221 0.99857 0.81522 1.03247 1.21104 0.79444 0.88636 0.80797 1.90706 1.38961 1.73207 1.41115 1.45689 1.54459 1.13063 1.23142 1.19806 0.99923 0.82281 0.90492 1.22791 0.85992 0.92299 0.93943 1.67779 1.15753 1.11268 1.31116 1.19442 0.88692 0.87030 0.87031 1.84691 1.14327 1.36427 1.93028 1.23125 0.96474 1.02333 1.01364 1.21837 0.92127 0.89369 0.93104 1.19709 0.96289 0.88916 0.87598 1.42417 1.49656 1.18389 1.28790 1.18989 1.16697 1.01366 0.99687 0.91716 1.25451 1.02060 0.99503 0.97842 1.69870 1.47117 1.23728 1.22192 0.85460 0.79682 0.79236 0.77701 1.20594 1.21986 1.17671 1.68123 1.35251 1.20458 0.99325 0.91899 0.92405 0.92774 0.91349 0.90965 0.89298 0.91322 0.93342 0.91566 0.88435 0.75328 0.88187 0.88982 0.70507 0.80452 0.91248 0.93533 0.80219 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.12 -1.44 4.94 30.59 0.15 -1.29 16 3 C -0.13 -1.85 4.89 30.59 0.15 -1.70 16 4 C 0.08 1.43 2.68 29.85 0.08 1.51 16 5 H 0.11 1.63 7.60 -2.39 -0.02 1.61 16 6 O -0.38 -8.55 9.65 -129.99 -1.25 -9.81 16 7 C 0.02 0.25 10.47 113.37 1.19 1.44 16 8 C 0.51 12.80 7.18 87.66 0.63 13.43 16 9 O -0.56 -18.93 16.51 15.96 0.26 -18.67 16 10 N -0.71 -15.37 5.45 -466.78 -2.54 -17.91 16 11 C 0.20 4.80 6.10 85.63 0.52 5.32 16 12 C 0.32 8.29 7.01 138.76 0.97 9.26 16 13 N -0.53 -13.09 10.36 -300.69 -3.12 -16.21 16 14 C 0.37 8.11 7.83 84.83 0.66 8.77 16 15 O -0.47 -7.83 13.58 -88.24 -1.20 -9.03 16 16 C -0.21 -4.93 9.79 22.54 0.22 -4.71 16 17 C 0.18 5.30 6.18 42.44 0.26 5.56 16 18 C 0.20 7.04 6.61 85.63 0.57 7.61 16 19 N -0.75 -32.55 5.40 -347.17 -1.87 -34.43 16 20 C -0.24 -12.80 10.48 84.04 0.88 -11.92 16 21 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 22 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 23 N -0.98 -60.44 13.97 21.65 0.30 -60.14 16 24 Si 0.95 42.80 27.74 68.60 1.90 44.70 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 27 H -0.25 -9.99 6.52 99.48 0.65 -9.34 16 28 N -0.51 -15.46 10.27 -176.24 -1.81 -17.27 16 29 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.83 6.53 -2.39 -0.02 0.81 16 33 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.09 1.07 7.77 -2.39 -0.02 1.06 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 0.67 8.00 -2.39 -0.02 0.65 16 37 H 0.07 0.70 6.03 -2.39 -0.01 0.68 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.41 7.44 8.17 -92.71 -0.76 6.68 16 40 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 41 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.43 2.56 9.06 -74.06 -0.67 1.89 16 43 H 0.18 3.42 8.06 -2.91 -0.02 3.40 16 44 H 0.07 2.23 8.06 -2.39 -0.02 2.21 16 45 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.36 15.36 5.52 -92.71 -0.51 14.85 16 47 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -76.63 397.67 -2.83 -79.47 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.98 Total: 29.63 kcal Atomic # 6 Polarization: 22.21 SS G_CDS: 7.47 Total: 29.67 kcal Atomic # 7 Polarization: -136.93 SS G_CDS: -9.04 Total: -145.97 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -2.19 Total: -37.50 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.90 Total: 44.70 kcal Total: -76.63 -2.83 -79.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691422103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.782 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds