Wall clock time and date at job start Tue Mar 31 2020 20:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46912 * 2 1 4 4 C 1.50699 * 109.46914 * 180.02562 * 3 2 1 5 5 C 1.35319 * 126.66688 * 90.00228 * 4 3 2 6 6 C 1.42270 * 103.92248 * 179.97438 * 5 4 3 7 7 C 1.48331 * 126.93972 * 180.02562 * 6 5 4 8 8 O 1.21497 * 119.99748 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00268 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00080 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46996 * 35.00503 * 10 9 7 12 12 C 1.52994 * 109.47359 * 275.00294 * 10 9 7 13 13 C 1.53006 * 109.46914 * 154.99872 * 10 9 7 14 14 N 1.46898 * 109.47138 * 305.00206 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00058 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00409 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47138 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47229 * 119.99992 * 23 21 19 26 26 H 1.48497 * 109.47429 * 239.99972 * 23 21 19 27 27 N 1.30991 * 106.12210 * 0.25976 * 6 5 4 28 28 O 1.20904 * 111.43872 * 359.53941 * 27 6 5 29 29 H 1.09001 * 109.46889 * 299.99667 * 1 2 3 30 30 H 1.08995 * 109.47606 * 59.99381 * 1 2 3 31 31 H 1.09002 * 109.47270 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46889 * 240.00333 * 2 1 3 33 33 H 1.08995 * 109.47670 * 119.99833 * 2 1 3 34 34 H 1.09001 * 109.47072 * 60.00445 * 3 2 1 35 35 H 1.09002 * 109.46975 * 299.99998 * 3 2 1 36 36 H 1.07998 * 128.03478 * 359.97438 * 5 4 3 37 37 H 0.97006 * 119.99482 * 359.97438 * 9 7 6 38 38 H 1.09006 * 109.46971 * 299.99615 * 12 10 9 39 39 H 1.08990 * 109.47506 * 59.99735 * 12 10 9 40 40 H 1.09002 * 109.47542 * 180.02562 * 12 10 9 41 41 H 1.08997 * 109.46770 * 185.00153 * 13 10 9 42 42 H 1.08995 * 109.47019 * 65.00366 * 13 10 9 43 43 H 1.00904 * 110.99913 * 303.95145 * 14 13 10 44 44 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 45 45 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 46 46 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 47 47 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3546 1.4428 -1.0864 6 6 5.6669 1.4433 -0.5369 7 6 6.9470 1.4442 -1.2862 8 8 6.9398 1.4442 -2.5011 9 7 8.1182 1.4452 -0.6193 10 6 9.3825 1.4455 -1.3593 11 1 9.2705 2.0346 -2.2696 12 6 9.7599 0.0086 -1.7249 13 6 10.4827 2.0562 -0.4889 14 7 10.0668 3.3913 -0.0392 15 6 11.1014 4.0099 0.8006 16 6 10.6405 5.3753 1.2414 17 8 9.5566 5.7919 0.8909 18 7 11.4327 6.1334 2.0251 19 6 11.0131 7.3753 2.4266 20 1 10.0480 7.7463 2.1145 21 6 11.8295 8.1568 3.2350 22 7 13.0037 7.7052 3.6151 23 14 11.2583 9.8492 3.7814 24 1 9.9094 10.1207 3.2226 25 1 11.1978 9.8963 5.2644 26 1 12.2131 10.8759 3.2921 27 7 5.5164 1.4377 0.7643 28 8 4.3477 1.4430 1.0740 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 4.0692 1.4426 -2.1280 37 1 8.1239 1.4456 0.3508 38 1 9.8720 -0.5804 -0.8146 39 1 8.9762 -0.4264 -2.3449 40 1 10.7008 0.0088 -2.2751 41 1 11.4016 2.1382 -1.0693 42 1 10.6562 1.4185 0.3779 43 1 9.8378 3.9823 -0.8243 44 1 11.2795 3.3859 1.6764 45 1 12.0244 4.1055 0.2287 46 1 12.2993 5.8001 2.3057 47 1 13.5738 8.2508 4.1791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699382829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:02 Heat of formation + Delta-G solvation = -25.823539 kcal Electronic energy + Delta-G solvation = -28334.707517 eV Core-core repulsion = 24134.396601 eV Total energy + Delta-G solvation = -4200.310916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.22627 -39.82754 -38.30761 -36.73059 -36.09179 -34.34659 -34.09002 -33.64915 -32.03277 -31.23732 -30.85516 -27.61747 -27.39205 -25.35095 -24.80229 -23.25098 -22.99591 -22.15644 -21.17336 -20.16749 -19.24469 -17.98334 -17.89913 -17.73831 -17.00223 -16.65591 -15.87047 -15.62039 -15.19427 -15.06418 -14.76250 -14.55084 -14.36340 -14.08553 -13.93569 -13.86064 -13.68910 -13.51150 -13.24072 -12.83050 -12.61851 -12.56174 -12.06757 -12.03067 -11.83750 -11.80549 -11.67563 -11.55001 -11.49069 -11.14906 -11.05946 -10.99567 -10.58563 -10.34285 -10.32017 -10.22551 -9.64241 -9.52134 -9.16517 -8.48833 -8.11043 -7.96209 -6.41952 -3.82617 1.00421 1.49255 2.70537 2.89919 3.13281 3.16340 3.26871 3.34428 3.84195 3.90449 4.04025 4.19851 4.29389 4.51136 4.51330 4.71717 4.75875 4.81619 4.98912 5.03164 5.08724 5.16765 5.20221 5.24367 5.26985 5.29126 5.31665 5.42195 5.52487 5.55264 5.58042 5.68501 5.71479 5.76461 5.81026 5.85058 5.94862 6.00633 6.24845 6.37104 7.12760 7.37359 7.55412 7.57957 7.87206 8.06351 8.06687 8.61117 9.18001 9.54089 10.05644 10.75846 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010586 B = 0.002225 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.330925 B =12581.782745 C =14768.070306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.039 4.039 4 C -0.034 4.034 5 C -0.182 4.182 6 C -0.023 4.023 7 C 0.602 3.398 8 O -0.532 6.532 9 N -0.689 5.689 10 C 0.145 3.855 11 H 0.090 0.910 12 C -0.162 4.162 13 C 0.048 3.952 14 N -0.668 5.668 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 N -0.324 5.324 28 O 0.124 5.876 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.179 0.821 37 H 0.412 0.588 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.351 0.649 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.850 -19.038 -8.042 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.078 4.078 4 C -0.097 4.097 5 C -0.204 4.204 6 C -0.182 4.182 7 C 0.385 3.615 8 O -0.408 6.408 9 N -0.340 5.340 10 C 0.040 3.960 11 H 0.108 0.892 12 C -0.220 4.220 13 C -0.082 4.082 14 N -0.300 5.300 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.466 6.466 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 N -0.024 5.024 28 O 0.048 5.952 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.196 0.804 37 H 0.248 0.752 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.170 0.830 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.837 -18.890 -7.506 25.768 hybrid contribution 0.850 0.978 -0.365 1.346 sum -14.986 -17.913 -7.871 24.646 Atomic orbital electron populations 1.21768 0.94814 1.02197 1.02238 1.21568 0.96396 0.94994 1.03144 1.20269 0.83272 0.99020 1.05191 1.24483 0.96198 1.03455 0.85540 1.22397 0.89736 1.06857 1.01406 1.23488 0.96769 1.07812 0.90173 1.16825 0.81715 0.76650 0.86260 1.90775 1.86854 1.50638 1.12528 1.45699 1.04461 1.72689 1.11195 1.21051 0.82525 0.96847 0.95600 0.89203 1.22147 1.02116 0.95775 1.02003 1.22318 0.95374 0.91952 0.98604 1.60064 1.41518 1.03000 1.25461 1.21679 0.92739 0.95774 0.97973 1.19801 0.86674 0.86692 0.84272 1.90536 1.22554 1.73684 1.59802 1.41862 1.18218 1.15856 1.44127 1.19753 1.03826 0.91593 1.27608 0.87902 1.25265 0.95396 1.00216 0.97131 1.69622 1.09689 1.38494 1.36523 0.85797 0.78884 0.81385 0.78269 1.19228 1.20723 1.20770 1.74227 0.97125 1.15501 1.15565 1.84795 1.11114 1.65859 1.33452 0.92301 0.92377 0.92288 0.91304 0.91238 0.88946 0.88238 0.80373 0.75153 0.92160 0.91813 0.91256 0.93559 0.90307 0.82965 0.89549 0.93770 0.77477 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.22 16 2 C -0.12 -0.60 5.92 -26.73 -0.16 -0.76 16 3 C -0.04 -0.22 5.78 -27.88 -0.16 -0.38 16 4 C -0.03 -0.32 6.73 -35.35 -0.24 -0.55 16 5 C -0.18 -1.99 10.92 -39.07 -0.43 -2.42 16 6 C -0.02 -0.32 7.19 -82.52 -0.59 -0.91 16 7 C 0.60 8.90 7.81 -12.11 -0.09 8.81 16 8 O -0.53 -8.90 16.61 5.37 0.09 -8.81 16 9 N -0.69 -9.13 4.80 -54.60 -0.26 -9.39 16 10 C 0.14 1.69 2.81 -67.93 -0.19 1.50 16 11 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 12 C -0.16 -1.53 9.48 37.15 0.35 -1.18 16 13 C 0.05 0.56 5.24 -3.82 -0.02 0.54 16 14 N -0.67 -10.67 5.85 -115.05 -0.67 -11.35 16 15 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 16 C 0.44 10.51 7.82 -10.99 -0.09 10.43 16 17 O -0.58 -16.13 15.78 5.55 0.09 -16.04 16 18 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 19 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 20 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 23 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 N -0.32 -4.49 11.84 33.30 0.39 -4.10 16 28 O 0.12 1.47 11.18 17.24 0.19 1.66 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.41 5.50 8.36 -40.82 -0.34 5.15 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.35 6.07 8.43 -39.29 -0.33 5.74 16 44 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 406.02 15.07 6.12 6.12 Total: -1.00 -34.09 406.02 -7.17 -41.26 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -7.24 Total: 15.22 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -1.52 Total: 7.62 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 0.13 Total: -63.31 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.37 Total: -23.19 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.09 -7.17 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699382829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.440 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds