Wall clock time and date at job start Tue Mar 31 2020 20:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29946 * 126.28262 * 90.02882 * 3 2 1 5 5 O 1.21300 * 110.24653 * 179.97438 * 4 3 2 6 6 C 1.33639 * 109.81661 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.55487 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47490 * 269.98168 * 7 6 5 9 9 C 1.42895 * 114.00495 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47635 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99511 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00245 * 179.97438 * 10 9 8 13 13 C 1.47017 * 125.65009 * 179.71747 * 12 10 9 14 14 C 1.54331 * 107.26870 * 178.85234 * 13 12 10 15 15 H 1.09001 * 110.51634 * 96.45248 * 14 13 12 16 16 C 1.53000 * 111.00529 * 219.60316 * 14 13 12 17 17 C 1.55156 * 103.01967 * 338.13942 * 14 13 12 18 18 H 1.09001 * 111.03768 * 153.38998 * 17 14 13 19 19 N 1.46493 * 111.00568 * 277.23499 * 17 14 13 20 20 C 1.36941 * 120.00152 * 198.64823 * 19 17 14 21 21 H 1.08000 * 119.99741 * 359.97438 * 20 19 17 22 22 C 1.38806 * 120.00381 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00567 * 180.02562 * 22 20 19 24 24 Si 1.86810 * 119.99924 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.46944 * 89.99848 * 24 22 20 26 26 H 1.48498 * 109.46992 * 209.99705 * 24 22 20 27 27 H 1.48493 * 109.46810 * 329.99969 * 24 22 20 28 28 C 1.47421 * 125.64563 * 0.02866 * 12 10 9 29 29 N 1.31140 * 106.89456 * 359.77589 * 6 5 4 30 30 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 31 31 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 32 32 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 33 33 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 34 34 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 35 35 H 1.08996 * 109.46950 * 29.98168 * 7 6 5 36 36 H 1.09001 * 109.47200 * 149.97819 * 7 6 5 37 37 H 1.09007 * 109.47069 * 300.00138 * 9 8 7 38 38 H 1.09010 * 109.47032 * 59.99564 * 9 8 7 39 39 H 1.09004 * 109.88468 * 298.39951 * 13 12 10 40 40 H 1.08997 * 109.88041 * 59.55804 * 13 12 10 41 41 H 1.08993 * 109.47489 * 173.78105 * 16 14 13 42 42 H 1.08999 * 109.46723 * 293.78002 * 16 14 13 43 43 H 1.09000 * 109.47162 * 53.77722 * 16 14 13 44 44 H 0.96999 * 120.00634 * 18.64574 * 19 17 14 45 45 H 0.96998 * 120.00915 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.37231 * 322.92709 * 28 12 10 47 47 H 1.09003 * 110.37233 * 85.25346 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6781 3.2447 0.7124 6 6 2.7077 3.3277 -0.6211 7 6 3.1300 4.5223 -1.4368 8 8 1.9931 5.3486 -1.6954 9 6 2.2860 6.5157 -2.4661 10 6 1.0218 7.3083 -2.6778 11 8 -0.0266 6.9128 -2.2138 12 7 1.0566 8.4571 -3.3817 13 6 -0.0974 9.3220 -3.6677 14 6 0.4244 10.5304 -4.4735 15 1 0.2827 10.3671 -5.5418 16 6 -0.2627 11.8234 -4.0297 17 6 1.9345 10.5616 -4.1184 18 1 2.5150 11.0224 -4.9176 19 7 2.1604 11.2498 -2.8451 20 6 3.4075 11.7223 -2.5339 21 1 4.2246 11.5871 -3.2271 22 6 3.6215 12.3749 -1.3277 23 7 4.8200 12.8295 -1.0288 24 14 2.2083 12.6081 -0.1283 25 1 2.1465 11.4471 0.7955 26 1 2.4230 13.8521 0.6537 27 1 0.9323 12.7104 -0.8809 28 6 2.2568 9.0511 -3.9979 29 7 2.3032 2.1694 -1.0841 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 1.8932 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8763 5.0936 -0.8849 36 1 3.5563 4.1849 -2.3816 37 1 3.0147 7.1283 -1.9351 38 1 2.6951 6.2199 -3.4322 39 1 -0.8353 8.7739 -4.2537 40 1 -0.5433 9.6657 -2.7344 41 1 0.1999 12.6721 -4.5334 42 1 -1.3207 11.7798 -4.2886 43 1 -0.1571 11.9393 -2.9511 44 1 1.4267 11.3710 -2.2223 45 1 4.9696 13.2852 -0.1858 46 1 3.1265 8.8986 -3.3587 47 1 2.4298 8.6203 -4.9842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700272800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:15 Heat of formation + Delta-G solvation = 12.661440 kcal Electronic energy + Delta-G solvation = -29234.851208 eV Core-core repulsion = 25036.209125 eV Total energy + Delta-G solvation = -4198.642082 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.84373 -40.04594 -38.49805 -37.31826 -36.61833 -34.13829 -34.06803 -32.61948 -31.95472 -30.94895 -29.29663 -28.24907 -27.39722 -25.43037 -25.38529 -23.74555 -23.45885 -22.02787 -21.44272 -19.51640 -19.35329 -18.42255 -18.02548 -17.78891 -17.12874 -16.76165 -16.41789 -15.84200 -15.74214 -15.16509 -14.80060 -14.60143 -14.39101 -14.17297 -14.01030 -13.39247 -13.31206 -13.10069 -12.87418 -12.78412 -12.52762 -12.37136 -12.22802 -12.08757 -12.01285 -11.80364 -11.69504 -11.59879 -11.55180 -11.25851 -11.08946 -10.86328 -10.64311 -10.36714 -10.28451 -10.13123 -10.10662 -9.68999 -9.64611 -9.14038 -8.42004 -7.41260 -5.90384 -3.27367 0.75811 1.85776 2.35415 2.74736 2.88608 3.27907 3.29435 3.33850 3.40041 3.69661 3.94150 4.44742 4.48132 4.57064 4.68509 4.76561 4.80496 4.86171 4.90515 4.95433 4.98695 5.05360 5.06637 5.16923 5.24991 5.38551 5.45737 5.46583 5.55505 5.56765 5.69854 5.70940 5.78349 5.80339 5.92364 5.97425 6.12113 6.15549 6.27831 6.35705 6.50151 6.61354 6.66148 7.68900 7.83996 7.88612 8.28309 8.31993 9.05881 9.78757 9.97224 11.27058 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.002489 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.497101 B =11246.080290 C =12274.916798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.031 4.031 3 C 0.168 3.832 4 N -0.379 5.379 5 O 0.090 5.910 6 C 0.190 3.810 7 C 0.155 3.845 8 O -0.358 6.358 9 C 0.051 3.949 10 C 0.531 3.469 11 O -0.533 6.533 12 N -0.604 5.604 13 C 0.117 3.883 14 C -0.115 4.115 15 H 0.086 0.914 16 C -0.135 4.135 17 C 0.178 3.822 18 H 0.081 0.919 19 N -0.735 5.735 20 C -0.252 4.252 21 H 0.093 0.907 22 C 0.012 3.988 23 N -0.928 5.928 24 Si 0.878 3.122 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.276 1.276 28 C 0.064 3.936 29 N -0.462 5.462 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.364 0.636 45 H 0.261 0.739 46 H 0.085 0.915 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 -18.871 -5.614 20.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.070 4.070 3 C -0.104 4.104 4 N -0.085 5.085 5 O 0.030 5.970 6 C -0.031 4.031 7 C 0.076 3.924 8 O -0.275 6.275 9 C -0.028 4.028 10 C 0.318 3.682 11 O -0.409 6.409 12 N -0.339 5.339 13 C -0.005 4.005 14 C -0.135 4.135 15 H 0.104 0.896 16 C -0.193 4.193 17 C 0.066 3.934 18 H 0.099 0.901 19 N -0.377 5.377 20 C -0.381 4.381 21 H 0.111 0.889 22 C -0.184 4.184 23 N -0.575 5.575 24 Si 0.708 3.292 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.203 1.203 28 C -0.061 4.061 29 N -0.197 5.197 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.199 0.801 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.357 -19.690 -4.713 20.943 hybrid contribution -0.538 0.478 0.906 1.157 sum -5.895 -19.212 -3.807 20.453 Atomic orbital electron populations 1.21754 0.93158 1.02830 1.02988 1.19945 0.96960 0.85421 1.04682 1.25935 1.00527 1.00578 0.83401 1.74654 1.16962 0.92915 1.23929 1.85322 1.60069 1.27059 1.24587 1.28172 0.96694 0.96134 0.82143 1.20605 0.88819 0.85536 0.97429 1.88017 1.30590 1.35066 1.73813 1.22275 0.96662 0.86941 0.96956 1.19616 0.89908 0.80349 0.78347 1.90718 1.32189 1.68932 1.49089 1.48255 1.11176 1.21730 1.52775 1.21966 0.88309 0.90602 0.99631 1.22534 0.97090 0.94336 0.99543 0.89600 1.21642 0.98884 0.96420 1.02324 1.21311 0.92448 0.89343 0.90289 0.90119 1.42745 1.09679 1.67796 1.17515 1.19021 0.86435 1.30271 1.02387 0.88920 1.24640 0.96024 1.00095 0.97690 1.69680 1.20122 1.43222 1.24449 0.86676 0.82703 0.77767 0.82040 1.20976 1.21591 1.20255 1.23465 0.87936 0.97639 0.97092 1.71884 1.16282 1.02133 1.29446 0.90967 0.92240 0.91798 0.88500 0.89025 0.88538 0.87943 0.88761 0.89557 0.91881 0.91685 0.91625 0.93242 0.92121 0.80120 0.92884 0.89647 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.78 16 2 C -0.03 -0.25 6.56 -27.88 -0.18 -0.44 16 3 C 0.17 2.04 7.47 -156.37 -1.17 0.87 16 4 N -0.38 -5.12 12.16 30.90 0.38 -4.75 16 5 O 0.09 1.20 11.31 18.11 0.20 1.40 16 6 C 0.19 2.32 8.14 -13.05 -0.11 2.22 16 7 C 0.15 1.49 6.56 36.00 0.24 1.73 16 8 O -0.36 -4.95 9.86 -55.14 -0.54 -5.49 16 9 C 0.05 0.63 5.42 36.01 0.20 0.83 16 10 C 0.53 8.78 7.93 -10.99 -0.09 8.70 16 11 O -0.53 -10.97 16.83 -14.35 -0.24 -11.21 16 12 N -0.60 -9.24 3.33 -170.52 -0.57 -9.81 16 13 C 0.12 1.72 6.47 -3.06 -0.02 1.70 16 14 C -0.12 -1.53 3.40 -88.78 -0.30 -1.83 16 15 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.13 -1.85 8.73 37.16 0.32 -1.53 16 17 C 0.18 2.82 3.44 -65.78 -0.23 2.60 16 18 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 19 N -0.73 -15.26 4.54 -51.35 -0.23 -15.50 16 20 C -0.25 -6.35 10.47 -15.06 -0.16 -6.51 16 21 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 22 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 23 N -0.93 -27.45 13.97 55.49 0.78 -26.68 16 24 Si 0.88 21.27 27.74 -169.99 -4.71 16.56 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.28 6.52 56.52 0.37 -5.92 16 28 C 0.06 0.90 6.38 -2.53 -0.02 0.88 16 29 N -0.46 -5.98 11.55 -9.87 -0.11 -6.09 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 38 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.06 7.78 -51.93 -0.40 0.65 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.98 6.37 -51.93 -0.33 0.65 16 44 H 0.36 7.83 3.95 -40.82 -0.16 7.67 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.09 1.27 7.48 -51.93 -0.39 0.88 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -34.81 392.15 -7.59 -42.40 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.20 Total: 4.57 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -1.24 Total: 8.68 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: 0.24 Total: -62.82 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.58 Total: -15.30 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.71 Total: 16.56 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.81 -7.59 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700272800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.064 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds