Wall clock time and date at job start Tue Mar 31 2020 20:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29946 * 126.28262 * 90.02882 * 3 2 1 5 5 O 1.21300 * 110.24653 * 179.97438 * 4 3 2 6 6 C 1.33639 * 109.81661 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.55487 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47490 * 269.98168 * 7 6 5 9 9 C 1.42895 * 114.00495 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47635 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99511 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00245 * 179.97438 * 10 9 8 13 13 C 1.47017 * 125.65009 * 179.71747 * 12 10 9 14 14 C 1.54331 * 107.26870 * 178.85234 * 13 12 10 15 15 H 1.09001 * 110.51634 * 96.45248 * 14 13 12 16 16 C 1.53000 * 111.00529 * 219.60316 * 14 13 12 17 17 C 1.55156 * 103.01967 * 338.13942 * 14 13 12 18 18 H 1.09001 * 111.03768 * 153.38998 * 17 14 13 19 19 N 1.46493 * 111.00568 * 277.23499 * 17 14 13 20 20 C 1.36941 * 120.00152 * 198.64823 * 19 17 14 21 21 H 1.08000 * 119.99741 * 359.97438 * 20 19 17 22 22 C 1.38806 * 120.00381 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00567 * 180.02562 * 22 20 19 24 24 Si 1.86810 * 119.99924 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.46944 * 89.99848 * 24 22 20 26 26 H 1.48498 * 109.46992 * 209.99705 * 24 22 20 27 27 H 1.48493 * 109.46810 * 329.99969 * 24 22 20 28 28 C 1.47421 * 125.64563 * 0.02866 * 12 10 9 29 29 N 1.31140 * 106.89456 * 359.77589 * 6 5 4 30 30 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 31 31 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 32 32 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 33 33 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 34 34 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 35 35 H 1.08996 * 109.46950 * 29.98168 * 7 6 5 36 36 H 1.09001 * 109.47200 * 149.97819 * 7 6 5 37 37 H 1.09007 * 109.47069 * 300.00138 * 9 8 7 38 38 H 1.09010 * 109.47032 * 59.99564 * 9 8 7 39 39 H 1.09004 * 109.88468 * 298.39951 * 13 12 10 40 40 H 1.08997 * 109.88041 * 59.55804 * 13 12 10 41 41 H 1.08993 * 109.47489 * 173.78105 * 16 14 13 42 42 H 1.08999 * 109.46723 * 293.78002 * 16 14 13 43 43 H 1.09000 * 109.47162 * 53.77722 * 16 14 13 44 44 H 0.96999 * 120.00634 * 18.64574 * 19 17 14 45 45 H 0.96998 * 120.00915 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.37231 * 322.92709 * 28 12 10 47 47 H 1.09003 * 110.37233 * 85.25346 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6781 3.2447 0.7124 6 6 2.7077 3.3277 -0.6211 7 6 3.1300 4.5223 -1.4368 8 8 1.9931 5.3486 -1.6954 9 6 2.2860 6.5157 -2.4661 10 6 1.0218 7.3083 -2.6778 11 8 -0.0266 6.9128 -2.2138 12 7 1.0566 8.4571 -3.3817 13 6 -0.0974 9.3220 -3.6677 14 6 0.4244 10.5304 -4.4735 15 1 0.2827 10.3671 -5.5418 16 6 -0.2627 11.8234 -4.0297 17 6 1.9345 10.5616 -4.1184 18 1 2.5150 11.0224 -4.9176 19 7 2.1604 11.2498 -2.8451 20 6 3.4075 11.7223 -2.5339 21 1 4.2246 11.5871 -3.2271 22 6 3.6215 12.3749 -1.3277 23 7 4.8200 12.8295 -1.0288 24 14 2.2083 12.6081 -0.1283 25 1 2.1465 11.4471 0.7955 26 1 2.4230 13.8521 0.6537 27 1 0.9323 12.7104 -0.8809 28 6 2.2568 9.0511 -3.9979 29 7 2.3032 2.1694 -1.0841 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 1.8932 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8763 5.0936 -0.8849 36 1 3.5563 4.1849 -2.3816 37 1 3.0147 7.1283 -1.9351 38 1 2.6951 6.2199 -3.4322 39 1 -0.8353 8.7739 -4.2537 40 1 -0.5433 9.6657 -2.7344 41 1 0.1999 12.6721 -4.5334 42 1 -1.3207 11.7798 -4.2886 43 1 -0.1571 11.9393 -2.9511 44 1 1.4267 11.3710 -2.2223 45 1 4.9696 13.2852 -0.1858 46 1 3.1265 8.8986 -3.3587 47 1 2.4298 8.6203 -4.9842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700272800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:14 Heat of formation + Delta-G solvation = -12.733300 kcal Electronic energy + Delta-G solvation = -29235.952406 eV Core-core repulsion = 25036.209125 eV Total energy + Delta-G solvation = -4199.743281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.77621 -41.24918 -39.56335 -38.51543 -37.49317 -35.73595 -34.96891 -34.02880 -32.78581 -32.62763 -30.27209 -29.62406 -28.35568 -26.47751 -26.17430 -25.49062 -24.31301 -23.35604 -22.25234 -20.82220 -20.51876 -19.74100 -19.37767 -18.82269 -18.19621 -17.84032 -17.41177 -16.95227 -16.85390 -16.26521 -16.14845 -15.80677 -15.55906 -15.36441 -14.98968 -14.69662 -14.46086 -14.14173 -14.01578 -13.95313 -13.81496 -13.51169 -13.21492 -13.18525 -13.09196 -13.04276 -12.88393 -12.71457 -12.54809 -12.39261 -12.24442 -12.12251 -12.05330 -11.91345 -11.58618 -11.38794 -11.23016 -11.06183 -10.97572 -10.86467 -9.73987 -9.19628 -7.99372 -5.29786 -0.17381 0.95239 1.34898 1.38380 1.43175 1.47300 1.53413 1.85694 2.44388 2.48005 2.86921 3.01500 3.31802 3.42871 3.61701 3.70923 3.81055 3.89247 4.04423 4.06233 4.10755 4.15808 4.17898 4.21070 4.28330 4.36566 4.40509 4.63657 4.64858 4.66770 4.78538 4.80317 4.84230 4.86396 4.95559 4.98560 4.98995 5.18393 5.19126 5.21895 5.36657 5.48478 5.74520 5.85040 6.25924 6.49784 6.95680 7.09745 7.11930 7.89506 8.05282 9.21519 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.002489 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.497101 B =11246.080290 C =12274.916798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.033 4.033 3 C 0.167 3.833 4 N -0.403 5.403 5 O 0.072 5.928 6 C 0.188 3.812 7 C 0.152 3.848 8 O -0.393 6.393 9 C 0.056 3.944 10 C 0.519 3.481 11 O -0.585 6.585 12 N -0.605 5.605 13 C 0.112 3.888 14 C -0.099 4.099 15 H 0.124 0.876 16 C -0.135 4.135 17 C 0.162 3.838 18 H 0.092 0.908 19 N -0.741 5.741 20 C -0.211 4.211 21 H 0.077 0.923 22 C -0.054 4.054 23 N -0.978 5.978 24 Si 0.928 3.072 25 H -0.293 1.293 26 H -0.300 1.300 27 H -0.256 1.256 28 C 0.072 3.928 29 N -0.480 5.480 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.105 0.895 38 H 0.128 0.872 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.361 0.639 45 H 0.254 0.746 46 H 0.077 0.923 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 -20.322 -7.976 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 C -0.106 4.106 4 N -0.112 5.112 5 O 0.015 5.985 6 C -0.033 4.033 7 C 0.074 3.926 8 O -0.311 6.311 9 C -0.022 4.022 10 C 0.308 3.692 11 O -0.465 6.465 12 N -0.338 5.338 13 C -0.010 4.010 14 C -0.118 4.118 15 H 0.142 0.858 16 C -0.193 4.193 17 C 0.052 3.948 18 H 0.110 0.890 19 N -0.384 5.384 20 C -0.342 4.342 21 H 0.095 0.905 22 C -0.246 4.246 23 N -0.629 5.629 24 Si 0.758 3.242 25 H -0.220 1.220 26 H -0.227 1.227 27 H -0.181 1.181 28 C -0.052 4.052 29 N -0.216 5.216 30 H 0.118 0.882 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.123 0.877 38 H 0.145 0.855 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.195 0.805 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.862 -21.137 -7.144 23.068 hybrid contribution -0.424 0.870 1.498 1.784 sum -6.286 -20.267 -5.645 21.957 Atomic orbital electron populations 1.21738 0.92817 1.04222 1.01546 1.20202 0.97108 0.83484 1.06323 1.26679 0.99318 1.01757 0.82879 1.74643 1.18391 0.93327 1.24877 1.85285 1.60600 1.27261 1.25309 1.28800 0.95760 0.96825 0.81937 1.21026 0.87948 0.84641 0.98954 1.87952 1.32924 1.35809 1.74443 1.22339 0.94377 0.86480 0.99004 1.20436 0.90692 0.80633 0.77454 1.90688 1.34351 1.70320 1.51164 1.48389 1.11753 1.21409 1.52286 1.22057 0.88714 0.91274 0.98999 1.22520 0.94544 0.93353 1.01373 0.85764 1.21634 1.00650 0.96660 1.00328 1.21682 0.94803 0.90111 0.88182 0.89002 1.42823 1.07839 1.68303 1.19397 1.19065 0.87533 1.26874 1.00775 0.90485 1.25201 0.97615 1.01907 0.99831 1.69811 1.22103 1.46023 1.24950 0.85831 0.81512 0.76585 0.80249 1.22021 1.22749 1.18114 1.23434 0.86914 0.95841 0.99000 1.71908 1.17018 1.02693 1.29940 0.88155 0.93612 0.93236 0.86748 0.87436 0.85947 0.84728 0.87737 0.85496 0.90529 0.94073 0.91678 0.90838 0.95034 0.80530 0.93647 0.90486 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.89 71.98 0.71 -1.37 16 2 C -0.03 -0.49 6.56 29.85 0.20 -0.29 16 3 C 0.17 3.97 7.47 138.47 1.03 5.00 16 4 N -0.40 -10.99 12.16 -60.33 -0.73 -11.72 16 5 O 0.07 1.94 11.31 74.87 0.85 2.79 16 6 C 0.19 4.48 8.14 88.38 0.72 5.20 16 7 C 0.15 2.62 6.56 71.23 0.47 3.09 16 8 O -0.39 -10.32 9.86 -129.94 -1.28 -11.60 16 9 C 0.06 1.27 5.42 71.24 0.39 1.65 16 10 C 0.52 16.41 7.93 87.66 0.69 17.11 16 11 O -0.58 -24.12 16.83 16.01 0.27 -23.85 16 12 N -0.60 -17.00 3.33 -811.78 -2.70 -19.69 16 13 C 0.11 3.02 6.47 86.73 0.56 3.59 16 14 C -0.10 -2.27 3.40 -9.60 -0.03 -2.30 16 15 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 16 C -0.13 -3.35 8.73 71.98 0.63 -2.72 16 17 C 0.16 4.62 3.44 46.39 0.16 4.78 16 18 H 0.09 2.50 8.13 -2.39 -0.02 2.48 16 19 N -0.74 -29.58 4.54 -316.38 -1.44 -31.01 16 20 C -0.21 -10.52 10.47 84.03 0.88 -9.64 16 21 H 0.08 4.06 8.06 -2.91 -0.02 4.04 16 22 C -0.05 -2.95 5.50 84.86 0.47 -2.49 16 23 N -0.98 -59.12 13.97 21.65 0.30 -58.82 16 24 Si 0.93 44.52 27.74 68.60 1.90 46.43 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 27 H -0.26 -11.22 6.52 99.48 0.65 -10.57 16 28 C 0.07 1.75 6.38 86.86 0.55 2.30 16 29 N -0.48 -12.09 11.55 -303.21 -3.50 -15.59 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 2.11 7.85 -2.38 -0.02 2.09 16 38 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.04 1.31 7.78 -2.39 -0.02 1.29 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.03 0.96 6.37 -2.39 -0.02 0.94 16 44 H 0.36 15.05 3.95 -92.71 -0.37 14.69 16 45 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 46 H 0.08 2.04 7.48 -2.39 -0.02 2.02 16 47 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -79.25 392.15 1.65 -77.59 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.56 Total: 21.57 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: 7.43 Total: 23.91 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -8.07 Total: -136.84 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.17 Total: -32.66 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.43 kcal Total: -79.25 1.65 -77.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700272800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.860 kcal (2) G-P(sol) polarization free energy of solvation -79.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds