Wall clock time and date at job start Tue Mar 31 2020 20:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46866 * 2 1 4 4 N 1.29941 * 125.37745 * 90.00464 * 3 2 1 5 5 C 1.36062 * 108.47645 * 179.97438 * 4 3 2 6 6 C 1.47416 * 126.45058 * 179.97438 * 5 4 3 7 7 O 1.21615 * 120.00299 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99866 * 0.04052 * 6 5 4 9 9 C 1.46502 * 120.00013 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46840 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46667 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.47000 * 304.99740 * 11 10 9 13 13 C 1.53003 * 109.46666 * 185.00103 * 11 10 9 14 14 N 1.46897 * 109.46912 * 65.00089 * 11 10 9 15 15 C 1.46902 * 110.99391 * 204.99772 * 14 11 10 16 16 C 1.50708 * 109.47004 * 180.02562 * 15 14 11 17 17 O 1.21289 * 119.99478 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00025 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99628 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00438 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99907 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00005 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00020 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47373 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46925 * 120.00139 * 23 21 19 26 26 H 1.48495 * 109.47253 * 239.99680 * 23 21 19 27 27 C 1.36095 * 107.10485 * 359.97438 * 5 4 3 28 28 O 1.34044 * 125.37986 * 269.97155 * 3 2 1 29 29 H 1.09000 * 109.47222 * 59.99865 * 1 2 3 30 30 H 1.09000 * 109.46965 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47324 * 299.99810 * 1 2 3 32 32 H 1.08995 * 109.47041 * 240.00070 * 2 1 3 33 33 H 1.08997 * 109.47467 * 119.99681 * 2 1 3 34 34 H 0.96995 * 119.99781 * 0.02562 * 8 6 5 35 35 H 1.09008 * 109.47006 * 299.99522 * 9 8 6 36 36 H 1.08997 * 109.47484 * 59.99609 * 9 8 6 37 37 H 1.08994 * 109.47054 * 299.99408 * 10 9 8 38 38 H 1.08999 * 109.47136 * 60.00326 * 10 9 8 39 39 H 1.08999 * 109.46729 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.47115 * 299.99567 * 13 11 10 41 41 H 1.08996 * 109.47312 * 60.00151 * 13 11 10 42 42 H 1.00890 * 111.00062 * 328.95047 * 14 11 10 43 43 H 1.09002 * 109.47081 * 299.99844 * 15 14 11 44 44 H 1.08993 * 109.47417 * 60.00234 * 15 14 11 45 45 H 0.97000 * 120.00166 * 0.02562 * 18 16 15 46 46 H 0.96995 * 120.00126 * 180.02562 * 22 21 19 47 47 H 1.07998 * 126.52611 * 179.73939 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2831 2.1301 1.0595 5 6 2.7175 3.3574 0.6639 6 6 3.1115 4.4726 1.5439 7 8 3.4837 5.5253 1.0619 8 7 3.0594 4.3254 2.8826 9 6 3.4504 5.4339 3.7571 10 6 3.2993 5.0079 5.2189 11 6 3.7082 6.1654 6.1322 12 1 4.7164 6.4912 5.8764 13 6 3.6768 5.7006 7.5895 14 7 2.7723 7.2835 5.9544 15 6 3.4048 8.5609 6.3095 16 6 2.4164 9.6820 6.1156 17 8 1.2956 9.4405 5.7200 18 7 2.7780 10.9527 6.3817 19 6 1.8790 11.9725 6.2047 20 1 0.8810 11.7576 5.8525 21 6 2.2519 13.2828 6.4786 22 7 3.4665 13.5444 6.9067 23 14 1.0272 14.6723 6.2368 24 1 -0.2613 14.1175 5.7501 25 1 0.8086 15.3699 7.5295 26 1 1.5607 15.6344 5.2394 27 6 2.7199 3.3617 -0.6970 28 8 2.2915 2.1524 -1.0929 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.7631 3.4856 3.2670 35 1 4.4888 5.7019 3.5619 36 1 2.8102 6.2941 3.5617 37 1 2.2609 4.7403 5.4138 38 1 3.9393 4.1476 5.4146 39 1 3.9677 6.5253 8.2402 40 1 2.6686 5.3747 7.8453 41 1 4.3712 4.8709 7.7214 42 1 2.4126 7.3077 5.0121 43 1 3.7212 8.5323 7.3522 44 1 4.2725 8.7266 5.6710 45 1 3.6746 11.1459 6.6977 46 1 3.7267 14.4590 7.0982 47 1 3.0067 4.1832 -1.3367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700322531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:18 Heat of formation + Delta-G solvation = -63.220798 kcal Electronic energy + Delta-G solvation = -27992.240145 eV Core-core repulsion = 23790.307562 eV Total energy + Delta-G solvation = -4201.932583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.84962 -39.76550 -38.44330 -37.15250 -35.48278 -34.81455 -34.40216 -33.84904 -31.55789 -31.05162 -30.02855 -28.99057 -26.40427 -25.13900 -24.75314 -23.90263 -22.79896 -21.56030 -20.89990 -20.21673 -19.22725 -18.45955 -17.84636 -17.26532 -16.82571 -16.49755 -16.02729 -15.79260 -15.38604 -15.12440 -15.04188 -14.91162 -14.45418 -14.17560 -13.89585 -13.77770 -13.60085 -13.52916 -13.24520 -13.06428 -12.47343 -12.34921 -12.14053 -11.83602 -11.80030 -11.72261 -11.63597 -11.51918 -11.28725 -11.27523 -11.20601 -11.05390 -10.77607 -10.38037 -10.30920 -10.18197 -9.49271 -9.47791 -9.22229 -8.39774 -8.02861 -7.91329 -6.37608 -3.78133 0.73386 1.59793 2.13455 2.81518 3.03728 3.19602 3.29798 3.37488 3.40454 3.95838 4.12980 4.31056 4.34670 4.36128 4.54762 4.57742 4.64193 4.77978 4.89419 4.97173 5.13960 5.16146 5.16480 5.22410 5.29286 5.37600 5.41463 5.43179 5.52666 5.58514 5.69121 5.73909 5.83858 5.87322 5.92518 6.04081 6.09726 6.18155 6.29278 6.39557 6.98103 7.27890 7.31622 7.59607 7.70675 7.92138 8.11155 8.65955 9.22412 9.59107 10.10733 10.80303 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.001814 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.144755 B =15432.186403 C =16413.794688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C 0.198 3.802 4 N -0.460 5.460 5 C -0.071 4.071 6 C 0.599 3.401 7 O -0.532 6.532 8 N -0.709 5.709 9 C 0.112 3.888 10 C -0.132 4.132 11 C 0.086 3.914 12 H 0.045 0.955 13 C -0.139 4.139 14 N -0.666 5.666 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.014 3.986 28 O -0.196 6.196 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.409 0.591 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.349 0.651 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.270 0.730 47 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -28.979 -11.241 31.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.065 4.065 3 C -0.011 4.011 4 N -0.190 5.190 5 C -0.191 4.191 6 C 0.384 3.616 7 O -0.408 6.408 8 N -0.360 5.360 9 C -0.011 4.011 10 C -0.170 4.170 11 C -0.024 4.024 12 H 0.063 0.937 13 C -0.197 4.197 14 N -0.301 5.301 15 C -0.083 4.083 16 C 0.227 3.773 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.060 4.060 28 O -0.081 6.081 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.245 0.755 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.170 0.830 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.370 -28.477 -10.567 30.406 hybrid contribution 0.658 1.075 -1.103 1.675 sum 2.027 -27.402 -11.670 29.853 Atomic orbital electron populations 1.21807 0.92776 1.03242 1.03220 1.20137 0.97091 0.83789 1.05480 1.26384 0.99405 0.96998 0.78295 1.70741 1.15755 1.02554 1.29987 1.21791 1.09891 0.94320 0.93115 1.16740 0.77747 0.85105 0.81966 1.90875 1.47525 1.27082 1.75357 1.45736 1.67148 1.17822 1.05298 1.21563 1.01098 0.89506 0.88977 1.21983 1.03680 0.98917 0.92466 1.21455 0.94561 0.90739 0.95666 0.93689 1.21782 1.02114 1.00583 0.95204 1.60204 1.35670 1.01248 1.32992 1.21728 0.95431 0.89529 1.01607 1.19830 0.89096 0.83655 0.84729 1.90522 1.21760 1.83406 1.50997 1.41867 1.14928 1.04861 1.58490 1.19758 0.96205 0.85164 1.41590 0.87884 1.25259 0.96954 0.98628 0.97185 1.69623 1.17967 1.21144 1.45641 0.85801 0.80330 0.80385 0.77838 1.19236 1.20777 1.20797 1.25341 0.98351 0.86543 0.95740 1.84398 1.63259 1.22581 1.37911 0.92042 0.90662 0.91530 0.88637 0.87340 0.75549 0.91136 0.90611 0.89917 0.90526 0.92386 0.91832 0.92867 0.82952 0.89567 0.93821 0.77471 0.91977 0.75177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.89 37.16 0.37 -0.19 16 2 C -0.03 -0.11 6.56 -27.88 -0.18 -0.29 16 3 C 0.20 1.58 7.56 -13.08 -0.10 1.48 16 4 N -0.46 -4.63 11.06 -7.65 -0.08 -4.72 16 5 C -0.07 -0.79 6.99 -83.02 -0.58 -1.37 16 6 C 0.60 7.85 7.81 -12.52 -0.10 7.75 16 7 O -0.53 -8.64 16.89 5.26 0.09 -8.55 16 8 N -0.71 -7.93 5.55 -61.38 -0.34 -8.27 16 9 C 0.11 1.30 5.50 -4.04 -0.02 1.28 16 10 C -0.13 -1.32 4.92 -26.73 -0.13 -1.45 16 11 C 0.09 1.05 2.65 -67.71 -0.18 0.87 16 12 H 0.05 0.53 7.80 -51.93 -0.40 0.12 16 13 C -0.14 -1.55 9.42 37.16 0.35 -1.20 16 14 N -0.67 -10.94 5.93 -107.99 -0.64 -11.58 16 15 C 0.05 0.90 5.97 -4.97 -0.03 0.88 16 16 C 0.44 10.76 7.82 -10.98 -0.09 10.67 16 17 O -0.58 -16.32 15.78 5.55 0.09 -16.23 16 18 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 19 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 20 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -25.02 13.05 55.50 0.72 -24.30 16 23 Si 0.93 21.53 29.55 -169.99 -5.02 16.51 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 C 0.01 0.13 11.95 29.96 0.36 0.49 16 28 O -0.20 -1.65 10.73 6.52 0.07 -1.58 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 32 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.41 3.83 8.20 -40.82 -0.33 3.50 16 35 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.08 1.06 6.43 -51.93 -0.33 0.72 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.69 7.45 -51.93 -0.39 0.31 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.35 6.06 6.17 -39.30 -0.24 5.82 16 43 H 0.09 1.45 7.44 -51.93 -0.39 1.06 16 44 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 45 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 46 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.23 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 401.75 15.07 6.05 6.05 Total: -1.00 -35.53 401.75 -6.69 -42.22 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -6.99 Total: 14.47 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -0.57 Total: 10.74 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -0.40 Total: -63.63 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: 0.25 Total: -26.36 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.53 -6.69 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700322531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.000 kcal (2) G-P(sol) polarization free energy of solvation -35.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds