Wall clock time and date at job start Tue Mar 31 2020 20:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46866 * 2 1 4 4 N 1.29941 * 125.37745 * 90.00464 * 3 2 1 5 5 C 1.36062 * 108.47645 * 179.97438 * 4 3 2 6 6 C 1.47416 * 126.45058 * 179.97438 * 5 4 3 7 7 O 1.21615 * 120.00299 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99866 * 0.04052 * 6 5 4 9 9 C 1.46502 * 120.00013 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46840 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46667 * 179.97438 * 10 9 8 12 12 H 1.08999 * 109.47000 * 304.99740 * 11 10 9 13 13 C 1.53003 * 109.46666 * 185.00103 * 11 10 9 14 14 N 1.46897 * 109.46912 * 65.00089 * 11 10 9 15 15 C 1.46902 * 110.99391 * 204.99772 * 14 11 10 16 16 C 1.50708 * 109.47004 * 180.02562 * 15 14 11 17 17 O 1.21289 * 119.99478 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00025 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99628 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00438 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99907 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00005 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00020 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47373 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46925 * 120.00139 * 23 21 19 26 26 H 1.48495 * 109.47253 * 239.99680 * 23 21 19 27 27 C 1.36095 * 107.10485 * 359.97438 * 5 4 3 28 28 O 1.34044 * 125.37986 * 269.97155 * 3 2 1 29 29 H 1.09000 * 109.47222 * 59.99865 * 1 2 3 30 30 H 1.09000 * 109.46965 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47324 * 299.99810 * 1 2 3 32 32 H 1.08995 * 109.47041 * 240.00070 * 2 1 3 33 33 H 1.08997 * 109.47467 * 119.99681 * 2 1 3 34 34 H 0.96995 * 119.99781 * 0.02562 * 8 6 5 35 35 H 1.09008 * 109.47006 * 299.99522 * 9 8 6 36 36 H 1.08997 * 109.47484 * 59.99609 * 9 8 6 37 37 H 1.08994 * 109.47054 * 299.99408 * 10 9 8 38 38 H 1.08999 * 109.47136 * 60.00326 * 10 9 8 39 39 H 1.08999 * 109.46729 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.47115 * 299.99567 * 13 11 10 41 41 H 1.08996 * 109.47312 * 60.00151 * 13 11 10 42 42 H 1.00890 * 111.00062 * 328.95047 * 14 11 10 43 43 H 1.09002 * 109.47081 * 299.99844 * 15 14 11 44 44 H 1.08993 * 109.47417 * 60.00234 * 15 14 11 45 45 H 0.97000 * 120.00166 * 0.02562 * 18 16 15 46 46 H 0.96995 * 120.00126 * 180.02562 * 22 21 19 47 47 H 1.07998 * 126.52611 * 179.73939 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2831 2.1301 1.0595 5 6 2.7175 3.3574 0.6639 6 6 3.1115 4.4726 1.5439 7 8 3.4837 5.5253 1.0619 8 7 3.0594 4.3254 2.8826 9 6 3.4504 5.4339 3.7571 10 6 3.2993 5.0079 5.2189 11 6 3.7082 6.1654 6.1322 12 1 4.7164 6.4912 5.8764 13 6 3.6768 5.7006 7.5895 14 7 2.7723 7.2835 5.9544 15 6 3.4048 8.5609 6.3095 16 6 2.4164 9.6820 6.1156 17 8 1.2956 9.4405 5.7200 18 7 2.7780 10.9527 6.3817 19 6 1.8790 11.9725 6.2047 20 1 0.8810 11.7576 5.8525 21 6 2.2519 13.2828 6.4786 22 7 3.4665 13.5444 6.9067 23 14 1.0272 14.6723 6.2368 24 1 -0.2613 14.1175 5.7501 25 1 0.8086 15.3699 7.5295 26 1 1.5607 15.6344 5.2394 27 6 2.7199 3.3617 -0.6970 28 8 2.2915 2.1524 -1.0929 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.7631 3.4856 3.2670 35 1 4.4888 5.7019 3.5619 36 1 2.8102 6.2941 3.5617 37 1 2.2609 4.7403 5.4138 38 1 3.9393 4.1476 5.4146 39 1 3.9677 6.5253 8.2402 40 1 2.6686 5.3747 7.8453 41 1 4.3712 4.8709 7.7214 42 1 2.4126 7.3077 5.0121 43 1 3.7212 8.5323 7.3522 44 1 4.2725 8.7266 5.6710 45 1 3.6746 11.1459 6.6977 46 1 3.7267 14.4590 7.0982 47 1 3.0067 4.1832 -1.3367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700322531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:17 Heat of formation + Delta-G solvation = -93.515083 kcal Electronic energy + Delta-G solvation = -27993.553804 eV Core-core repulsion = 23790.307562 eV Total energy + Delta-G solvation = -4203.246242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.53221 -40.78547 -40.21561 -38.43270 -36.22372 -36.04611 -35.70655 -34.86854 -33.33840 -32.59743 -30.73552 -29.86393 -28.08890 -26.15896 -25.55286 -25.19738 -23.68800 -22.23983 -21.78742 -21.22321 -21.04556 -19.93827 -19.27324 -17.96715 -17.89888 -17.50684 -17.32850 -16.94785 -16.73174 -16.43984 -16.08531 -15.82064 -15.60331 -15.51997 -15.28273 -14.94311 -14.62157 -14.45907 -14.30570 -14.07263 -13.59272 -13.52948 -13.35898 -13.18331 -12.88530 -12.65065 -12.61448 -12.45418 -12.40957 -12.28166 -12.23255 -12.12012 -12.05500 -11.98130 -11.81198 -11.52944 -11.39326 -10.39494 -10.34189 -10.04258 -10.03013 -9.33363 -8.48189 -5.97026 -0.01576 0.87180 1.35255 1.40199 1.50838 1.54836 1.94910 2.03327 2.11646 2.28107 2.77036 2.91983 3.18783 3.49461 3.60961 3.71027 3.75672 3.94910 4.07228 4.20099 4.25096 4.29451 4.33575 4.42735 4.47294 4.49810 4.53430 4.59691 4.60323 4.66665 4.93660 4.97957 4.98795 5.01400 5.03607 5.04472 5.17048 5.24564 5.34737 5.39614 5.47016 5.90487 6.12455 6.19434 6.39183 6.50237 6.58612 6.97341 7.11064 7.54343 8.09930 8.69493 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.001814 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.144755 B =15432.186403 C =16413.794688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.026 4.026 3 C 0.204 3.796 4 N -0.480 5.480 5 C -0.100 4.100 6 C 0.595 3.405 7 O -0.573 6.573 8 N -0.698 5.698 9 C 0.115 3.885 10 C -0.118 4.118 11 C 0.084 3.916 12 H 0.056 0.944 13 C -0.136 4.136 14 N -0.681 5.681 15 C 0.064 3.936 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.994 3.006 24 H -0.275 1.275 25 H -0.269 1.269 26 H -0.270 1.270 27 C 0.025 3.975 28 O -0.194 6.194 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.419 0.581 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.340 0.660 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 -30.821 -11.259 32.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.064 4.064 3 C -0.006 4.006 4 N -0.210 5.210 5 C -0.219 4.219 6 C 0.382 3.618 7 O -0.453 6.453 8 N -0.349 5.349 9 C -0.008 4.008 10 C -0.156 4.156 11 C -0.025 4.025 12 H 0.074 0.926 13 C -0.194 4.194 14 N -0.315 5.315 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.095 0.905 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.199 1.199 25 H -0.194 1.194 26 H -0.196 1.196 27 C -0.050 4.050 28 O -0.080 6.080 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.256 0.744 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.161 0.839 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.033 -30.358 -10.537 32.199 hybrid contribution 0.451 1.547 -1.120 1.962 sum 2.484 -28.811 -11.657 31.179 Atomic orbital electron populations 1.21799 0.92503 1.04356 1.02137 1.20432 0.97118 0.81518 1.07307 1.27280 0.97751 0.97946 0.77627 1.70710 1.16892 1.02379 1.30980 1.21646 1.12031 0.94568 0.93672 1.17059 0.77084 0.85125 0.82557 1.90840 1.49632 1.28761 1.76088 1.45667 1.66370 1.18030 1.04855 1.21478 1.00242 0.88898 0.90215 1.21892 1.04254 0.98971 0.90479 1.21619 0.94107 0.89817 0.96980 0.92648 1.21777 1.02460 1.01247 0.93880 1.60252 1.37238 1.01523 1.32533 1.21588 0.93933 0.88088 1.03186 1.20928 0.89591 0.84383 0.82725 1.90487 1.24037 1.84149 1.52427 1.41934 1.14791 1.05265 1.59022 1.19704 0.96057 0.86800 1.43867 0.90456 1.26056 0.98802 1.00284 0.96168 1.69677 1.18983 1.22146 1.45235 0.84859 0.77709 0.77298 0.78384 1.19927 1.19388 1.19553 1.25739 0.96822 0.87037 0.95378 1.84437 1.63150 1.22365 1.38091 0.92589 0.88450 0.93136 0.86210 0.86055 0.74392 0.91337 0.93406 0.90130 0.87405 0.93300 0.92639 0.89893 0.83927 0.87639 0.91880 0.76951 0.91263 0.73264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 71.98 0.71 -0.13 16 2 C -0.03 -0.15 6.56 29.85 0.20 0.05 16 3 C 0.20 2.98 7.56 88.39 0.67 3.65 16 4 N -0.48 -9.36 11.06 -293.04 -3.24 -12.60 16 5 C -0.10 -2.24 6.99 40.41 0.28 -1.96 16 6 C 0.60 16.00 7.81 86.66 0.68 16.67 16 7 O -0.57 -19.40 16.89 -4.08 -0.07 -19.47 16 8 N -0.70 -15.62 5.55 -466.35 -2.59 -18.21 16 9 C 0.12 2.68 5.50 86.38 0.48 3.16 16 10 C -0.12 -2.16 4.92 30.60 0.15 -2.01 16 11 C 0.08 1.90 2.65 44.92 0.12 2.02 16 12 H 0.06 1.17 7.80 -2.39 -0.02 1.15 16 13 C -0.14 -2.71 9.42 71.98 0.68 -2.03 16 14 N -0.68 -22.20 5.93 -495.56 -2.94 -25.14 16 15 C 0.06 2.32 5.97 85.56 0.51 2.83 16 16 C 0.44 21.76 7.82 87.66 0.69 22.45 16 17 O -0.62 -36.27 15.78 -3.06 -0.05 -36.32 16 18 N -0.57 -30.57 5.29 -306.99 -1.62 -32.19 16 19 C -0.33 -19.68 9.68 84.04 0.81 -18.87 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.84 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.92 -50.73 13.05 21.66 0.28 -50.45 16 23 Si 0.99 44.18 29.55 68.60 2.03 46.21 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 C 0.02 0.43 11.95 67.32 0.80 1.24 16 28 O -0.19 -3.04 10.73 0.42 0.00 -3.04 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.42 7.59 8.20 -92.71 -0.76 6.83 16 35 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.05 1.40 6.43 -2.39 -0.02 1.38 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.05 1.06 7.45 -2.39 -0.02 1.05 16 40 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.34 12.12 6.17 -89.70 -0.55 11.57 16 43 H 0.11 3.41 7.44 -2.39 -0.02 3.39 16 44 H 0.06 2.04 8.05 -2.39 -0.02 2.02 16 45 H 0.40 20.02 7.90 -92.71 -0.73 19.28 16 46 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.25 3.09 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -79.21 401.75 -1.98 -81.19 By element: Atomic # 1 Polarization: 44.24 SS G_CDS: -1.02 Total: 43.21 kcal Atomic # 6 Polarization: 19.57 SS G_CDS: 7.24 Total: 26.80 kcal Atomic # 7 Polarization: -128.47 SS G_CDS: -10.11 Total: -138.58 kcal Atomic # 8 Polarization: -58.72 SS G_CDS: -0.11 Total: -58.83 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -79.21 -1.98 -81.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700322531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.327 kcal (2) G-P(sol) polarization free energy of solvation -79.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds