Wall clock time and date at job start Tue Mar 31 2020 20:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47308 * 2 1 4 4 N 1.29934 * 125.37841 * 90.03140 * 3 2 1 5 5 C 1.36066 * 108.48106 * 180.02562 * 4 3 2 6 6 C 1.47419 * 126.44832 * 180.26256 * 5 4 3 7 7 O 1.21611 * 119.99556 * 179.68538 * 6 5 4 8 8 N 1.34775 * 120.00268 * 359.68035 * 6 5 4 9 9 C 1.46499 * 119.99867 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46927 * 175.19268 * 9 8 6 11 11 H 1.09007 * 109.46980 * 295.32044 * 10 9 8 12 12 C 1.52995 * 109.47305 * 175.31620 * 10 9 8 13 13 N 1.46902 * 109.47241 * 55.31534 * 10 9 8 14 14 C 1.46895 * 111.00161 * 192.49521 * 13 10 9 15 15 C 1.46909 * 110.99804 * 68.54222 * 13 10 9 16 16 C 1.50692 * 109.47015 * 190.00128 * 15 13 10 17 17 O 1.21291 * 120.00477 * 359.97438 * 16 15 13 18 18 N 1.34784 * 120.00025 * 180.02562 * 16 15 13 19 19 C 1.37097 * 119.99927 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00203 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99759 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00070 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99977 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46936 * 89.99906 * 23 21 19 25 25 H 1.48505 * 109.46732 * 209.99805 * 23 21 19 26 26 H 1.48498 * 109.47018 * 329.99770 * 23 21 19 27 27 C 1.36092 * 107.09754 * 359.97438 * 5 4 3 28 28 O 1.34051 * 125.38073 * 270.02420 * 3 2 1 29 29 H 1.09005 * 109.46737 * 299.99734 * 1 2 3 30 30 H 1.08996 * 109.47089 * 59.99220 * 1 2 3 31 31 H 1.09000 * 109.47567 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46737 * 240.00266 * 2 1 3 33 33 H 1.08996 * 109.47089 * 120.00780 * 2 1 3 34 34 H 0.97002 * 119.99611 * 0.02562 * 8 6 5 35 35 H 1.09000 * 109.47498 * 295.19080 * 9 8 6 36 36 H 1.08999 * 109.47169 * 55.19396 * 9 8 6 37 37 H 1.08999 * 109.47654 * 300.00356 * 12 10 9 38 38 H 1.09007 * 109.47279 * 59.99962 * 12 10 9 39 39 H 1.08998 * 109.47638 * 179.97438 * 12 10 9 40 40 H 1.08995 * 109.47344 * 53.76109 * 14 13 10 41 41 H 1.09007 * 109.47218 * 173.76421 * 14 13 10 42 42 H 1.09003 * 109.47089 * 293.76517 * 14 13 10 43 43 H 1.09000 * 109.46619 * 309.99994 * 15 13 10 44 44 H 1.08998 * 109.46978 * 70.00123 * 15 13 10 45 45 H 0.97001 * 119.99803 * 359.97438 * 18 16 15 46 46 H 0.97001 * 120.00159 * 180.02562 * 22 21 19 47 47 H 1.07998 * 126.52106 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2837 2.1298 1.0594 5 6 2.7169 3.3575 0.6639 6 6 3.1166 4.4707 1.5440 7 8 3.4929 5.5218 1.0620 8 7 3.0648 4.3234 2.8827 9 6 3.4614 5.4298 3.7571 10 6 3.1972 5.0476 5.2149 11 1 2.1255 4.9216 5.3690 12 6 3.7183 6.1536 6.1346 13 7 3.8876 3.7882 5.5238 14 6 3.4268 3.2356 6.8044 15 6 5.3450 3.9731 5.5241 16 6 6.0218 2.6288 5.5988 17 8 5.3559 1.6163 5.6475 18 7 7.3674 2.5516 5.6125 19 6 7.9832 1.3286 5.6799 20 1 7.3901 0.4270 5.7224 21 6 9.3703 1.2491 5.6946 22 7 10.0919 2.3461 5.6434 23 14 10.2094 -0.4173 5.7872 24 1 10.4423 -0.9312 4.4136 25 1 11.5097 -0.2783 6.4909 26 1 9.3431 -1.3670 6.5307 27 6 2.7180 3.3622 -0.6970 28 8 2.2906 2.1527 -1.0929 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.7649 3.4848 3.2670 35 1 4.5231 5.6368 3.6225 36 1 2.8831 6.3183 3.5040 37 1 4.7900 6.2796 5.9806 38 1 3.2060 7.0881 5.9055 39 1 3.5297 5.8816 7.1731 40 1 2.3405 3.1467 6.7920 41 1 3.8702 2.2514 6.9561 42 1 3.7278 3.8986 7.6156 43 1 5.6468 4.4816 4.6084 44 1 5.6348 4.5742 6.3859 45 1 7.9001 3.3614 5.5739 46 1 11.0603 2.2906 5.6533 47 1 3.0078 4.1827 -1.3367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700458057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:17 Heat of formation + Delta-G solvation = -45.835890 kcal Electronic energy + Delta-G solvation = -29665.322730 eV Core-core repulsion = 25464.144013 eV Total energy + Delta-G solvation = -4201.178717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.52557 -39.68829 -38.74524 -37.18496 -35.15185 -34.29600 -34.09822 -33.73787 -31.21708 -30.93950 -29.64509 -28.03493 -26.82008 -25.00575 -24.62339 -24.10775 -23.27870 -21.31094 -20.48173 -20.19394 -18.88811 -18.10424 -17.74451 -16.95845 -16.62832 -16.50056 -16.05651 -15.33382 -15.07554 -14.78400 -14.74155 -14.59563 -14.43462 -14.03009 -13.89607 -13.62570 -13.48189 -13.36629 -12.95949 -12.74668 -12.70730 -12.24925 -12.09209 -12.03058 -11.79399 -11.50563 -11.45605 -11.31293 -11.21514 -11.12593 -10.87613 -10.85408 -10.74458 -10.37918 -10.19321 -10.16319 -9.44802 -9.17961 -8.86802 -8.43680 -7.95202 -7.82495 -6.38903 -3.79513 1.03205 1.94775 2.44062 3.15395 3.19256 3.27540 3.33141 3.36493 3.74073 3.93785 4.01228 4.26003 4.60264 4.70436 4.71705 4.83523 4.87663 5.00389 5.08796 5.12778 5.23766 5.29282 5.42761 5.46417 5.49335 5.49945 5.50888 5.59840 5.67827 5.77646 5.80256 5.82120 5.89952 5.97160 5.99011 6.04408 6.16421 6.31222 6.50629 6.58317 7.25673 7.33708 7.37568 7.57670 7.73183 8.09251 8.26526 8.65053 9.21146 9.57869 10.09903 10.78989 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008256 B = 0.003318 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3390.590478 B = 8437.866212 C =10196.194127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C 0.198 3.802 4 N -0.451 5.451 5 C -0.066 4.066 6 C 0.599 3.401 7 O -0.549 6.549 8 N -0.692 5.692 9 C 0.128 3.872 10 C 0.064 3.936 11 H 0.089 0.911 12 C -0.185 4.185 13 N -0.511 5.511 14 C 0.022 3.978 15 C 0.042 3.958 16 C 0.445 3.555 17 O -0.576 6.576 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.006 3.994 28 O -0.198 6.198 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.421 0.579 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.017 0.983 43 H 0.086 0.914 44 H 0.051 0.949 45 H 0.391 0.609 46 H 0.271 0.729 47 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.720 3.630 -8.307 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.066 4.066 3 C -0.012 4.012 4 N -0.181 5.181 5 C -0.186 4.186 6 C 0.384 3.616 7 O -0.428 6.428 8 N -0.343 5.343 9 C 0.004 3.996 10 C -0.045 4.045 11 H 0.107 0.893 12 C -0.244 4.244 13 N -0.235 5.235 14 C -0.125 4.125 15 C -0.090 4.090 16 C 0.231 3.769 17 O -0.460 6.460 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.068 4.068 28 O -0.084 6.084 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.259 0.741 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.036 0.964 43 H 0.105 0.895 44 H 0.069 0.931 45 H 0.224 0.776 46 H 0.081 0.919 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -17.881 3.139 -8.323 19.971 hybrid contribution 1.222 0.352 0.157 1.281 sum -16.659 3.491 -8.166 18.879 Atomic orbital electron populations 1.21784 0.93020 1.03069 1.02905 1.20138 0.96841 0.83955 1.05708 1.26379 0.99553 0.97007 0.78231 1.70827 1.15124 1.02361 1.29744 1.21803 1.09430 0.94386 0.92980 1.16737 0.77719 0.84987 0.82111 1.90800 1.48770 1.27525 1.75666 1.45636 1.65538 1.18472 1.04683 1.21469 1.00883 0.89119 0.88153 1.22046 0.99510 0.89464 0.93482 0.89292 1.22403 1.02494 0.99177 1.00323 1.61781 1.04178 1.23936 1.33573 1.22544 1.00011 1.01965 0.88009 1.21937 0.88188 0.97241 1.01584 1.19730 0.82931 0.89998 0.84261 1.90476 1.63856 1.36697 1.55015 1.41863 1.04488 1.09418 1.64443 1.19682 0.89606 0.86116 1.47283 0.87957 1.25249 0.96405 0.98873 0.97451 1.69614 1.06627 1.27429 1.50725 0.85875 0.78415 0.81701 0.78395 1.20444 1.20966 1.19434 1.25234 0.99216 0.86663 0.95716 1.84375 1.63502 1.22506 1.38047 0.91616 0.92275 0.90792 0.88719 0.87062 0.74117 0.91278 0.90802 0.91603 0.91875 0.91833 0.92324 0.88411 0.96418 0.89542 0.93065 0.77580 0.91923 0.75432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.15 0.37 -0.60 16 2 C -0.03 -0.23 6.56 -27.89 -0.18 -0.41 16 3 C 0.20 2.35 7.56 -13.08 -0.10 2.25 16 4 N -0.45 -6.57 11.06 -7.66 -0.08 -6.65 16 5 C -0.07 -0.96 6.99 -83.02 -0.58 -1.54 16 6 C 0.60 9.52 7.81 -12.52 -0.10 9.42 16 7 O -0.55 -9.65 16.89 5.27 0.09 -9.56 16 8 N -0.69 -10.29 5.41 -61.39 -0.33 -10.62 16 9 C 0.13 1.68 4.94 -4.04 -0.02 1.66 16 10 C 0.06 0.78 2.47 -67.71 -0.17 0.62 16 11 H 0.09 0.98 7.93 -51.92 -0.41 0.57 16 12 C -0.18 -1.94 8.41 37.15 0.31 -1.63 16 13 N -0.51 -8.04 3.82 -236.33 -0.90 -8.95 16 14 C 0.02 0.34 8.90 60.06 0.53 0.88 16 15 C 0.04 0.74 4.31 -4.97 -0.02 0.72 16 16 C 0.45 10.51 7.52 -10.99 -0.08 10.43 16 17 O -0.58 -15.30 13.88 5.55 0.08 -15.23 16 18 N -0.57 -14.49 5.29 -10.97 -0.06 -14.54 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.89 13.05 55.50 0.72 -24.16 16 23 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.01 0.07 11.94 29.96 0.36 0.42 16 28 O -0.20 -2.29 10.73 6.52 0.07 -2.22 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.42 6.55 7.80 -40.82 -0.32 6.23 16 35 H 0.07 0.99 6.65 -51.93 -0.35 0.64 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.74 6.54 -51.93 -0.34 0.40 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.67 6.92 -51.93 -0.36 0.31 16 40 H 0.06 0.77 7.98 -51.93 -0.41 0.35 16 41 H 0.10 1.87 5.92 -51.93 -0.31 1.56 16 42 H 0.02 0.25 6.96 -51.93 -0.36 -0.11 16 43 H 0.09 1.49 6.30 -51.93 -0.33 1.17 16 44 H 0.05 0.84 6.81 -51.93 -0.35 0.48 16 45 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 46 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.23 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -33.97 391.74 -6.21 -40.18 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -6.75 Total: 15.39 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 0.08 Total: 14.20 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -0.65 Total: -64.92 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: 0.24 Total: -27.00 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.97 -6.21 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700458057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.652 kcal (2) G-P(sol) polarization free energy of solvation -33.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds