Wall clock time and date at job start Tue Mar 31 2020 20:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47308 * 2 1 4 4 N 1.29934 * 125.37841 * 90.03140 * 3 2 1 5 5 C 1.36066 * 108.48106 * 180.02562 * 4 3 2 6 6 C 1.47419 * 126.44832 * 180.26256 * 5 4 3 7 7 O 1.21611 * 119.99556 * 179.68538 * 6 5 4 8 8 N 1.34775 * 120.00268 * 359.68035 * 6 5 4 9 9 C 1.46499 * 119.99867 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46927 * 175.19268 * 9 8 6 11 11 H 1.09007 * 109.46980 * 295.32044 * 10 9 8 12 12 C 1.52995 * 109.47305 * 175.31620 * 10 9 8 13 13 N 1.46902 * 109.47241 * 55.31534 * 10 9 8 14 14 C 1.46895 * 111.00161 * 192.49521 * 13 10 9 15 15 C 1.46909 * 110.99804 * 68.54222 * 13 10 9 16 16 C 1.50692 * 109.47015 * 190.00128 * 15 13 10 17 17 O 1.21291 * 120.00477 * 359.97438 * 16 15 13 18 18 N 1.34784 * 120.00025 * 180.02562 * 16 15 13 19 19 C 1.37097 * 119.99927 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00203 * 359.97438 * 19 18 16 21 21 C 1.38946 * 119.99759 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00070 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99977 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46936 * 89.99906 * 23 21 19 25 25 H 1.48505 * 109.46732 * 209.99805 * 23 21 19 26 26 H 1.48498 * 109.47018 * 329.99770 * 23 21 19 27 27 C 1.36092 * 107.09754 * 359.97438 * 5 4 3 28 28 O 1.34051 * 125.38073 * 270.02420 * 3 2 1 29 29 H 1.09005 * 109.46737 * 299.99734 * 1 2 3 30 30 H 1.08996 * 109.47089 * 59.99220 * 1 2 3 31 31 H 1.09000 * 109.47567 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46737 * 240.00266 * 2 1 3 33 33 H 1.08996 * 109.47089 * 120.00780 * 2 1 3 34 34 H 0.97002 * 119.99611 * 0.02562 * 8 6 5 35 35 H 1.09000 * 109.47498 * 295.19080 * 9 8 6 36 36 H 1.08999 * 109.47169 * 55.19396 * 9 8 6 37 37 H 1.08999 * 109.47654 * 300.00356 * 12 10 9 38 38 H 1.09007 * 109.47279 * 59.99962 * 12 10 9 39 39 H 1.08998 * 109.47638 * 179.97438 * 12 10 9 40 40 H 1.08995 * 109.47344 * 53.76109 * 14 13 10 41 41 H 1.09007 * 109.47218 * 173.76421 * 14 13 10 42 42 H 1.09003 * 109.47089 * 293.76517 * 14 13 10 43 43 H 1.09000 * 109.46619 * 309.99994 * 15 13 10 44 44 H 1.08998 * 109.46978 * 70.00123 * 15 13 10 45 45 H 0.97001 * 119.99803 * 359.97438 * 18 16 15 46 46 H 0.97001 * 120.00159 * 180.02562 * 22 21 19 47 47 H 1.07998 * 126.52106 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2837 2.1298 1.0594 5 6 2.7169 3.3575 0.6639 6 6 3.1166 4.4707 1.5440 7 8 3.4929 5.5218 1.0620 8 7 3.0648 4.3234 2.8827 9 6 3.4614 5.4298 3.7571 10 6 3.1972 5.0476 5.2149 11 1 2.1255 4.9216 5.3690 12 6 3.7183 6.1536 6.1346 13 7 3.8876 3.7882 5.5238 14 6 3.4268 3.2356 6.8044 15 6 5.3450 3.9731 5.5241 16 6 6.0218 2.6288 5.5988 17 8 5.3559 1.6163 5.6475 18 7 7.3674 2.5516 5.6125 19 6 7.9832 1.3286 5.6799 20 1 7.3901 0.4270 5.7224 21 6 9.3703 1.2491 5.6946 22 7 10.0919 2.3461 5.6434 23 14 10.2094 -0.4173 5.7872 24 1 10.4423 -0.9312 4.4136 25 1 11.5097 -0.2783 6.4909 26 1 9.3431 -1.3670 6.5307 27 6 2.7180 3.3622 -0.6970 28 8 2.2906 2.1527 -1.0929 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.7649 3.4848 3.2670 35 1 4.5231 5.6368 3.6225 36 1 2.8831 6.3183 3.5040 37 1 4.7900 6.2796 5.9806 38 1 3.2060 7.0881 5.9055 39 1 3.5297 5.8816 7.1731 40 1 2.3405 3.1467 6.7920 41 1 3.8702 2.2514 6.9561 42 1 3.7278 3.8986 7.6156 43 1 5.6468 4.4816 4.6084 44 1 5.6348 4.5742 6.3859 45 1 7.9001 3.3614 5.5739 46 1 11.0603 2.2906 5.6533 47 1 3.0078 4.1827 -1.3367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700458057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:16 Heat of formation + Delta-G solvation = -74.196810 kcal Electronic energy + Delta-G solvation = -29666.552552 eV Core-core repulsion = 25464.144013 eV Total energy + Delta-G solvation = -4202.408539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.47796 -40.95079 -40.26978 -38.71176 -36.11344 -35.98095 -35.28840 -34.83416 -33.27045 -32.06427 -30.54438 -29.56253 -27.81619 -26.76064 -25.55047 -25.25590 -24.38087 -22.22088 -21.86243 -21.33719 -20.50862 -19.75363 -19.09820 -18.16674 -17.90419 -17.47967 -17.22193 -16.84618 -16.51080 -16.10573 -16.01852 -15.76473 -15.56389 -15.46680 -15.26235 -14.97399 -14.68753 -14.43510 -14.06688 -13.91076 -13.68525 -13.58942 -13.47508 -13.08656 -13.02207 -12.84352 -12.63304 -12.47885 -12.40638 -12.34057 -12.17460 -12.12755 -12.04739 -11.88553 -11.79923 -11.44625 -11.36186 -10.28416 -10.23049 -9.99475 -9.93754 -9.17293 -8.46129 -5.94657 0.04827 0.93838 1.37094 1.40136 1.53175 1.55707 2.06506 2.07305 2.23151 2.28358 2.75459 2.88456 3.20657 3.39465 3.72038 3.74304 3.76200 4.02493 4.20100 4.21015 4.25227 4.28322 4.35930 4.37258 4.49835 4.56800 4.57162 4.63253 4.65574 4.66969 4.74806 4.89228 4.98381 5.00312 5.05027 5.06076 5.23494 5.27554 5.33708 5.38760 5.41310 5.88253 6.07302 6.20609 6.32026 6.60241 6.61242 7.07302 7.13748 7.57318 8.13387 8.71554 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008256 B = 0.003318 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3390.590478 B = 8437.866212 C =10196.194127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.030 4.030 3 C 0.200 3.800 4 N -0.486 5.486 5 C -0.103 4.103 6 C 0.595 3.405 7 O -0.573 6.573 8 N -0.693 5.693 9 C 0.126 3.874 10 C 0.073 3.927 11 H 0.108 0.892 12 C -0.180 4.180 13 N -0.527 5.527 14 C 0.028 3.972 15 C 0.058 3.942 16 C 0.443 3.557 17 O -0.609 6.609 18 N -0.578 5.578 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.923 5.923 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.024 3.976 28 O -0.194 6.194 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.417 0.583 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.033 0.967 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.393 0.607 46 H 0.277 0.723 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.544 3.892 -8.799 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.010 4.010 4 N -0.215 5.215 5 C -0.222 4.222 6 C 0.381 3.619 7 O -0.454 6.454 8 N -0.342 5.342 9 C 0.003 3.997 10 C -0.036 4.036 11 H 0.126 0.874 12 C -0.239 4.239 13 N -0.251 5.251 14 C -0.119 4.119 15 C -0.073 4.073 16 C 0.230 3.770 17 O -0.494 6.494 18 N -0.215 5.215 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.564 5.564 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.195 1.195 27 C -0.051 4.051 28 O -0.080 6.080 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.254 0.746 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.111 0.889 44 H 0.089 0.911 45 H 0.227 0.773 46 H 0.086 0.914 47 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -18.718 3.427 -8.796 20.964 hybrid contribution 1.388 0.262 0.276 1.439 sum -17.330 3.689 -8.520 19.661 Atomic orbital electron populations 1.21761 0.91725 1.04350 1.02352 1.20406 0.97815 0.81789 1.06743 1.27173 0.98143 0.97925 0.77725 1.70786 1.16656 1.02878 1.31210 1.21836 1.11797 0.94563 0.93996 1.16970 0.77334 0.85092 0.82501 1.90768 1.50146 1.28463 1.76052 1.45719 1.65104 1.18643 1.04724 1.21596 1.00338 0.89274 0.88526 1.22086 1.00094 0.88352 0.93042 0.87371 1.22362 1.02157 0.99447 0.99937 1.61689 1.02892 1.26478 1.34049 1.22415 1.01175 0.99982 0.88369 1.21726 0.89385 0.93478 1.02710 1.20768 0.82291 0.91927 0.82027 1.90457 1.64437 1.38737 1.55804 1.41952 1.05369 1.08789 1.65414 1.19651 0.90347 0.86471 1.49487 0.90270 1.26039 0.96407 1.02514 0.96458 1.69681 1.07087 1.29030 1.50635 0.84941 0.77560 0.77353 0.78576 1.19832 1.19524 1.19549 1.25775 0.97036 0.87069 0.95180 1.84411 1.63315 1.22394 1.37868 0.93102 0.91858 0.88576 0.86251 0.87383 0.74619 0.92602 0.89155 0.92382 0.89536 0.91362 0.89854 0.92627 0.94892 0.88894 0.91060 0.77323 0.91397 0.72619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.89 71.98 0.71 -0.94 16 2 C -0.03 -0.44 6.56 29.85 0.20 -0.24 16 3 C 0.20 4.64 7.56 88.39 0.67 5.31 16 4 N -0.49 -14.30 11.06 -293.04 -3.24 -17.54 16 5 C -0.10 -3.02 6.99 40.41 0.28 -2.74 16 6 C 0.59 19.05 7.81 86.66 0.68 19.72 16 7 O -0.57 -20.17 16.89 -4.07 -0.07 -20.24 16 8 N -0.69 -20.55 5.41 -466.38 -2.52 -23.07 16 9 C 0.13 3.18 4.94 86.38 0.43 3.60 16 10 C 0.07 1.62 2.47 44.91 0.11 1.73 16 11 H 0.11 2.07 7.93 -2.38 -0.02 2.05 16 12 C -0.18 -3.29 8.41 71.98 0.61 -2.68 16 13 N -0.53 -16.16 3.82 -901.61 -3.45 -19.61 16 14 C 0.03 0.84 8.90 127.69 1.14 1.98 16 15 C 0.06 2.06 4.31 85.55 0.37 2.42 16 16 C 0.44 21.41 7.52 87.65 0.66 22.07 16 17 O -0.61 -33.50 13.88 -3.06 -0.04 -33.54 16 18 N -0.58 -30.44 5.29 -306.99 -1.62 -32.06 16 19 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 20 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 21 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 22 N -0.92 -51.00 13.05 21.66 0.28 -50.71 16 23 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 27 C 0.02 0.54 11.94 67.32 0.80 1.34 16 28 O -0.19 -4.25 10.73 0.43 0.00 -4.25 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.66 16 34 H 0.42 13.10 7.80 -92.71 -0.72 12.38 16 35 H 0.06 1.56 6.65 -2.39 -0.02 1.55 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 1.17 6.54 -2.39 -0.02 1.15 16 38 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.07 1.21 6.92 -2.39 -0.02 1.20 16 40 H 0.08 2.04 7.98 -2.39 -0.02 2.02 16 41 H 0.05 2.16 5.92 -2.38 -0.01 2.15 16 42 H 0.03 0.87 6.96 -2.39 -0.02 0.85 16 43 H 0.09 3.19 6.30 -2.39 -0.02 3.18 16 44 H 0.07 2.25 6.81 -2.39 -0.02 2.23 16 45 H 0.39 19.95 7.90 -92.71 -0.73 19.21 16 46 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 47 H 0.26 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -75.58 391.74 -1.13 -76.71 By element: Atomic # 1 Polarization: 46.06 SS G_CDS: -0.43 Total: 45.62 kcal Atomic # 6 Polarization: 25.04 SS G_CDS: 7.93 Total: 32.96 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -10.55 Total: -142.99 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -0.11 Total: -58.03 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -75.58 -1.13 -76.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700458057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.516 kcal (2) G-P(sol) polarization free energy of solvation -75.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds